Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0327321 Helianthus annuus HOM05D000811 ORTHO05D004743 3.0e-51 204.9 106 100.0
HanXRQChr14g0441311 Helianthus annuus HOM05D000811 ORTHO05D004743 2.3e-35 152.1 86 89.5
Lsat_1_v5_gn_2_78761 Lactuca sativa HOM05D000811 ORTHO05D004743 5.2e-35 151.0 86 89.5
ECA238G1572 Erigeron canadensis HOM05D000811 ORTHO05D004743 4.4e-34 147.9 102 72.5
Lsat_1_v5_gn_3_74081 Lactuca sativa HOM05D000811 ORTHO05D004743 7.5e-34 147.1 102 73.5
ECA246G0760 Erigeron canadensis HOM05D000811 ORTHO05D004743 5.4e-32 141.0 101 69.3
CSS0030860 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D004743 7.0e-32 140.6 86 81.4
CAN.G1329.5 Capsicum annuum HOM05D000811 ORTHO05D004743 7.8e-31 137.1 100 70.0
Dinv40074 Davidia involucrata HOM05D000811 ORTHO05D004743 1.0e-30 136.7 84 79.8
COL.COLO4_21930 Corchorus olitorius HOM05D000811 ORTHO05D004743 3.0e-30 135.2 102 67.6
Lj4A217G58 Lonicera japonica HOM05D000811 ORTHO05D004743 3.0e-30 135.2 86 77.9
Duzib264G0600 Durio zibethinus HOM05D000811 ORTHO05D004743 3.9e-30 134.8 86 75.6
HanXRQChr15g0482841 Helianthus annuus HOM05D000811 ORTHO05D004743 3.9e-30 134.8 86 77.9
Thecc.01G020900 Theobroma cacao HOM05D000811 ORTHO05D004743 5.0e-30 134.4 85 76.5
PGSC0003DMG400001617 Solanum tuberosum HOM05D000811 ORTHO05D004743 6.6e-30 134.0 84 78.6
Hma1.2p1_0258F.1_g104200 Hydrangea macrophylla HOM05D000811 ORTHO05D004743 8.6e-30 133.7 84 76.2
MD08G1077500 Malus domestica HOM05D000811 ORTHO05D004743 1.1e-29 133.3 86 75.6
Cfa006960 Carpinus fangiana HOM05D000811 ORTHO05D007840 1.5e-29 132.9 86 74.4
Lalb_Chr05g0229881 Lupinus albus HOM05D000811 ORTHO05D004743 1.5e-29 132.9 100 67.0
Cc07_g10610 Coffea canephora HOM05D000811 ORTHO05D004743 1.9e-29 132.5 83 81.9
Duzib147G0350 Durio zibethinus HOM05D000811 ORTHO05D004743 1.9e-29 132.5 102 64.7
MD04G1047200 Malus domestica HOM05D000811 ORTHO05D004743 2.5e-29 132.1 86 75.6
Rhsim08G0034300 Rhododendron simsii HOM05D000811 ORTHO05D007840 2.5e-29 132.1 87 73.6
Solyc01g110530.3 Solanum lycopersicum HOM05D000811 ORTHO05D004743 2.5e-29 132.1 84 77.4
Sopen01g052660 Solanum pennellii HOM05D000811 ORTHO05D004743 2.5e-29 132.1 84 77.4
Peaxi162Scf00362g01151 Petunia axillaris HOM05D000811 ORTHO05D004743 3.3e-29 131.7 87 74.7
Dinv33618 Davidia involucrata HOM05D000811 ORTHO05D004743 4.3e-29 131.3 84 76.2
CSS0015066 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D004743 5.6e-29 131.0 84 76.2
CSS0031839 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D004743 5.6e-29 131.0 84 76.2
Dinv23445 Davidia involucrata HOM05D000586 ORTHO05D003356 5.6e-29 131.0 84 73.8
Duzib187G1507 Durio zibethinus HOM05D000811 ORTHO05D004743 5.6e-29 131.0 86 73.3
Glyma.02G049500 Glycine max HOM05D000811 ORTHO05D004743 7.3e-29 130.6 109 64.2
Glyma.16G129900 Glycine max HOM05D000811 ORTHO05D004743 7.3e-29 130.6 109 64.2
Manes.02G103000 Manihot esculenta HOM05D000811 ORTHO05D004743 7.3e-29 130.6 101 62.4
