Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0325471 Helianthus annuus HOM05D001900 ORTHO05D003003 7.6e-308 1059.7 541 100.0
Lsat_1_v5_gn_4_152521 Lactuca sativa HOM05D001900 ORTHO05D003003 7.7e-159 564.7 468 69.0
ECA232G3627 Erigeron canadensis HOM05D002962 ORTHO05D003003 1.8e-155 553.5 411 71.8
HanXRQChr09g0261371 Helianthus annuus HOM05D001900 ORTHO05D003003 2.4e-152 543.1 459 65.6
Dinv13503 Davidia involucrata HOM05D001900 ORTHO05D003003 1.8e-107 394.0 526 49.8
Dinv40001 Davidia involucrata HOM05D001900 ORTHO05D003003 7.8e-95 352.1 518 45.8
CSS0012592 Camellia sinensis var. sinensis HOM05D001900 ORTHO05D003003 3.1e-91 340.1 524 46.2
Thecc.01G032400 Theobroma cacao HOM05D001900 ORTHO05D003003 8.7e-86 322.0 519 44.9
Duzib147G0909 Durio zibethinus HOM05D001900 ORTHO05D003003 5.3e-83 312.8 500 44.4
Actinidia36571 Actinidia chinensis HOM05D001900 ORTHO05D003003 2.0e-82 310.8 587 41.4
DCAR_025953 Daucus carota HOM05D001900 ORTHO05D003003 3.8e-81 306.6 542 41.5
Lj2C455T8 Lonicera japonica HOM05D001900 ORTHO05D003003 1.0e-78 298.5 520 41.7
Manes.01G137000 Manihot esculenta HOM05D001900 ORTHO05D003003 3.0e-78 297.0 506 43.5
Eucgr.H03317 Eucalyptus grandis HOM05D001900 ORTHO05D003003 1.1e-77 295.0 515 43.5
Cc07_g09770 Coffea canephora HOM05D001900 ORTHO05D003003 2.5e-77 293.9 467 43.3
Gohir.D03G013400 Gossypium hirsutum HOM05D001900 ORTHO05D003003 5.6e-77 292.7 479 45.1
Gohir.A02G166600 Gossypium hirsutum HOM05D001900 ORTHO05D003003 2.8e-76 290.4 479 45.1
Gorai.003G013700 Gossypium raimondii HOM05D001900 ORTHO05D003003 2.8e-76 290.4 484 44.2
Duzib264G0068 Durio zibethinus HOM05D001900 ORTHO05D003003 5.3e-75 286.2 494 43.1
TAR381G1572 Trochodendron aralioides HOM05D001900 ORTHO05D003003 5.3e-75 286.2 521 43.0
COL.COLO4_22048 Corchorus olitorius HOM05D001900 ORTHO05D003003 1.5e-74 284.6 477 45.1
TAR625G0256 Trochodendron aralioides HOM05D001900 ORTHO05D003003 4.9e-73 279.6 504 42.3
Oeu025184.1 Olea europaea HOM05D001900 ORTHO05D003003 6.5e-73 279.3 512 40.2
CiPaw.02G019500 Carya illinoinensis HOM05D001900 ORTHO05D003003 2.7e-71 273.9 496 40.1
Peaxi162Scf00366g00532 Petunia axillaris HOM05D001900 ORTHO05D003003 3.9e-70 270.0 479 41.8
GSVIVG01018933001 Vitis vinifera HOM05D001900 ORTHO05D003003 1.9e-69 267.7 485 43.1
MELO3C007837.2 Cucumis melo HOM05D001900 ORTHO05D003003 5.7e-69 266.2 456 40.1
Cpa.g.sc6.141 Carica papaya HOM05D001900 ORTHO05D003003 1.6e-68 264.6 512 40.8
CsaV3_6G046400 Cucumis sativus L. HOM05D001900 ORTHO05D003003 1.6e-68 264.6 459 40.3
Cfa004333 Carpinus fangiana HOM05D001900 ORTHO05D003003 2.2e-68 264.2 497 40.8
Solyc02g085060.2 Solanum lycopersicum HOM05D001900 ORTHO05D003003 8.2e-68 262.3 512 40.2
Oeu012897.2 Olea europaea HOM05D001900 ORTHO05D003003 1.4e-67 261.5 528 38.1
