Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0327871 Helianthus annuus HOM05D004789 ORTHO05D006078 2.5e-74 282.0 136 100.0
HanXRQChr17g0538711 Helianthus annuus HOM05D004789 ORTHO05D006078 2.8e-25 119.0 98 66.3
HanXRQChr06g0173981 Helianthus annuus HOM05D004789 ORTHO05D006078 4.6e-20 101.7 98 58.2
HanXRQChr06g0174041 Helianthus annuus HOM05D004789 ORTHO05D006078 6.1e-20 101.3 98 56.1
DCAR_020684 Daucus carota HOM05D004789 ORTHO05D006078 8.8e-19 97.4 98 53.1
PSO017G6674 Papaver somniferum HOM05D004789 ORTHO05D006078 1.1e-18 97.1 66 74.2
PSO675G5907 Papaver somniferum HOM05D004789 ORTHO05D006078 1.1e-18 97.1 66 74.2
Solyc04g056540.3 Solanum lycopersicum HOM05D004789 ORTHO05D006078 2.5e-18 95.9 98 55.1
Sopen04g025480 Solanum pennellii HOM05D004789 ORTHO05D006078 5.7e-18 94.7 98 54.1
MBI11_g05799_MAGBIO Magnolia biondii HOM05D004789 ORTHO05D006078 7.4e-18 94.4 55 76.4
Dinv29093 Davidia involucrata HOM05D004789 ORTHO05D006078 9.7e-18 94.0 66 71.2
Sc16g0010430 Simmondsia chinensis HOM05D004789 ORTHO05D006078 9.7e-18 94.0 55 76.4
QL01p049601 Quercus lobata HOM05D004789 ORTHO05D006078 1.7e-17 93.2 63 69.8
MD04G1245400 Malus domestica HOM05D004789 ORTHO05D006078 2.2e-17 92.8 63 71.4
MD13G1061000 Malus domestica HOM05D004789 ORTHO05D006078 2.2e-17 92.8 63 71.4
Eucgr.C00113 Eucalyptus grandis HOM05D004789 ORTHO05D006078 2.8e-17 92.4 63 73.0
Aqoxy2G01476 Aquilegia oxysepala HOM05D004789 ORTHO05D006078 3.7e-17 92.0 66 66.7
Cpa.g.sc2508.1 Carica papaya HOM05D004789 ORTHO05D006078 4.8e-17 91.7 63 69.8
Nitab4.5_0000083g0070 Nicotiana tabacum HOM05D004789 ORTHO05D006078 4.8e-17 91.7 55 80.0
Nitab4.5_0001435g0010 Nicotiana tabacum HOM05D004789 ORTHO05D006078 4.8e-17 91.7 55 80.0
PGSC0003DMG400010518 Solanum tuberosum HOM05D004789 ORTHO05D006078 4.8e-17 91.7 98 53.1
CAN.G1807.2 Capsicum annuum HOM05D004789 ORTHO05D006078 6.3e-17 91.3 66 69.7
COL.COLO4_38035 Corchorus olitorius HOM05D004789 ORTHO05D006078 6.3e-17 91.3 55 72.7
Gohir.D08G246500 Gossypium hirsutum HOM05D004789 ORTHO05D006078 6.3e-17 91.3 55 76.4
Gorai.004G263000 Gossypium raimondii HOM05D004789 ORTHO05D006078 6.3e-17 91.3 55 76.4
Lsat_1_v5_gn_3_24661 Lactuca sativa HOM05D004789 ORTHO05D006078 6.3e-17 91.3 66 71.2
Hund21904 Selenicereus undatus HOM05D004789 ORTHO05D006078 6.3e-17 91.3 97 48.5
VMungo1383G0580 Vigna mungo HOM05D004789 ORTHO05D006078 6.3e-17 91.3 61 65.6
Atru.BG.270.p Acer truncatum HOM05D004789 ORTHO05D006078 1.1e-16 90.5 55 70.9
ATR0661G474 Amborella trichopoda HOM05D004789 ORTHO05D006078 1.1e-16 90.5 66 66.7
Duzib106G1853 Durio zibethinus HOM05D004789 ORTHO05D006078 1.1e-16 90.5 66 66.7
PGR119G2005 Punica granatum HOM05D004789 ORTHO05D006078 1.1e-16 90.5 63 66.7
Rhsim05G0170800 Rhododendron simsii HOM05D004789 ORTHO05D006078 1.1e-16 90.5 98 52.0
GSVIVG01019077001 Vitis vinifera HOM05D004789 ORTHO05D006078 1.1e-16 90.5 98 50.0
FvH4_6g00440 Fragaria vesca HOM05D004789 ORTHO05D006078 1.4e-16 90.1 55 74.5
Phvul.008G053900 Phaseolus vulgaris HOM05D004789 ORTHO05D006078 1.4e-16 90.1 63 66.7
PGR083G2717 Punica granatum HOM05D004789 ORTHO05D006078 1.4e-16 90.1 63 66.7