Gohir.D10G090300 Gossypium hirsutum HOM05D000811 ORTHO05D004743 9.5e-29 130.2 101 65.3
Gorai.011G099300 Gossypium raimondii HOM05D000811 ORTHO05D004743 9.5e-29 130.2 101 65.3
TWI09G0609 Tripterygium wilfordii HOM05D000811 ORTHO05D004743 9.5e-29 130.2 85 74.1
Cpa.g.sc6.231 Carica papaya HOM05D000811 ORTHO05D004743 1.2e-28 129.8 85 75.3
Gohir.A10G097900 Gossypium hirsutum HOM05D000811 ORTHO05D004743 1.2e-28 129.8 101 65.3
Nitab4.5_0001133g0070 Nicotiana tabacum HOM05D000811 ORTHO05D004743 1.2e-28 129.8 86 73.3
Potri.007G013400 Populus trichocarpa HOM05D000811 ORTHO05D004743 1.2e-28 129.8 86 73.3
Haze_03791 Corylus avellana HOM05D000811 ORTHO05D004743 1.6e-28 129.4 81 75.3
Lalb_Chr16g0391191 Lupinus albus HOM05D000811 ORTHO05D004743 1.6e-28 129.4 101 64.4
Prupe.1G202600 Prunus persica HOM05D000811 ORTHO05D004743 1.6e-28 129.4 86 73.3
Sed0008902 Sechium edule HOM05D000811 ORTHO05D004743 1.6e-28 129.4 102 64.7
arahy.Tifrunner.gnm1.ann1.66CB8L Arachis hypogaea HOM05D000811 ORTHO05D004743 2.1e-28 129.0 81 75.3
Ciclev10026785m.g Citrus clementina HOM05D000811 ORTHO05D004743 2.1e-28 129.0 85 72.9
Gohir.D11G044800 Gossypium hirsutum HOM05D000811 ORTHO05D004743 2.1e-28 129.0 86 73.3
MSTRG.5435 Avicennia marina HOM05D000811 ORTHO05D004743 2.8e-28 128.6 101 64.4
ClCG07G008440 Citrullus lanatus HOM05D000811 ORTHO05D004743 2.8e-28 128.6 102 63.7
TAR381G1630 Trochodendron aralioides HOM05D000811 ORTHO05D004743 2.8e-28 128.6 84 73.8
vmacro18420 Vaccinium macrocarpon HOM05D000811 ORTHO05D004743 2.8e-28 128.6 85 72.9
Actinidia31003 Actinidia chinensis HOM05D000811 ORTHO05D004743 3.6e-28 128.3 83 77.1
Aqoxy5G01449 Aquilegia oxysepala HOM05D000811 ORTHO05D004743 3.6e-28 128.3 84 73.8
Dinv41989 Davidia involucrata HOM05D000586 ORTHO05D003356 3.6e-28 128.3 84 72.6
Lj4g0014424 Lotus japonicus HOM05D000811 ORTHO05D004743 3.6e-28 128.3 102 63.7
Oeu035303.1 Olea europaea HOM05D000811 ORTHO05D004743 3.6e-28 128.3 86 76.7
Hund16485 Selenicereus undatus HOM05D000811 ORTHO05D004743 3.6e-28 128.3 101 61.4
TAR625G0006 Trochodendron aralioides HOM05D000811 ORTHO05D004743 3.6e-28 128.3 84 72.6
Ah.03g141760 Amaranthus hybridus HOM05D000811 ORTHO05D004743 4.7e-28 127.9 101 62.4
Nitab4.5_0006862g0010 Nicotiana tabacum HOM05D000811 ORTHO05D004743 4.7e-28 127.9 86 72.1
Phvul.003G260800 Phaseolus vulgaris HOM05D000811 ORTHO05D004743 4.7e-28 127.9 89 74.2
PGR102G1785 Punica granatum HOM05D000811 ORTHO05D004743 4.7e-28 127.9 101 61.4
TPR.G30057 Trifolium pratense HOM05D000811 ORTHO05D004743 4.7e-28 127.9 106 62.3
arahy.Tifrunner.gnm1.ann1.LCWP3I Arachis hypogaea HOM05D000811 ORTHO05D004743 6.2e-28 127.5 81 74.1
Manes.01G144800 Manihot esculenta HOM05D000811 ORTHO05D004743 6.2e-28 127.5 101 61.4
TAR628G0680 Trochodendron aralioides HOM05D000811 ORTHO05D004743 6.2e-28 127.5 84 73.8
arahy.Tifrunner.gnm1.ann1.T1352T Arachis hypogaea HOM05D000811 ORTHO05D004743 1.0e-27 126.7 94 68.1
VMungo0289G0001 Vigna mungo HOM05D000811 ORTHO05D004743 1.0e-27 126.7 84 77.4
