Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 2.9e-296 1021.1 515 100.0
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 3.2e-263 911.4 511 88.3
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 3.5e-262 907.9 512 89.6
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 1.1e-258 896.3 513 88.3
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.7e-219 765.0 520 74.4
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 4.8e-219 764.6 522 74.7
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 5.3e-218 761.1 521 73.9
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.1e-215 753.4 483 77.6
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 5.5e-215 751.1 474 78.1
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.1e-214 749.2 458 80.3
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.1e-214 749.2 458 80.1
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 2.7e-214 748.8 457 79.4
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 3.6e-214 748.4 517 73.5
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 1.8e-213 746.1 531 73.1
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 3.0e-213 745.3 462 78.8
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 4.0e-213 745.0 459 79.3
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 5.2e-213 744.6 519 74.6
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 5.2e-213 744.6 436 83.9
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.0e-212 742.7 457 79.0
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 2.6e-212 742.3 519 73.6
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 2.6e-212 742.3 479 78.5
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 2.6e-212 742.3 449 81.5
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 7.5e-212 740.7 445 82.2
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 7.5e-212 740.7 516 73.3
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 9.7e-212 740.3 436 83.3
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 2.4e-210 735.7 474 77.6
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 4.1e-210 734.9 441 82.1
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 5.3e-210 734.6 471 77.1
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 1.6e-209 733.0 462 78.8
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 2.7e-209 732.3 440 79.8
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 5.9e-209 731.1 436 82.6
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.0e-208 730.3 470 76.6
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.0e-208 730.3 433 83.4
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.7e-208 729.6 433 83.6
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 2.9e-208 728.8 436 82.1
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 3.8e-208 728.4 473 76.1
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 6.5e-208 727.6 434 81.8
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 6.5e-208 727.6 471 76.2
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 6.5e-208 727.6 460 78.3
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 1.9e-207 726.1 444 79.5
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 3.2e-207 725.3 489 74.4
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 1.6e-206 723.0 518 71.8
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 8.0e-206 720.7 524 68.9
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 8.0e-206 720.7 439 80.0
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 1.0e-205 720.3 435 80.7
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 1.8e-205 719.5 502 72.1
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 2.3e-205 719.2 514 71.2
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.0e-205 718.8 477 74.8
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 4.0e-205 718.4 521 70.6
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 5.2e-205 718.0 508 70.9
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 5.2e-205 718.0 423 83.0
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 5.2e-205 718.0 447 79.6
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 5.2e-205 718.0 438 80.4
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 8.8e-205 717.2 456 77.6
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 8.8e-205 717.2 423 82.5
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.5e-204 716.5 422 83.2
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 4.4e-204 714.9 422 83.2
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 7.5e-204 714.1 436 79.4
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 7.5e-204 714.1 444 79.5
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.3e-203 713.4 444 79.3
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 2.2e-203 712.6 438 80.6
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 6.3e-203 711.1 449 77.7
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.1e-202 710.3 440 78.0
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.6e-201 706.4 457 76.8
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 1.6e-201 706.4 480 74.6
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 2.0e-201 706.1 449 77.5
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 2.7e-201 705.7 444 79.1
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 3.5e-201 705.3 459 76.5
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.0e-200 703.7 444 77.5
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 1.7e-200 703.0 422 81.0
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 2.9e-200 702.2 458 76.4
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 2.9e-200 702.2 448 77.2
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 8.6e-200 700.7 462 76.4
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 8.6e-200 700.7 435 79.5
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 1.5e-199 699.9 458 76.2
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 5.5e-199 698.0 436 77.8
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 7.2e-199 697.6 422 81.0
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.8e-198 695.7 447 77.2
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 2.8e-198 695.7 438 76.9
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 6.1e-198 694.5 422 79.9
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.4e-197 693.3 444 76.8
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.2e-196 690.3 495 71.1
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 2.0e-196 689.5 530 67.5
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 2.0e-196 689.5 530 67.5
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 6.3e-195 684.5 509 67.2
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 6.3e-195 684.5 436 77.3
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 8.3e-195 684.1 435 77.2
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 1.4e-194 683.3 450 75.8
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 1.2e-193 680.2 442 75.3
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.6e-193 679.9 422 79.9
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 3.5e-193 678.7 505 68.9
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 4.5e-193 678.3 442 74.9
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 7.8e-193 677.6 440 75.5
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 2.9e-192 675.6 457 75.3
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 7.3e-191 671.0 490 71.0
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 9.5e-191 670.6 422 77.7
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 9.5e-191 670.6 476 70.8
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 4.7e-190 668.3 422 77.7
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 4.7e-190 668.3 422 77.7
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 8.0e-190 667.5 425 76.2
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 1.0e-189 667.2 422 76.8
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 3.1e-189 665.6 422 77.3
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 4.0e-189 665.2 439 74.5
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 1.2e-188 663.7 427 76.6
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 4.4e-188 661.8 426 76.1
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 5.8e-188 661.4 470 70.9
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 5.8e-188 661.4 432 74.1
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 1.4e-186 656.8 399 80.7
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.3e-184 650.2 476 67.4
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 1.7e-184 649.8 476 67.4
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 3.3e-183 645.6 447 73.2
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 5.6e-183 644.8 484 66.9
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 3.1e-181 639.0 426 72.8
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 1.5e-180 636.7 405 77.0
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.4e-178 629.4 441 70.3
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.7e-177 625.9 428 70.8
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 5.6e-175 618.2 443 68.4
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 4.3e-167 592.0 432 67.4
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 7.6e-164 581.3 369 78.0
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 1.4e-149 533.9 324 81.2
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 7.1e-146 521.5 303 84.5
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.1e-142 510.0 302 81.5
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 2.9e-139 499.6 434 59.7
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.4e-138 497.3 433 58.4
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 4.2e-138 495.7 311 77.5
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 7.1e-138 495.0 320 76.9
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 2.1e-137 493.4 324 76.2
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.1e-134 483.4 434 56.2
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 4.8e-134 482.3 297 80.8
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.4e-124 449.5 297 75.8
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.3e-123 447.6 337 68.8
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 7.4e-119 431.8 272 78.7
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 4.1e-117 426.0 424 54.7
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 3.9e-104 382.9 428 46.3
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.7e-94 349.7 440 43.4
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 1.8e-93 347.4 242 74.0
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 2.0e-76 290.8 175 80.0
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.8e-72 277.7 358 42.5
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.9e-54 217.2 133 79.7
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-52 211.8 177 62.7
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 2.4e-45 187.6 125 72.8
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 1.3e-43 181.8 180 53.3
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 3.9e-43 180.3 117 74.4
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.1e-42 178.7 138 65.9
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 1.6e-41 174.9 121 69.4
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.3e-33 148.7 92 73.9
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 5.4e-29 133.3 90 71.1
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 7.9e-28 129.4 84 70.2
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 7.9e-28 129.4 84 70.2
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.3e-27 128.6 81 71.6
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 1.9e-26 124.8 102 59.8
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 2.5e-26 124.4 102 60.8
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 9.6e-26 122.5 102 59.8
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 4.8e-25 120.2 99 59.6
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 2.0e-23 114.8 78 71.8
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 8.4e-22 109.4 82 68.3
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 1.1e-21 109.0 258 32.9
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 1.3e-19 102.1 70 67.1
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 5.1e-19 100.1 126 47.6
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 5.1e-19 100.1 126 47.6
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 2.6e-15 87.8 53 79.2
Nitab4.5_0001773g0070 Nicotiana tabacum HOM05D000974 ORTHO05D285698 2.9e-06 57.8 43 60.5


User provided reference genes

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