Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 2.5e-77 292.0 141 100.0
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 1.2e-31 140.2 68 95.6
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.6e-28 129.8 64 92.2
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.2e-23 113.6 72 70.8
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.2e-23 113.6 72 70.8
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.2e-23 113.6 79 69.6
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 1.6e-23 113.2 71 73.2
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 1.6e-23 113.2 74 71.6
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 1.6e-23 113.2 71 73.2
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 1.6e-23 113.2 72 70.8
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.6e-23 113.2 73 71.2
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.1e-23 112.8 69 73.9
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.7e-23 112.5 75 73.3
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 2.7e-23 112.5 70 72.9
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 2.7e-23 112.5 70 72.9
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 4.6e-23 111.7 66 75.8
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 7.9e-23 110.9 68 76.5
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.0e-22 110.5 71 71.8
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.0e-22 110.5 66 77.3
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.4e-22 110.2 70 72.9
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.4e-22 110.2 62 82.3
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.8e-22 109.8 70 75.7
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 2.3e-22 109.4 70 71.4
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 2.3e-22 109.4 83 62.7
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 3.9e-22 108.6 72 68.1
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 6.7e-22 107.8 73 71.2
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 6.7e-22 107.8 73 71.2
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.7e-22 107.8 62 80.6
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 8.8e-22 107.5 71 73.2
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 8.8e-22 107.5 62 77.4
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 8.8e-22 107.5 61 78.7
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.1e-21 107.1 71 71.8
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.5e-21 106.7 72 72.2
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 1.5e-21 106.7 64 76.6
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 2.0e-21 106.3 62 77.4
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 2.6e-21 105.9 77 64.9
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 3.3e-21 105.5 90 60.0
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 3.3e-21 105.5 69 69.6
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 4.4e-21 105.1 62 72.6
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 7.4e-21 104.4 66 69.7
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 9.7e-21 104.0 77 64.9
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 9.7e-21 104.0 61 73.8
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 1.3e-20 103.6 61 75.4
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 2.2e-20 102.8 84 57.1
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 2.8e-20 102.4 64 71.9
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 2.8e-20 102.4 64 71.9
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 2.8e-20 102.4 61 72.1
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 2.8e-20 102.4 61 72.1
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 2.8e-20 102.4 64 71.9
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 2.8e-20 102.4 74 66.2
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.8e-20 102.4 68 69.1
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 3.7e-20 102.1 62 74.2
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 3.7e-20 102.1 62 74.2
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 3.7e-20 102.1 65 69.2
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 3.7e-20 102.1 62 72.6
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 3.7e-20 102.1 77 63.6
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 3.7e-20 102.1 62 74.2
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 4.8e-20 101.7 79 58.2
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 4.8e-20 101.7 72 63.9
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 4.8e-20 101.7 62 71.0
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.8e-20 101.7 64 68.8
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.8e-20 101.7 64 68.8
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 4.8e-20 101.7 74 66.2
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 6.3e-20 101.3 75 62.7
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.3e-20 101.3 69 66.7
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.3e-20 101.3 69 66.7
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.3e-20 101.3 69 66.7
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 6.3e-20 101.3 69 66.7
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 6.3e-20 101.3 86 58.1
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 6.3e-20 101.3 69 65.2
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 6.3e-20 101.3 75 64.0
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 8.2e-20 100.9 68 66.2
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 8.2e-20 100.9 59 74.6
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 8.2e-20 100.9 75 61.3
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 1.1e-19 100.5 74 60.8
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 1.1e-19 100.5 72 63.9
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.4e-19 100.1 62 72.6
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.4e-19 100.1 62 72.6
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.4e-19 100.1 62 72.6
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.4e-19 100.1 74 60.8
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 1.4e-19 100.1 61 70.5
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.8e-19 99.8 64 70.3
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.8e-19 99.8 72 62.5
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 2.4e-19 99.4 64 68.8
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 2.4e-19 99.4 64 68.8
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 2.4e-19 99.4 71 66.2
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 2.4e-19 99.4 74 63.5
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 2.4e-19 99.4 65 67.7
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 2.4e-19 99.4 65 67.7
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 2.4e-19 99.4 72 63.9
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 2.4e-19 99.4 59 72.9
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 3.1e-19 99.0 63 69.8
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 3.1e-19 99.0 69 65.2
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.1e-19 99.0 69 65.2
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.1e-19 99.0 69 65.2
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.1e-19 99.0 69 65.2
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.1e-19 99.0 66 72.7
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 4.1e-19 98.6 68 64.7
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 4.1e-19 98.6 61 72.1
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 4.1e-19 98.6 62 69.4
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 4.1e-19 98.6 61 72.1
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 6.9e-19 97.8 62 69.4
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 1.2e-18 97.1 72 59.7
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.5e-18 96.7 62 67.7
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 2.0e-18 96.3 64 67.2
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 2.0e-18 96.3 65 67.7
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 2.0e-18 96.3 65 67.7
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.0e-18 96.3 68 63.2
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 2.0e-18 96.3 72 58.3
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 2.6e-18 95.9 62 67.7
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.6e-18 95.9 73 68.5
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 3.4e-18 95.5 77 61.0
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 4.5e-18 95.1 79 57.0
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.3e-17 93.6 61 68.9
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.7e-17 93.2 66 60.6
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.7e-17 93.2 80 57.5
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.9e-17 92.4 74 55.4
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 1.4e-16 90.1 74 54.1
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.2e-15 87.0 65 55.4
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 2.1e-15 86.3 70 58.6
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 4.7e-15 85.1 63 57.1
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 2.3e-14 82.8 61 59.0
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 3.0e-14 82.4 61 60.7
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 3.0e-14 82.4 57 64.9
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 2.0e-13 79.7 58 60.3
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 2.0e-13 79.7 69 55.1
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 2.0e-13 79.7 61 57.4
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 4.4e-13 78.6 44 84.1
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 7.4e-13 77.8 64 51.6
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 8.2e-12 74.3 75 48.0
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 2.0e-10 69.7 64 48.4
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 2.5e-08 62.8 65 50.8


User provided reference genes

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