Sopen02g029760 Solanum pennellii HOM05D001900 ORTHO05D003003 1.4e-67 261.5 512 40.2
Gorai.008G067000 Gossypium raimondii HOM05D001900 ORTHO05D003003 1.8e-67 261.2 466 42.9
PGR102G2818 Punica granatum HOM05D001900 ORTHO05D003003 9.0e-67 258.8 506 39.7
Ciclev10024944m.g Citrus clementina HOM05D001900 ORTHO05D003003 1.0e-65 255.4 488 41.4
Nitab4.5_0000178g0240 Nicotiana tabacum HOM05D001900 ORTHO05D003003 1.3e-65 255.0 499 39.9
Gohir.D12G063800 Gossypium hirsutum HOM05D001900 ORTHO05D003003 2.2e-65 254.2 466 42.5
Nitab4.5_0007490g0030 Nicotiana tabacum HOM05D001900 ORTHO05D003003 2.9e-65 253.8 498 38.8
Peaxi162Scf00010g01323 Petunia axillaris HOM05D001900 ORTHO05D003003 2.9e-65 253.8 527 38.9
CAN.G358.59 Capsicum annuum HOM05D001900 ORTHO05D003003 1.1e-64 251.9 509 39.5
Potri.005G120901 Populus trichocarpa HOM05D001900 ORTHO05D003003 1.1e-64 251.9 535 35.9
TWI53G0889 Tripterygium wilfordii HOM05D001900 ORTHO05D003003 1.4e-64 251.5 462 44.2
Prupe.7G157200 Prunus persica HOM05D001900 ORTHO05D003003 1.9e-64 251.1 500 41.6
Gohir.A12G063900 Gossypium hirsutum HOM05D001900 ORTHO05D003003 2.5e-64 250.8 468 41.9
MD15G1258100 Malus domestica HOM05D001900 ORTHO05D003003 1.2e-63 248.4 481 41.4
ClCG01G019690 Citrullus lanatus HOM05D001900 ORTHO05D003003 1.0e-62 245.4 469 38.8
MD02G1144400 Malus domestica HOM05D001900 ORTHO05D003003 3.9e-62 243.4 476 40.1
Atru.chr3.617 Acer truncatum HOM05D001900 ORTHO05D003003 6.7e-62 242.7 477 38.8
Migut.H02534 Erythranthe guttata HOM05D001900 ORTHO05D003003 6.7e-62 242.7 454 41.6
Sed0014260 Sechium edule HOM05D001900 ORTHO05D003003 6.7e-62 242.7 467 38.3
Nitab4.5_0007770g0010 Nicotiana tabacum HOM05D001900 ORTHO05D003003 1.5e-61 241.5 488 39.3
MBI10_g18272_MAGBIO Magnolia biondii HOM05D001900 ORTHO05D003003 8.2e-60 235.7 480 38.5
Psat2g158040 Pisum sativum HOM05D001900 ORTHO05D003003 6.5e-57 226.1 487 37.6
FAN28G0904 Fragaria x ananassa HOM05D001900 ORTHO05D003003 2.5e-56 224.2 491 37.5
Haze_15069 Corylus avellana HOM05D001900 ORTHO05D003003 5.5e-56 223.0 503 37.4
Lj2g0000438 Lotus japonicus HOM05D001900 ORTHO05D003003 1.4e-54 218.4 470 38.5
Ca_24869_v3 Cicer arietinum L. HOM05D001900 ORTHO05D003003 1.8e-54 218.0 487 38.0
CANSAT01G3259 Cannabis sativa HOM05D001900 ORTHO05D003003 8.8e-54 215.7 472 38.1
PSO675G4582 Papaver somniferum HOM05D001900 ORTHO05D003003 4.4e-53 213.4 469 37.1
TPR.G2395 Trifolium pratense HOM05D001900 ORTHO05D003003 9.7e-53 212.2 475 37.1
FAN19G1137 Fragaria x ananassa HOM05D001900 ORTHO05D003003 1.7e-52 211.5 491 36.3
FvH4_1g12990 Fragaria vesca HOM05D001900 ORTHO05D003003 3.7e-52 210.3 490 36.1
Phvul.002G032800 Phaseolus vulgaris HOM05D001900 ORTHO05D003003 3.7e-52 210.3 457 37.4
Glyma.01G172500 Glycine max HOM05D001900 ORTHO05D003003 4.8e-52 209.9 470 36.2