CiPaw.08G132800 Carya illinoinensis HOM05D000811 ORTHO05D004743 1.4e-27 126.3 86 70.9
Gorai.007G048100 Gossypium raimondii HOM05D000811 ORTHO05D004743 1.4e-27 126.3 86 72.1
Oeu060412.1 Olea europaea HOM05D000811 ORTHO05D004743 1.4e-27 126.3 101 61.4
Nn5g29274 Nelumbo nucifera HOM05D000811 ORTHO05D004743 1.8e-27 125.9 84 71.4
TWI53G1676 Tripterygium wilfordii HOM05D000811 ORTHO05D004743 1.8e-27 125.9 101 62.4
Actinidia27847 Actinidia chinensis HOM05D000811 ORTHO05D004743 2.3e-27 125.6 84 73.8
Eucgr.J02408 Eucalyptus grandis HOM05D000811 ORTHO05D004743 2.3e-27 125.6 86 69.8
Oeu062504.1 Olea europaea HOM05D000811 ORTHO05D004743 2.3e-27 125.6 86 75.6
QL06p033570 Quercus lobata HOM05D000811 ORTHO05D004743 2.3e-27 125.6 86 68.6
TAR376G0878 Trochodendron aralioides HOM05D000811 ORTHO05D004743 3.1e-27 125.2 84 70.2
ATR0147G012 Amborella trichopoda HOM05D000811 ORTHO05D004743 4.0e-27 124.8 99 58.6
Sed0024520 Sechium edule HOM05D000811 ORTHO05D004743 4.0e-27 124.8 104 61.5
FAN14G0683 Fragaria x ananassa HOM05D000811 ORTHO05D004743 5.2e-27 124.4 85 71.8
SGA_v2.0_scaffold58G20433 Striga asiatica HOM05D000811 ORTHO05D004743 5.2e-27 124.4 85 72.9
Ca_22371_v3 Cicer arietinum L. HOM05D000811 ORTHO05D004743 6.8e-27 124.0 105 61.9
CAN.G1365.1 Capsicum annuum HOM05D000811 ORTHO05D004743 8.9e-27 123.6 110 58.2
MELO3C016378.2 Cucumis melo HOM05D000811 ORTHO05D004743 8.9e-27 123.6 102 59.8
Migut.B00125 Erythranthe guttata HOM05D000811 ORTHO05D004743 8.9e-27 123.6 101 61.4
FvH4_6g24550 Fragaria vesca HOM05D000811 ORTHO05D004743 8.9e-27 123.6 85 71.8
FAN02G2932 Fragaria x ananassa HOM05D000811 ORTHO05D004743 8.9e-27 123.6 85 71.8
SGA_v2.0_scaffold32G13256 Striga asiatica HOM05D000811 ORTHO05D004743 8.9e-27 123.6 85 71.8
EL10As8g23839 Beta vulgaris HOM05D000811 ORTHO05D004743 1.2e-26 123.2 101 59.4
Rhsim05G0067500 Rhododendron simsii HOM05D000811 ORTHO05D004743 1.2e-26 123.2 100 61.0
Sabra07G0010400 Salix brachista HOM05D000811 ORTHO05D004743 1.2e-26 123.2 78 76.9
RcHm_v2.0_Chr3g0483651 Rosa chinensis HOM05D000811 ORTHO05D004743 1.5e-26 122.9 85 70.6
Hund14039 Selenicereus undatus HOM05D000811 ORTHO05D004743 1.5e-26 122.9 100 60.0
CiPaw.07G057300 Carya illinoinensis HOM05D000811 ORTHO05D004743 2.0e-26 122.5 86 68.6
FAN09G3320 Fragaria x ananassa HOM05D000811 ORTHO05D004743 2.0e-26 122.5 85 70.6
Medtr8g076070 Medicago truncatula HOM05D000811 ORTHO05D004743 2.0e-26 122.5 105 60.0
Nn6g32304 Nelumbo nucifera HOM05D000811 ORTHO05D004743 2.0e-26 122.5 99 59.6
BraA07t28059Z Brassica rapa HOM05D000811 ORTHO05D004743 2.6e-26 122.1 85 69.4
CDE05G3463 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 3.4e-26 121.7 97 60.8
Psat4g098480 Pisum sativum HOM05D000811 ORTHO05D004743 3.4e-26 121.7 104 62.5
Sc16g0002050 Simmondsia chinensis HOM05D000811 ORTHO05D004743 3.4e-26 121.7 101 57.4
AUR62043613 Chenopodium quinoa HOM05D000811 ORTHO05D004743 4.4e-26 121.3 80 72.5
AUR62044455 Chenopodium quinoa HOM05D000811 ORTHO05D004743 4.4e-26 121.3 80 72.5