PGR092G0005 Punica granatum HOM05D004789 ORTHO05D006078 1.4e-16 90.1 63 66.7
CANSAT54G2477 Cannabis sativa HOM05D004789 ORTHO05D006078 1.8e-16 89.7 64 65.6
FAN09G1869 Fragaria x ananassa HOM05D004789 ORTHO05D006078 1.8e-16 89.7 55 72.7
Hma1.2p1_0609F.1_g188420 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 1.8e-16 89.7 55 74.5
Hma1.2p1_0609F.1_g188430 Hydrangea macrophylla HOM05D004789 ORTHO05D006078 1.8e-16 89.7 55 74.5
Manes.12G005100 Manihot esculenta HOM05D004789 ORTHO05D006078 1.8e-16 89.7 63 66.7
Potri.019G054000 Populus trichocarpa HOM05D004789 ORTHO05D006078 1.8e-16 89.7 97 46.4
Hund07352 Selenicereus undatus HOM05D004789 ORTHO05D006078 1.8e-16 89.7 55 72.7
Prupe.6G362000 Prunus persica HOM05D004789 ORTHO05D006078 2.4e-16 89.4 61 67.2
RcHm_v2.0_Chr3g0447811 Rosa chinensis HOM05D004789 ORTHO05D006078 2.4e-16 89.4 63 66.7
CDE05G3244 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 3.1e-16 89.0 55 74.5
Ciclev10011346m.g Citrus clementina HOM05D004789 ORTHO05D006078 3.1e-16 89.0 63 68.3
EL10Ac4g09992 Beta vulgaris HOM05D004789 ORTHO05D006078 4.1e-16 88.6 98 46.9
AUR62000303 Chenopodium quinoa HOM05D004789 ORTHO05D006078 4.1e-16 88.6 98 49.0
Cc09_g03720 Coffea canephora HOM05D004789 ORTHO05D006078 4.1e-16 88.6 66 69.7
AL5G26580 Arabidopsis lyrata HOM05D004789 ORTHO05D006078 5.3e-16 88.2 55 69.1
Carub.0005s1348 Capsella rubella HOM05D004789 ORTHO05D006078 5.3e-16 88.2 55 69.1
Lalb_Chr03g0038671 Lupinus albus HOM05D004789 ORTHO05D006078 5.3e-16 88.2 63 68.3
Sp5g14500 Schrenkiella parvula HOM05D004789 ORTHO05D006078 5.3e-16 88.2 55 69.1
Thecc.05G194100 Theobroma cacao HOM05D004789 ORTHO05D006078 5.3e-16 88.2 55 70.9
CSS0025571 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 6.9e-16 87.8 66 66.7
CSS0046891 Camellia sinensis var. sinensis HOM05D004789 ORTHO05D006078 6.9e-16 87.8 66 66.7
Sabra19G0063100 Salix brachista HOM05D004789 ORTHO05D006078 6.9e-16 87.8 55 69.1
THA.LOC104801872 Tarenaya hassleriana HOM05D004789 ORTHO05D006078 6.9e-16 87.8 55 70.9
vmacro19979 Vaccinium macrocarpon HOM05D004789 ORTHO05D006078 6.9e-16 87.8 66 66.7
AT3G47390 Arabidopsis thaliana HOM05D004789 ORTHO05D006078 9.1e-16 87.4 55 69.1
arahy.Tifrunner.gnm1.ann1.537LAH Arachis hypogaea HOM05D004789 ORTHO05D006078 9.1e-16 87.4 55 69.1
arahy.Tifrunner.gnm1.ann1.66TKXZ Arachis hypogaea HOM05D004789 ORTHO05D006078 9.1e-16 87.4 55 69.1
Lsat_1_v5_gn_8_109000 Lactuca sativa HOM05D004789 ORTHO05D006078 1.2e-15 87.0 98 52.0
AUR62006648 Chenopodium quinoa HOM05D004789 ORTHO05D006078 1.5e-15 86.7 55 69.1
Glyma.09G249800 Glycine max HOM05D004789 ORTHO05D006078 1.5e-15 86.7 63 63.5
BcaC01g01832 Brassica carinata HOM05D004789 ORTHO05D006078 2.0e-15 86.3 55 65.5
C03p71470 Brassica napus HOM05D004789 ORTHO05D006078 2.0e-15 86.3 55 65.5
BolC3t19438H Brassica oleracea HOM05D004789 ORTHO05D006078 2.0e-15 86.3 55 65.5
Os02g0473000 Oryza sativa ssp. japonica HOM05D004789 ORTHO05D006078 2.0e-15 86.3 52 71.2
Actinidia06832 Actinidia chinensis HOM05D004789 ORTHO05D006078 2.6e-15 85.9 66 65.2
BcaB01g00932 Brassica carinata HOM05D004789 ORTHO05D006078 2.6e-15 85.9 55 65.5