Potri.007G022900 Populus trichocarpa HOM05D001900 ORTHO05D003003 4.8e-52 209.9 263 51.0
RcHm_v2.0_Chr2g0101071 Rosa chinensis HOM05D001900 ORTHO05D003003 4.8e-52 209.9 519 34.9
PSO541G0976 Papaver somniferum HOM05D001900 ORTHO05D003003 2.4e-51 207.6 476 37.2
Glyma.11G070700 Glycine max HOM05D001900 ORTHO05D003003 6.9e-51 206.1 476 36.6
Aqoxy6G01148 Aquilegia oxysepala HOM05D001900 ORTHO05D003003 9.1e-51 205.7 535 35.7
FAN23G0213 Fragaria x ananassa HOM05D001900 ORTHO05D003003 1.2e-50 205.3 484 36.2
Medtr5g020810 Medicago truncatula HOM05D001900 ORTHO05D003003 4.5e-50 203.4 480 36.2
FAN26G2681 Fragaria x ananassa HOM05D001900 ORTHO05D003003 7.7e-50 202.6 490 35.5
Nitab4.5_0000344g0190 Nicotiana tabacum HOM05D001900 ORTHO05D003003 8.5e-49 199.1 561 32.3
arahy.Tifrunner.gnm1.ann1.1IN98U Arachis hypogaea HOM05D000342 ORTHO05D000217 2.1e-47 194.5 488 36.9
VMungo1215G0025 Vigna mungo HOM05D001900 ORTHO05D003003 1.4e-46 191.8 454 36.3
Zm00001eb188350 Zea mays HOM05D001900 ORTHO05D003003 6.1e-39 166.4 473 33.8
SalBow5G0358 Salvia bowleyana HOM05D001900 ORTHO05D003003 2.2e-36 157.9 236 47.9
SalBow5G2022 Salvia bowleyana HOM05D001900 ORTHO05D003003 2.2e-36 157.9 236 47.9
Migut.L00022 Erythranthe guttata HOM05D001900 ORTHO05D003003 2.4e-35 154.5 390 36.4
CAN.G1336.4 Capsicum annuum HOM05D001900 ORTHO05D003003 7.0e-35 152.9 227 42.3
Os02g0704966 Oryza sativa ssp. japonica HOM05D001900 ORTHO05D003003 1.2e-34 152.1 474 31.2
QL06p046951 Quercus lobata HOM05D001900 ORTHO05D003003 9.8e-29 132.5 495 28.5
ATR0568G141 Amborella trichopoda HOM05D001900 ORTHO05D003003 3.1e-27 127.5 155 51.0
Peaxi162Scf00010g01213 Petunia axillaris HOM05D001900 ORTHO05D003003 2.7e-26 124.4 204 40.7
SEGI_23362 Sequoiadendron giganteum HOM05D001900 ORTHO05D003003 1.9e-11 75.1 399 27.8
VMungo1215G3194 Vigna mungo HOM05D001900 ORTHO05D003003 9.2e-11 72.8 60 61.7
Haze_15073 Corylus avellana HOM05D000342 ORTHO05D000217 3.9e-09 67.4 114 40.4
AagrBONN_evm.TU.Sc2ySwM_117.1440 Anthoceros agrestis HOM05D001900 ORTHO05D003003 4.3e-08 63.9 77 39.0
Potri.007G022950 Populus trichocarpa HOM05D001900 ORTHO05D050562 4.3e-08 63.9 152 38.8
Pp3c25_5630 Physcomitrium patens HOM05D001900 ORTHO05D003003 5.6e-08 63.5 64 48.4
CBR_g29296 Chara braunii HOM05D001900 ORTHO05D003003 1.2e-07 62.4 64 48.4
CSS0049577 Camellia sinensis var. sinensis HOM05D001900 ORTHO05D009822 2.8e-07 61.2 76 42.1
Mapoly0170s0033 Marchantia polymorpha HOM05D001900 ORTHO05D003003 2.8e-07 61.2 64 50.0
Sed0002012 Sechium edule HOM05D001900 ORTHO05D009822 3.6e-07 60.8 74 36.5
A02p38740 Brassica napus HOM05D001900 ORTHO05D003003 4.7e-07 60.5 64 48.4
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 4.7e-07 60.5 67 46.3
BraA02t08851Z Brassica rapa HOM05D001900 ORTHO05D003003 4.7e-07 60.5 64 48.4
