Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 2.3e-232 808.5 410 100.0
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 2.0e-199 699.1 412 84.5
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 9.2e-189 663.7 413 81.6
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.7e-187 659.4 412 78.6
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 6.8e-184 647.5 410 76.8
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.3e-182 643.3 412 76.9
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 1.7e-182 642.9 412 76.5
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 6.4e-182 641.0 412 75.5
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 1.1e-181 640.2 412 75.0
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.4e-181 639.8 410 75.4
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.6e-180 636.3 412 74.8
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.6e-180 636.3 408 75.0
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 2.1e-180 636.0 412 74.3
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.1e-180 636.0 410 74.6
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.6e-180 634.8 408 75.0
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.0e-179 633.6 411 74.0
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.0e-179 633.6 408 74.5
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.0e-179 633.6 414 74.9
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.3e-179 633.3 414 75.4
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.3e-179 633.3 408 74.5
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.3e-179 633.3 410 75.4
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 2.3e-179 632.5 412 74.5
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 3.0e-179 632.1 412 74.0
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 3.9e-179 631.7 413 74.3
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 5.1e-179 631.3 408 76.2
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.6e-179 630.9 408 74.3
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 6.6e-179 630.9 412 74.3
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 8.7e-179 630.6 410 75.4
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 8.7e-179 630.6 414 74.6
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.1e-178 630.2 408 75.7
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 3.3e-178 628.6 409 74.1
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 7.3e-178 627.5 412 73.8
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.3e-177 626.7 408 75.2
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 2.8e-177 625.5 409 74.1
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 3.6e-177 625.2 408 73.5
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 8.1e-177 624.0 412 73.3
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 8.1e-177 624.0 413 74.6
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.1e-176 623.6 412 75.5
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 1.1e-176 623.6 412 73.3
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.4e-176 623.2 409 73.1
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.8e-176 622.9 412 73.1
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 3.1e-176 622.1 413 73.8
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 9.0e-176 620.5 417 75.1
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 9.0e-176 620.5 408 74.5
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.5e-175 619.8 415 74.0
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 2.6e-175 619.0 410 72.2
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 3.4e-175 618.6 409 72.6
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 3.4e-175 618.6 412 73.3
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 5.8e-175 617.8 445 70.1
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 7.6e-175 617.5 412 72.6
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 9.9e-175 617.1 408 73.3
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 9.9e-175 617.1 412 74.0
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 9.9e-175 617.1 413 73.6
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.2e-174 615.9 413 72.6
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 2.9e-174 615.5 413 73.1
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 3.8e-174 615.1 408 73.8
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 3.8e-174 615.1 414 73.2
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 6.4e-174 614.4 408 72.3
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 8.4e-174 614.0 408 72.1
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.9e-173 612.8 479 65.6
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 2.4e-173 612.5 411 73.7
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 9.3e-173 610.5 414 72.7
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.6e-172 609.8 411 73.0
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 2.1e-172 609.4 409 72.1
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 2.1e-172 609.4 414 72.7
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 4.6e-172 608.2 413 71.4
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 1.0e-171 607.1 413 71.9
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 3.0e-171 605.5 415 73.0
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.1e-170 603.6 413 71.7
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.5e-170 602.4 409 71.6
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 2.5e-170 602.4 413 71.2
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.3e-170 602.1 409 72.4
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 4.3e-170 601.7 415 72.5
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 7.3e-170 600.9 415 70.8
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 9.6e-170 600.5 455 67.9
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-169 600.1 409 71.9
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.1e-169 599.4 409 71.1
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.1e-169 599.4 413 70.7
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 4.8e-169 598.2 416 70.2
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 4.8e-169 598.2 375 78.4
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 4.8e-169 598.2 412 72.6
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 8.1e-169 597.4 416 70.0
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.1e-168 597.0 415 71.3
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 1.1e-168 597.0 414 72.0
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 1.4e-168 596.7 418 71.5
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 4.0e-168 595.1 409 71.1
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 6.9e-168 594.3 409 70.4
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 6.9e-168 594.3 410 71.0
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 2.0e-167 592.8 409 69.7
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 2.0e-167 592.8 409 69.7
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 2.0e-167 592.8 409 69.7
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 3.4e-167 592.0 412 72.3
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 7.6e-167 590.9 409 69.9
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 7.6e-167 590.9 409 69.9
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.3e-166 590.1 408 69.4
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.3e-166 590.1 409 70.2
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.3e-166 590.1 409 69.2
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.2e-166 589.3 409 70.9
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 2.9e-166 589.0 408 69.1
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 2.9e-166 589.0 508 62.0
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 3.8e-166 588.6 409 68.9
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 8.4e-166 587.4 409 69.7
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.1e-165 587.0 409 69.7
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.1e-165 587.0 408 69.6
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.9e-165 586.3 408 69.6
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 9.3e-165 583.9 412 69.9
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 4.6e-164 581.6 418 69.4
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 1.0e-163 580.5 412 69.2
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.3e-163 580.1 412 69.7
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 7.6e-159 564.3 410 67.8
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 2.9e-158 562.4 420 68.3
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 4.9e-158 561.6 467 61.7
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 7.1e-157 557.8 402 69.7
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 1.1e-154 550.4 428 64.5
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.1e-154 550.4 418 66.0
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 1.7e-150 536.6 410 64.6
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 8.7e-147 524.2 346 74.6
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 2.1e-140 503.1 410 61.5
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.3e-134 483.8 329 71.7
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.7e-134 483.4 410 57.3
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 6.5e-134 481.5 341 70.7
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.1e-133 480.7 306 75.8
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 5.7e-130 468.4 410 56.6
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.7e-129 465.7 348 67.2
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 9.1e-128 461.1 421 57.2
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 5.9e-127 458.4 421 57.0
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.5e-125 453.0 334 69.2
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 9.4e-125 451.1 419 55.6
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.3e-102 376.7 234 79.1
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 1.3e-97 360.9 241 71.8
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.4e-80 304.3 431 41.8
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 5.2e-75 285.8 177 78.0
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 1.2e-71 274.6 389 42.2
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 1.9e-64 250.8 236 57.6
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 3.1e-59 233.4 329 43.2
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 4.8e-52 209.5 182 62.6
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 5.6e-45 186.0 113 77.9
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 3.1e-43 180.3 255 43.9
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 6.0e-39 166.0 152 55.3
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 6.3e-36 156.0 218 42.7
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.4e-27 128.3 108 56.5
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 7.7e-26 122.5 84 65.5
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.7e-25 121.3 80 70.0
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 4.2e-24 116.7 86 62.8
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 6.1e-23 112.8 82 64.6
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 3.3e-21 107.1 94 56.4
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 3.3e-21 107.1 94 56.4
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 4.8e-20 103.2 81 61.7
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 1.4e-19 101.7 74 64.9
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 1.4e-19 101.7 74 64.9
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 2.4e-19 100.9 93 55.9
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 1.5e-18 98.2 74 63.5
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 4.5e-18 96.7 183 39.3
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 5.9e-18 96.3 73 61.6
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 3.0e-14 84.0 66 59.1
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 3.7e-12 77.0 65 55.4
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 4.8e-12 76.6 59 61.0
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 4.5e-10 70.1 111 40.5
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 5.9e-10 69.7 111 39.6
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 1.7e-09 68.2 86 43.0


User provided reference genes

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