A06p20290 Brassica napus HOM05D004789 ORTHO05D006078 2.6e-15 85.9 55 65.5
BraA06t25110Z Brassica rapa HOM05D004789 ORTHO05D006078 2.6e-15 85.9 55 65.5
TWI36G0056 Tripterygium wilfordii HOM05D004789 ORTHO05D006078 2.6e-15 85.9 63 65.1
Thhalv10010225m.g Eutrema salsugineum HOM05D004789 ORTHO05D006078 3.4e-15 85.5 55 67.3
Aa31csc271G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 4.5e-15 85.1 97 42.3
Medtr7g080117 Medicago truncatula HOM05D004789 ORTHO05D006078 7.7e-15 84.3 63 65.1
Psat3g102920 Pisum sativum HOM05D004789 ORTHO05D006078 7.7e-15 84.3 63 65.1
TPR.G10693 Trifolium pratense HOM05D004789 ORTHO05D006078 7.7e-15 84.3 63 65.1
Aa31sc60G10 Aethionema arabicum HOM05D004789 ORTHO05D006078 1.0e-14 84.0 55 65.5
SGA_v2.0_scaffold11G05812 Striga asiatica HOM05D004789 ORTHO05D006078 1.0e-14 84.0 66 66.7
MELO3C010048.2 Cucumis melo HOM05D004789 ORTHO05D006078 1.7e-14 83.2 63 63.5
Lj1g0000623 Lotus japonicus HOM05D004789 ORTHO05D006078 2.2e-14 82.8 55 67.3
HPP92_008120 Vanilla planifolia HOM05D004789 ORTHO05D006078 2.2e-14 82.8 67 58.2
Oeu009739.1 Olea europaea HOM05D004789 ORTHO05D006078 3.8e-14 82.0 66 60.6
Ca_07992_v3 Cicer arietinum L. HOM05D004789 ORTHO05D006078 6.5e-14 81.3 63 61.9
ClCG03G010600 Citrullus lanatus HOM05D004789 ORTHO05D006078 1.1e-13 80.5 63 60.3
SEGI_07080 Sequoiadendron giganteum HOM05D004789 ORTHO05D006078 1.1e-13 80.5 98 42.9
Cre17.g728950 Chlamydomonas reinhardtii HOM05D004789 ORTHO05D006078 2.5e-13 79.3 76 48.7
SalBow1G3031 Salvia bowleyana HOM05D004789 ORTHO05D006078 2.5e-13 79.3 98 46.9
SGA_v2.0_scaffold14G07118 Striga asiatica HOM05D004789 ORTHO05D006078 2.5e-13 79.3 66 62.1
Sed0025011 Sechium edule HOM05D004789 ORTHO05D006078 3.2e-13 79.0 63 58.7
Mapoly0151s0033 Marchantia polymorpha HOM05D004789 ORTHO05D006078 2.1e-12 76.3 55 60.0
Migut.F02116 Erythranthe guttata HOM05D004789 ORTHO05D006078 3.6e-12 75.5 55 65.5
Pp3c15_7710 Physcomitrium patens HOM05D004789 ORTHO05D006078 1.4e-11 73.6 67 53.7
Pp3c19_9150 Physcomitrium patens HOM05D004789 ORTHO05D006078 3.0e-11 72.4 54 63.0
SMO141G0244 Selaginella moellendorffii HOM05D004789 ORTHO05D006078 3.9e-11 72.0 62 51.6
Pp3c21_670 Physcomitrium patens HOM05D004789 ORTHO05D006078 5.1e-11 71.6 67 53.7
SHI13715 Sapria himalayana HOM05D004789 ORTHO05D006078 8.8e-11 70.9 55 58.2
unitig_0.g1013 Utricularia gibba HOM05D004789 ORTHO05D006078 1.1e-10 70.5 66 56.1
Peaxi162Scf00048g00311 Petunia axillaris HOM05D004789 ORTHO05D006078 1.5e-10 70.1 91 49.5
CBR_g21226 Chara braunii HOM05D004789 ORTHO05D006078 2.0e-10 69.7 55 58.2
AagrBONN_evm.TU.Sc2ySwM_117.447 Anthoceros agrestis HOM05D004789 ORTHO05D006078 4.4e-10 68.6 55 58.2
MELO3C010050.2 Cucumis melo HOM05D004789 ORTHO05D006078 9.7e-10 67.4 64 53.1
CDE05G2962 Ceratophyllum demersum HOM05D004789 ORTHO05D006078 2.6e-07 59.3 55 58.2
Ah.06g195430 Amaranthus hybridus HOM05D004789 ORTHO05D006078 4.5e-07 58.5 48 60.4
CARHR156030 Cardamine hirsuta HOM05D004789 ORTHO05D006078 7.7e-07 57.8 37 67.6
Ah.01g017460 Amaranthus hybridus HOM05D004789 ORTHO05D006078 5.0e-06 55.1 49 51.0


User provided reference genes

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