AT5G27740 Arabidopsis thaliana HOM05D001900 ORTHO05D003003 6.2e-07 60.1 64 48.4
BcaB07g34200 Brassica carinata HOM05D001900 ORTHO05D003003 6.2e-07 60.1 64 48.4
Cre16.g679950 Chlamydomonas reinhardtii HOM05D001900 ORTHO05D003003 6.2e-07 60.1 64 50.0
Gohir.A13G163700 Gossypium hirsutum HOM05D001900 ORTHO05D003003 6.2e-07 60.1 64 46.9
Gohir.D13G166600 Gossypium hirsutum HOM05D001900 ORTHO05D003003 6.2e-07 60.1 64 46.9
Gorai.013G195900 Gossypium raimondii HOM05D001900 ORTHO05D003003 6.2e-07 60.1 64 46.9
AL6G39200 Arabidopsis lyrata HOM05D001900 ORTHO05D003003 8.0e-07 59.7 64 48.4
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 8.0e-07 59.7 64 48.4
BraA06t26658Z Brassica rapa HOM05D001900 ORTHO05D003003 8.0e-07 59.7 64 48.4
Carub.0006s2482 Capsella rubella HOM05D001900 ORTHO05D003003 8.0e-07 59.7 64 48.4
CARHR186260 Cardamine hirsuta HOM05D001900 ORTHO05D003003 8.0e-07 59.7 64 48.4
AUR62038453 Chenopodium quinoa HOM05D001900 ORTHO05D003003 8.0e-07 59.7 64 46.9
AUR62042150 Chenopodium quinoa HOM05D001900 ORTHO05D003003 8.0e-07 59.7 64 46.9
Lj4A204T64 Lonicera japonica HOM05D001900 ORTHO05D003003 8.0e-07 59.7 51 62.7
Sp2g20910 Schrenkiella parvula HOM05D001900 ORTHO05D003003 8.0e-07 59.7 64 48.4
Duzib128G0536 Durio zibethinus HOM05D001900 ORTHO05D003003 1.1e-06 59.3 64 46.9
QL07p018995 Quercus lobata HOM05D001900 ORTHO05D003003 1.1e-06 59.3 64 45.3
Sabra07G0019900 Salix brachista HOM05D001900 ORTHO05D050562 1.1e-06 59.3 146 39.0
HPP92_015892 Vanilla planifolia HOM05D001900 ORTHO05D003003 1.1e-06 59.3 66 47.0
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 1.4e-06 58.9 64 48.4
BolC2t11892H Brassica oleracea HOM05D001900 ORTHO05D003003 1.4e-06 58.9 64 48.4
COL.COLO4_28637 Corchorus olitorius HOM05D001900 ORTHO05D003003 1.4e-06 58.9 64 45.3
MELO3C008864.2 Cucumis melo HOM05D001900 ORTHO05D003003 1.4e-06 58.9 64 43.8
SGA_v2.0_scaffold69G23218 Striga asiatica HOM05D001900 ORTHO05D003003 1.4e-06 58.9 70 44.3
ClCG04G004690 Citrullus lanatus HOM05D001900 ORTHO05D003003 1.8e-06 58.5 67 41.8
Thhalv10004490m.g Eutrema salsugineum HOM05D001900 ORTHO05D003003 1.8e-06 58.5 64 46.9
Sed0019827 Sechium edule HOM05D001900 ORTHO05D003003 1.8e-06 58.5 64 43.8
SGA_v2.0_scaffold66G22376 Striga asiatica HOM05D001900 ORTHO05D003003 1.8e-06 58.5 67 44.8
Aa31LG11G9510 Aethionema arabicum HOM05D001900 ORTHO05D003003 2.3e-06 58.2 64 46.9
EL10Ac5g11694 Beta vulgaris HOM05D001900 ORTHO05D003003 2.3e-06 58.2 64 45.3
BcaC03g17801 Brassica carinata HOM05D001900 ORTHO05D003003 2.3e-06 58.2 64 48.4
CsaV3_4G031600 Cucumis sativus L. HOM05D001900 ORTHO05D003003 2.3e-06 58.2 64 43.8
Os03g0792600 Oryza sativa ssp. japonica HOM05D001900 ORTHO05D003003 2.3e-06 58.2 64 45.3
ATR0697G074 Amborella trichopoda HOM05D001900 ORTHO05D003003 3.1e-06 57.8 64 46.9
