Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.0e-102 376.7 191 100.0
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 3.6e-26 122.5 73 82.2
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 4.5e-21 105.5 61 83.6
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 2.9e-20 102.8 73 69.9
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 2.1e-18 96.7 77 62.3
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.0e-17 92.8 73 61.6
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.0e-17 92.8 73 61.6
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.0e-17 92.8 73 61.6
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 4.0e-17 92.4 77 59.7
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 5.2e-17 92.0 77 59.7
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 6.7e-17 91.7 77 58.4
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 6.7e-17 91.7 78 62.8
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 8.8e-17 91.3 77 59.7
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 8.8e-17 91.3 77 59.7
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 1.2e-16 90.9 73 60.3
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 1.5e-16 90.5 77 58.4
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 2.0e-16 90.1 77 57.1
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 2.0e-16 90.1 61 72.1
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 2.0e-16 90.1 77 58.4
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 3.3e-16 89.4 77 58.4
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 4.4e-16 89.0 77 57.1
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 4.4e-16 89.0 77 57.1
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 4.4e-16 89.0 77 57.1
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 7.5e-16 88.2 77 57.1
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 9.7e-16 87.8 77 55.8
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 9.7e-16 87.8 73 58.9
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 9.7e-16 87.8 77 57.1
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 1.3e-15 87.4 81 53.1
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.7e-15 87.0 143 38.5
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 1.7e-15 87.0 77 57.1
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 1.7e-15 87.0 77 57.1
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 2.2e-15 86.7 77 57.1
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 2.2e-15 86.7 61 68.9
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 2.2e-15 86.7 77 55.8
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 2.2e-15 86.7 77 54.5
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 2.2e-15 86.7 73 58.9
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 2.2e-15 86.7 77 58.4
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 2.8e-15 86.3 78 57.7
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 3.7e-15 85.9 78 53.8
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 3.7e-15 85.9 73 60.3
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 3.7e-15 85.9 61 67.2
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 3.7e-15 85.9 77 55.8
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 6.3e-15 85.1 80 56.2
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 6.3e-15 85.1 77 55.8
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 8.2e-15 84.7 77 54.5
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.1e-14 84.3 77 58.4
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.1e-14 84.3 77 58.4
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.1e-14 84.3 77 58.4
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 1.4e-14 84.0 77 54.5
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.8e-14 83.6 78 51.3
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.8e-14 83.6 73 57.5
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 1.8e-14 83.6 73 57.5
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 2.4e-14 83.2 77 51.9
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 3.1e-14 82.8 77 57.1
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 4.1e-14 82.4 77 53.2
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 4.1e-14 82.4 77 54.5
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 4.1e-14 82.4 77 54.5
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 4.1e-14 82.4 77 55.8
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 5.3e-14 82.0 77 53.2
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 7.0e-14 81.6 73 54.8
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 7.0e-14 81.6 77 53.2
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 7.0e-14 81.6 77 53.2
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 7.0e-14 81.6 77 50.6
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 9.1e-14 81.3 77 55.8
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 9.1e-14 81.3 73 54.8
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.2e-13 80.9 77 53.2
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.6e-13 80.5 77 53.2
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 2.0e-13 80.1 145 40.7
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 3.5e-13 79.3 71 60.6
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 4.5e-13 79.0 77 50.6
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 4.5e-13 79.0 60 63.3
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 4.5e-13 79.0 77 53.2
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 5.9e-13 78.6 58 69.0
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 5.9e-13 78.6 77 49.4
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 7.7e-13 78.2 73 53.4
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 1.0e-12 77.8 77 49.4
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 1.0e-12 77.8 77 49.4
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 1.0e-12 77.8 77 49.4
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 1.0e-12 77.8 77 49.4
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 1.0e-12 77.8 77 49.4
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.0e-12 77.8 77 49.4
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.0e-12 77.8 77 54.5
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.0e-12 77.8 77 53.2
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 1.7e-12 77.0 75 54.7
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 2.2e-12 76.6 77 48.1
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 2.2e-12 76.6 77 48.1
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 2.9e-12 76.3 77 48.1
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 2.9e-12 76.3 77 50.6
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 2.9e-12 76.3 73 50.7
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 2.9e-12 76.3 77 49.4
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 3.8e-12 75.9 73 53.4
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 3.8e-12 75.9 77 50.6
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 3.8e-12 75.9 77 49.4
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 6.5e-12 75.1 77 49.4
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 8.5e-12 74.7 61 65.6
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 8.5e-12 74.7 73 52.1
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 8.5e-12 74.7 80 52.5
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 8.5e-12 74.7 74 51.4
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 1.1e-11 74.3 80 47.5
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 1.5e-11 73.9 77 49.4
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 1.5e-11 73.9 86 45.3
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 1.9e-11 73.6 77 49.4
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.9e-11 73.6 77 49.4
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.9e-11 73.6 77 49.4
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 2.5e-11 73.2 60 61.7
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 2.5e-11 73.2 77 49.4
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 2.5e-11 73.2 77 48.1
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.5e-11 73.2 77 49.4
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.5e-11 73.2 77 49.4
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.2e-11 72.8 77 48.1
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.7e-10 69.7 74 45.9
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 2.7e-10 69.7 71 49.3
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 3.6e-10 69.3 71 47.9
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 2.3e-09 66.6 123 35.0
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 9.8e-08 61.2 73 45.2
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 2.2e-07 60.1 60 48.3
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 3.7e-07 59.3 55 52.7
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 3.1e-06 56.2 39 71.8
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 4.1e-06 55.8 58 50.0
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.4e-06 55.5 51 54.9


User provided reference genes

Program Settings