Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 2.0e-71 272.3 138 100.0
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 5.3e-64 247.7 138 89.1
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 6.7e-59 230.7 138 84.8
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.8e-56 222.6 133 82.7
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 9.1e-56 220.3 133 81.2
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 2.0e-55 219.2 133 82.0
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 2.6e-55 218.8 133 80.5
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 2.6e-55 218.8 133 81.2
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 4.5e-55 218.0 137 76.6
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 5.9e-55 217.6 133 81.2
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 7.7e-55 217.2 133 80.5
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.0e-54 216.9 133 79.7
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 1.0e-54 216.9 133 81.2
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 1.7e-54 216.1 133 79.7
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 5.0e-54 214.5 133 80.5
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 5.0e-54 214.5 134 81.3
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 2.5e-53 212.2 138 76.8
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 2.5e-53 212.2 133 79.7
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 3.2e-53 211.8 133 79.7
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 4.2e-53 211.5 132 77.3
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 5.5e-53 211.1 133 79.7
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 5.5e-53 211.1 133 77.4
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 5.5e-53 211.1 133 77.4
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 1.6e-52 209.5 132 77.3
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 1.6e-52 209.5 133 78.2
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.6e-52 209.5 133 78.2
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 2.1e-52 209.1 133 76.7
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 2.1e-52 209.1 135 77.0
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 2.7e-52 208.8 137 77.4
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 3.6e-52 208.4 132 77.3
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 4.7e-52 208.0 133 78.2
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 4.7e-52 208.0 133 78.2
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 6.1e-52 207.6 138 73.2
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 8.0e-52 207.2 133 77.4
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 1.4e-51 206.5 132 78.0
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 1.8e-51 206.1 133 75.9
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 2.3e-51 205.7 133 76.7
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 2.3e-51 205.7 138 71.7
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 3.9e-51 204.9 138 75.4
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 3.9e-51 204.9 120 83.3
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 6.7e-51 204.1 133 75.2
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 8.8e-51 203.8 133 80.5
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 8.8e-51 203.8 140 72.9
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 1.1e-50 203.4 124 78.2
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 1.1e-50 203.4 133 73.7
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 1.5e-50 203.0 133 77.4
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.5e-50 203.0 134 73.9
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 2.0e-50 202.6 133 76.7
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 2.6e-50 202.2 132 77.3
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 2.6e-50 202.2 124 77.4
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 2.6e-50 202.2 134 76.1
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 2.6e-50 202.2 134 76.1
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 4.4e-50 201.4 133 77.4
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 7.4e-50 200.7 134 73.9
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 1.7e-49 199.5 140 72.1
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 1.7e-49 199.5 134 75.4
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 2.2e-49 199.1 162 65.4
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 2.8e-49 198.7 134 73.9
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 2.8e-49 198.7 134 73.9
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 2.8e-49 198.7 133 72.9
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 3.7e-49 198.4 137 74.5
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 3.7e-49 198.4 137 70.8
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 3.7e-49 198.4 139 74.1
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 4.8e-49 198.0 134 73.1
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 4.8e-49 198.0 137 74.5
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 4.8e-49 198.0 139 69.8
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 6.3e-49 197.6 134 73.9
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 6.3e-49 197.6 134 73.9
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 8.2e-49 197.2 137 74.5
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 1.8e-48 196.1 134 72.4
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 2.4e-48 195.7 120 79.2
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 3.1e-48 195.3 122 77.0
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 4.1e-48 194.9 118 80.5
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 5.3e-48 194.5 122 77.0
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 7.0e-48 194.1 137 72.3
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 1.6e-47 193.0 137 71.5
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 1.6e-47 193.0 137 72.3
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 2.0e-47 192.6 123 78.0
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 2.6e-47 192.2 137 71.5
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 2.6e-47 192.2 137 71.5
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.6e-47 192.2 133 72.2
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 2.6e-47 192.2 133 72.2
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 3.5e-47 191.8 137 71.5
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 3.5e-47 191.8 116 80.2
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 4.5e-47 191.4 137 71.5
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 4.5e-47 191.4 137 71.5
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 7.7e-47 190.7 129 72.9
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 1.3e-46 189.9 107 86.9
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 1.3e-46 189.9 135 71.9
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 1.7e-46 189.5 137 72.3
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 2.9e-46 188.7 138 71.0
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 5.0e-46 188.0 137 70.1
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 8.5e-46 187.2 130 71.5
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 1.1e-45 186.8 129 73.6
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 1.1e-45 186.8 127 74.0
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 4.2e-45 184.9 131 72.5
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 7.2e-45 184.1 122 76.2
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 1.6e-44 183.0 133 70.7
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 2.1e-44 182.6 133 69.9
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 3.6e-44 181.8 133 69.9
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 6.1e-44 181.0 133 69.9
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 1.8e-43 179.5 132 70.5
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 2.3e-43 179.1 137 68.6
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 5.2e-43 177.9 124 74.2
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 2.8e-41 172.2 114 71.9
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 1.1e-40 170.2 125 71.2
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 1.6e-39 166.4 113 74.3
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 4.5e-39 164.9 118 68.6
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 5.5e-37 157.9 141 61.7
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 1.2e-36 156.8 139 60.4
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 6.8e-35 151.0 142 59.2
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 7.5e-34 147.5 140 57.9
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 2.2e-33 146.0 122 59.8
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 4.1e-32 141.7 117 65.0
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 3.5e-31 138.7 116 62.1
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 1.0e-30 137.1 118 61.0
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 6.1e-28 127.9 79 77.2
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 4.0e-27 125.2 102 61.8
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 4.4e-26 121.7 122 58.2
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 4.4e-26 121.7 102 61.8
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 7.5e-26 120.9 131 52.7
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 1.8e-24 116.3 99 58.6
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 4.1e-24 115.2 122 52.5
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.3e-22 109.4 131 49.6
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 9.5e-21 104.0 80 67.5
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.6e-20 103.2 70 72.9
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 8.0e-20 100.9 85 62.4
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 8.3e-17 90.9 137 39.4
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 6.2e-12 74.7 54 63.0
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 6.4e-09 64.7 41 73.2
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 9.2e-08 60.8 116 35.3
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 1.2e-07 60.5 121 37.2
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 2.1e-07 59.7 38 68.4
MD11G1071400 Malus domestica HOM05D005995 ORTHO05D007362 3.9e-06 55.5 47 68.1


User provided reference genes

Program Settings