FAN05G0499 Fragaria x ananassa HOM05D000811 ORTHO05D004743 4.4e-26 121.3 85 70.6
Solyc02g062250.3 Solanum lycopersicum HOM05D000811 ORTHO05D004743 4.4e-26 121.3 101 57.4
PGSC0003DMG400019933 Solanum tuberosum HOM05D000811 ORTHO05D004743 4.4e-26 121.3 101 57.4
A07p02600 Brassica napus HOM05D000811 ORTHO05D004743 5.8e-26 120.9 91 65.9
BcaC06g36361 Brassica carinata HOM05D000811 ORTHO05D004743 7.5e-26 120.6 85 68.2
C07p04900 Brassica napus HOM05D000811 ORTHO05D004743 7.5e-26 120.6 85 68.2
BolC7t40891H Brassica oleracea HOM05D000811 ORTHO05D004743 7.5e-26 120.6 85 68.2
CDE09G0022 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 7.5e-26 120.6 99 57.6
GSVIVG01018801001 Vitis vinifera HOM05D000811 ORTHO05D004743 7.5e-26 120.6 84 69.0
AT2G18040 Arabidopsis thaliana HOM05D000811 ORTHO05D004743 9.8e-26 120.2 85 68.2
BcaB08g34786 Brassica carinata HOM05D000811 ORTHO05D004743 9.8e-26 120.2 85 68.2
BraA06t26271Z Brassica rapa HOM05D000811 ORTHO05D004743 9.8e-26 120.2 85 68.2
CsaV3_4G005720 Cucumis sativus L. HOM05D000811 ORTHO05D004743 9.8e-26 120.2 86 67.4
Thhalv10022913m.g Eutrema salsugineum HOM05D000811 ORTHO05D004743 9.8e-26 120.2 85 68.2
Gohir.A11G041500 Gossypium hirsutum HOM05D000811 ORTHO05D004743 9.8e-26 120.2 82 72.0
C06p13450 Brassica napus HOM05D000811 ORTHO05D004743 1.3e-25 119.8 85 68.2
Peaxi162Scf00799g00517 Petunia axillaris HOM05D000811 ORTHO05D004743 1.3e-25 119.8 85 65.9
BcaB03g16590 Brassica carinata HOM05D000811 ORTHO05D004743 1.7e-25 119.4 85 68.2
DCAR_016616 Daucus carota HOM05D000811 ORTHO05D004743 1.7e-25 119.4 87 66.7
A06p33380 Brassica napus HOM05D000811 ORTHO05D004743 2.2e-25 119.0 85 67.1
Sopen02g013220 Solanum pennellii HOM05D000811 ORTHO05D004743 2.2e-25 119.0 101 56.4
THA.LOC104819758 Tarenaya hassleriana HOM05D000811 ORTHO05D004743 2.2e-25 119.0 85 65.9
HPP92_003523 Vanilla planifolia HOM05D000811 ORTHO05D004743 2.2e-25 119.0 85 65.9
Aa31LG8G15220 Aethionema arabicum HOM05D000811 ORTHO05D004743 2.9e-25 118.6 80 71.2
CARHR108530 Cardamine hirsuta HOM05D000811 ORTHO05D004743 2.9e-25 118.6 85 67.1
Sp3g31470 Schrenkiella parvula HOM05D000811 ORTHO05D004743 2.9e-25 118.6 85 67.1
AL3G51190 Arabidopsis lyrata HOM05D000811 ORTHO05D004743 3.7e-25 118.2 85 67.1
CDE02G4615 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 3.7e-25 118.2 99 55.6
THA.LOC104807488 Tarenaya hassleriana HOM05D000811 ORTHO05D004743 4.9e-25 117.9 85 67.1
BolC6t36506H Brassica oleracea HOM05D000811 ORTHO05D004743 6.4e-25 117.5 85 67.1
CDE05G3063 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 1.1e-24 116.7 83 67.5
unitig_0.g45 Utricularia gibba HOM05D000628 ORTHO05D001121 1.1e-24 116.7 83 71.1
C03p58940 Brassica napus HOM05D000811 ORTHO05D004743 1.4e-24 116.3 85 65.9
BolC3t18151H Brassica oleracea HOM05D000811 ORTHO05D004743 1.4e-24 116.3 85 65.9
Carub.0003s3219 Capsella rubella HOM05D000811 ORTHO05D004743 1.4e-24 116.3 85 64.7
unitig_699.g19711 Utricularia gibba HOM05D000811 ORTHO05D004743 3.2e-24 115.2 86 67.4
