Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0330431 Helianthus annuus HOM05D003546 ORTHO05D005667 1.5e-22 108.6 54 100.0
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 1.2e-11 72.4 51 72.5
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 1.2e-11 72.4 51 72.5
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 1.0e-10 69.3 49 73.5
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 5.0e-10 67.0 51 68.6
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 8.6e-10 66.2 51 68.6
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.9e-09 65.1 51 66.7
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 1.9e-09 65.1 51 66.7
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 2.5e-09 64.7 49 69.4
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 2.5e-09 64.7 51 66.7
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 2.5e-09 64.7 51 66.7
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 2.5e-09 64.7 49 67.3
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 3.3e-09 64.3 51 62.7
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 4.3e-09 63.9 51 64.7
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 4.3e-09 63.9 51 64.7
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 4.3e-09 63.9 51 64.7
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 4.3e-09 63.9 51 64.7
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 5.6e-09 63.5 49 69.4
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 5.6e-09 63.5 51 66.7
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 5.6e-09 63.5 51 62.7
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 5.6e-09 63.5 49 65.3
GSVIVG01014076001 Vitis vinifera HOM05D003546 ORTHO05D005667 5.6e-09 63.5 49 67.3
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 7.3e-09 63.2 49 65.3
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 7.3e-09 63.2 51 62.7
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 7.3e-09 63.2 51 64.7
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 9.5e-09 62.8 51 64.7
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 9.5e-09 62.8 51 64.7
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 9.5e-09 62.8 51 64.7
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 9.5e-09 62.8 51 64.7
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 9.5e-09 62.8 51 62.7
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 1.2e-08 62.4 49 65.3
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 1.2e-08 62.4 51 62.7
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 1.2e-08 62.4 51 64.7
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 1.2e-08 62.4 51 62.7
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 1.2e-08 62.4 49 63.3
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.6e-08 62.0 49 65.3
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.6e-08 62.0 49 65.3
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 1.6e-08 62.0 49 65.3
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 1.6e-08 62.0 49 67.3
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 1.6e-08 62.0 51 62.7
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 1.6e-08 62.0 49 67.3
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 1.6e-08 62.0 51 64.7
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 1.6e-08 62.0 51 58.8
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 1.6e-08 62.0 51 62.7
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 2.1e-08 61.6 51 62.7
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 2.1e-08 61.6 51 62.7
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 2.1e-08 61.6 51 62.7
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 2.1e-08 61.6 51 62.7
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 2.1e-08 61.6 49 63.3
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 2.1e-08 61.6 51 62.7
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 2.1e-08 61.6 51 62.7
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 2.1e-08 61.6 49 65.3
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 2.1e-08 61.6 49 65.3
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 2.1e-08 61.6 51 62.7
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 2.1e-08 61.6 49 65.3
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 2.8e-08 61.2 51 60.8
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 2.8e-08 61.2 51 64.7
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 2.8e-08 61.2 51 62.7
AUR62019675 Chenopodium quinoa HOM05D003546 ORTHO05D005667 2.8e-08 61.2 49 65.3
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 2.8e-08 61.2 51 60.8
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 2.8e-08 61.2 49 65.3
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 3.6e-08 60.8 49 65.3
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 3.6e-08 60.8 49 65.3
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 3.6e-08 60.8 51 62.7
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 3.6e-08 60.8 49 65.3
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 3.6e-08 60.8 51 60.8
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 3.6e-08 60.8 51 60.8
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 3.6e-08 60.8 49 65.3
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 6.1e-08 60.1 51 62.7
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 6.1e-08 60.1 51 60.8
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 6.1e-08 60.1 51 60.8
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 6.1e-08 60.1 49 65.3
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 6.1e-08 60.1 49 65.3
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 6.1e-08 60.1 51 60.8
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 8.0e-08 59.7 49 65.3
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 8.0e-08 59.7 49 65.3
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 8.0e-08 59.7 49 65.3
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 8.0e-08 59.7 49 65.3
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 8.0e-08 59.7 47 66.0
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 8.0e-08 59.7 48 66.7
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 8.0e-08 59.7 48 66.7
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 8.0e-08 59.7 48 66.7
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 8.0e-08 59.7 49 65.3
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 8.0e-08 59.7 49 65.3
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 1.0e-07 59.3 47 66.0
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 1.0e-07 59.3 51 58.8
Cc05_g10570 Coffea canephora HOM05D003546 ORTHO05D005667 1.0e-07 59.3 51 58.8
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 1.4e-07 58.9 51 58.8
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 1.4e-07 58.9 51 62.7
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 1.4e-07 58.9 49 63.3
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 1.4e-07 58.9 49 65.3
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 1.4e-07 58.9 49 61.2
arahy.Tifrunner.gnm1.ann1.FE4UN0 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.8e-07 58.5 49 61.2
arahy.Tifrunner.gnm1.ann1.JM4QTS Arachis hypogaea HOM05D003546 ORTHO05D005667 1.8e-07 58.5 49 61.2
Cre10.g424500 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 1.8e-07 58.5 51 58.8
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 1.8e-07 58.5 49 63.3
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 1.8e-07 58.5 48 64.6
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 1.8e-07 58.5 48 64.6
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 2.3e-07 58.2 51 54.9
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 3.1e-07 57.8 51 62.7
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 4.0e-07 57.4 49 63.3
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 4.0e-07 57.4 49 63.3
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 8.9e-07 56.2 49 63.3
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 1.2e-06 55.8 46 60.9
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 1.2e-06 55.8 49 63.3
VMungo1080G0318 Vigna mungo HOM05D003546 ORTHO05D005667 1.5e-06 55.5 48 60.4
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 2.6e-06 54.7 49 59.2
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 4.4e-06 53.9 49 59.2
Haze_08457 Corylus avellana HOM05D003546 ORTHO05D005667 4.4e-06 53.9 49 59.2
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 5.8e-06 53.5 49 57.1
Pp3c5_14610 Physcomitrium patens HOM05D000518 ORTHO05D005667 9.8e-06 52.8 49 57.1
SMO119G0495 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 9.8e-06 52.8 49 57.1
SMO163G0088 Selaginella moellendorffii HOM05D003546 ORTHO05D005667 9.8e-06 52.8 49 57.1


User provided reference genes

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