AagrBONN_evm.TU.Sc2ySwM_117.2372 Anthoceros agrestis HOM05D001900 ORTHO05D003003 3.1e-06 57.8 64 46.9
Cpa.g.sc161.34 Carica papaya HOM05D001900 ORTHO05D003003 3.1e-06 57.8 64 45.3
Duzib177G0529 Durio zibethinus HOM05D001900 ORTHO05D003003 3.1e-06 57.8 64 45.3
ECA238G2580 Erigeron canadensis HOM05D001900 ORTHO05D003003 3.1e-06 57.8 64 45.3
Manes.08G153200 Manihot esculenta HOM05D001900 ORTHO05D003003 3.1e-06 57.8 64 45.3
Potri.019G040000 Populus trichocarpa HOM05D001900 ORTHO05D003003 3.1e-06 57.8 64 45.3
Thecc.03G317800 Theobroma cacao HOM05D001900 ORTHO05D009822 3.1e-06 57.8 63 39.7
Thecc.05G242500 Theobroma cacao HOM05D001900 ORTHO05D003003 3.1e-06 57.8 64 45.3
BcaB04g19686 Brassica carinata HOM05D001900 ORTHO05D003003 4.0e-06 57.4 64 46.9
CDE07G1554 Ceratophyllum demersum HOM05D001900 ORTHO05D003003 4.0e-06 57.4 64 43.8
Lsat_1_v5_gn_2_103681 Lactuca sativa HOM05D001900 ORTHO05D003003 4.0e-06 57.4 64 45.3
PGR042G3124 Punica granatum HOM05D001900 ORTHO05D003003 4.0e-06 57.4 64 43.8
Migut.J01540 Erythranthe guttata HOM05D001900 ORTHO05D003003 5.2e-06 57.0 64 45.3
HanXRQChr07g0196281 Helianthus annuus HOM05D001900 ORTHO05D003003 5.2e-06 57.0 64 45.3
Lj2g0025638 Lotus japonicus HOM05D001900 ORTHO05D003003 5.2e-06 57.0 64 45.3
Nn2g14554 Nelumbo nucifera HOM05D001900 ORTHO05D003003 5.2e-06 57.0 66 43.9
Peaxi162Scf00258g00523 Petunia axillaris HOM05D001900 ORTHO05D003003 5.2e-06 57.0 64 45.3
Sabra19G0050300 Salix brachista HOM05D001900 ORTHO05D003003 5.2e-06 57.0 64 45.3
Cc06_g21450 Coffea canephora HOM05D001900 ORTHO05D003003 6.8e-06 56.6 64 43.8
Eucgr.A02138 Eucalyptus grandis HOM05D001900 ORTHO05D003003 6.8e-06 56.6 67 40.3
RcHm_v2.0_Chr3g0496081 Rosa chinensis HOM05D001900 ORTHO05D003003 6.8e-06 56.6 70 40.0
TWI32G1012 Tripterygium wilfordii HOM05D001900 ORTHO05D003003 6.8e-06 56.6 64 43.8
GSVIVG01026718001 Vitis vinifera HOM05D001900 ORTHO05D009822 6.8e-06 56.6 58 43.1
BolC7t44638H Brassica oleracea HOM05D001900 ORTHO05D003003 8.9e-06 56.2 64 46.9
Ciclev10020854m.g Citrus clementina HOM05D001900 ORTHO05D003003 8.9e-06 56.2 64 43.8
DCAR_013487 Daucus carota HOM05D001900 ORTHO05D003003 8.9e-06 56.2 64 43.8
Dinv25044 Davidia involucrata HOM05D001900 ORTHO05D003003 8.9e-06 56.2 64 43.8
Lj1A1072T25 Lonicera japonica HOM05D001900 ORTHO05D003003 8.9e-06 56.2 64 43.8
Rhsim03G0049600 Rhododendron simsii HOM05D001900 ORTHO05D003003 8.9e-06 56.2 64 43.8
SalBow6G4052 Salvia bowleyana HOM05D001900 ORTHO05D003003 8.9e-06 56.2 64 45.3
SalBow6G6368 Salvia bowleyana HOM05D001900 ORTHO05D003003 8.9e-06 56.2 64 45.3
TWI23G0622 Tripterygium wilfordii HOM05D001900 ORTHO05D009822 8.9e-06 56.2 83 36.1


User provided reference genes

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