PSO210G3301 Papaver somniferum HOM05D000811 ORTHO05D004743 4.1e-24 114.8 102 57.8
Os04g0118500 Oryza sativa ssp. japonica HOM05D000811 ORTHO05D004743 7.0e-24 114.0 100 56.0
vmacro17410 Vaccinium macrocarpon HOM05D000811 ORTHO05D004743 1.6e-23 112.8 95 62.1
MSTRG.2701 Avicennia marina HOM05D000811 ORTHO05D004743 2.7e-23 112.1 100 55.0
Migut.H01149 Erythranthe guttata HOM05D000811 ORTHO05D004743 2.7e-23 112.1 101 55.4
SalBow3G3608 Salvia bowleyana HOM05D000811 ORTHO05D004743 1.0e-22 110.2 85 63.5
Zm00001eb067280 Zea mays HOM05D000811 ORTHO05D004743 1.7e-22 109.4 101 57.4
arahy.Tifrunner.gnm1.ann1.9YI44J Arachis hypogaea HOM05D007334 ORTHO05D004743 3.0e-22 108.6 77 68.8
MBI07_g03816_MAGBIO Magnolia biondii HOM05D000811 ORTHO05D004743 3.9e-22 108.2 75 66.7
Zm00001eb419950 Zea mays HOM05D000811 ORTHO05D004743 5.0e-22 107.8 96 56.2
SMO146G0274 Selaginella moellendorffii HOM05D000811 ORTHO05D004743 6.6e-22 107.5 84 59.5
Pp3c20_23120 Physcomitrium patens HOM05D000811 ORTHO05D004743 8.6e-22 107.1 87 60.9
Nitab4.5_0010885g0050 Nicotiana tabacum HOM05D000811 ORTHO05D004743 1.1e-21 106.7 76 67.1
MBI05_g26504_MAGBIO Magnolia biondii HOM05D000811 ORTHO05D004743 1.5e-21 106.3 87 57.5
HPP92_002102 Vanilla planifolia HOM05D000811 ORTHO05D004743 3.3e-21 105.1 86 54.7
AagrBONN_evm.TU.Sc2ySwM_228.1572 Anthoceros agrestis HOM05D000811 ORTHO05D004743 4.3e-21 104.8 98 51.0
Actinidia22989 Actinidia chinensis HOM05D000811 ORTHO05D004743 5.6e-21 104.4 70 68.6
MBI04_g40115_MAGBIO Magnolia biondii HOM05D000811 ORTHO05D004743 7.3e-21 104.0 79 60.8
SEGI_07022 Sequoiadendron giganteum HOM05D000811 ORTHO05D004743 1.6e-20 102.8 79 59.5
Pp3c10_25090 Physcomitrium patens HOM05D000811 ORTHO05D004743 6.2e-20 100.9 87 56.3
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 1.8e-19 99.4 88 60.2
Ah.02g124500 Amaranthus hybridus HOM05D000811 ORTHO05D004743 4.0e-19 98.2 58 81.0
MCO04G419 Micromonas commoda HOM05D000811 ORTHO05D004743 8.3e-17 90.5 95 47.4
Atru.chr3.785 Acer truncatum HOM05D000811 ORTHO05D004743 1.9e-16 89.4 59 69.5
CBR_g552 Chara braunii HOM05D000811 ORTHO05D004743 1.9e-16 89.4 87 50.6
Haze_26720 Corylus avellana HOM05D000811 ORTHO05D004743 1.6e-12 76.3 95 44.2
arahy.Tifrunner.gnm1.ann1.0S2HJN Arachis hypogaea HOM05D007334 ORTHO05D004743 1.4e-11 73.2 74 52.7
PRCOL_00002510 Prasinoderma coloniale HOM05D009714 ORTHO05D004743 2.3e-11 72.4 103 43.7
PSO170G2420 Papaver somniferum HOM05D000811 ORTHO05D004743 3.1e-11 72.0 78 46.2
Actinidia00122 Actinidia chinensis HOM05D000811 ORTHO05D004743 3.4e-10 68.6 44 75.0
Actinidia20649 Actinidia chinensis HOM05D000811 ORTHO05D004743 3.4e-10 68.6 44 75.0
Cre16.g671900 Chlamydomonas reinhardtii HOM05D000811 ORTHO05D004743 2.4e-08 62.4 95 34.7
Nitab4.5_0002096g0060 Nicotiana tabacum HOM05D000811 ORTHO05D004743 2.7e-07 58.9 31 83.9
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 6.0e-07 57.8 85 40.0


User provided reference genes

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