Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr11g0324701 Helianthus annuus HOM05D001047 ORTHO05D000768 1.7e-79 299.3 148 100.0
HanXRQChr04g0094401 Helianthus annuus HOM05D001047 ORTHO05D000768 4.8e-55 218.0 125 90.4
Lsat_1_v5_gn_1_37841 Lactuca sativa HOM05D001047 ORTHO05D000768 1.1e-25 120.6 142 51.4
HanXRQChr12g0360231 Helianthus annuus HOM05D001047 ORTHO05D000768 3.7e-15 85.5 144 41.0
HanXRQChr12g0360211 Helianthus annuus HOM05D001047 ORTHO05D000768 4.9e-15 85.1 150 39.3
HanXRQChr12g0360241 Helianthus annuus HOM05D001047 ORTHO05D000768 1.9e-14 83.2 145 41.4
Lsat_1_v5_gn_5_137041 Lactuca sativa HOM05D001047 ORTHO05D000768 5.4e-14 81.6 137 40.9
Lsat_1_v5_gn_4_91521 Lactuca sativa HOM05D001047 ORTHO05D000768 1.2e-13 80.5 138 38.4
Actinidia32203 Actinidia chinensis HOM05D001047 ORTHO05D000768 4.6e-13 78.6 156 35.9
HanXRQChr11g0351101 Helianthus annuus HOM05D001047 ORTHO05D000768 6.0e-13 78.2 133 42.1
HanXRQChr12g0360201 Helianthus annuus HOM05D001047 ORTHO05D000768 6.0e-13 78.2 141 36.9
ECA234G1201 Erigeron canadensis HOM05D001047 ORTHO05D000768 3.9e-12 75.5 151 35.8
CsaV3_3G030830 Cucumis sativus L. HOM05D001047 ORTHO05D000768 6.6e-12 74.7 128 35.2
HanXRQChr09g0277101 Helianthus annuus HOM05D001047 ORTHO05D000768 1.9e-11 73.2 140 40.0
ClCG07G014490 Citrullus lanatus HOM05D001047 ORTHO05D000768 7.3e-11 71.2 132 34.8
Hma1.2p1_0229F.1_g096740 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 2.1e-10 69.7 104 39.4
MELO3C022678.2 Cucumis melo HOM05D001047 ORTHO05D000768 8.1e-10 67.8 120 35.8
Lalb_Chr23g0276321 Lupinus albus HOM05D001047 ORTHO05D000768 2.4e-09 66.2 120 38.3
Manes.11G016700 Manihot esculenta HOM05D001047 ORTHO05D000768 2.4e-09 66.2 154 33.8
A02p19630 Brassica napus HOM05D001047 ORTHO05D000768 3.1e-09 65.9 109 33.9
BraA02t06999Z Brassica rapa HOM05D001047 ORTHO05D000768 3.1e-09 65.9 109 33.9
MBI13_g00692_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 3.1e-09 65.9 114 38.6
Ca_02220_v3 Cicer arietinum L. HOM05D001047 ORTHO05D000768 4.0e-09 65.5 112 37.5
BcaB03g12929 Brassica carinata HOM05D001047 ORTHO05D000768 5.2e-09 65.1 94 43.6
Medtr5g013520 Medicago truncatula HOM05D001047 ORTHO05D000768 5.2e-09 65.1 101 38.6
TPR.G40124 Trifolium pratense HOM05D001047 ORTHO05D000768 5.2e-09 65.1 108 35.2
Cfa003512 Carpinus fangiana HOM05D001047 ORTHO05D000768 6.8e-09 64.7 105 41.0
CAN.G1661.25 Capsicum annuum HOM05D001047 ORTHO05D000768 8.9e-09 64.3 142 34.5
Glyma.06G013700 Glycine max HOM05D001047 ORTHO05D000768 8.9e-09 64.3 114 34.2
Glyma.09G071600 Glycine max HOM05D001047 ORTHO05D000768 8.9e-09 64.3 140 32.9
Os03g0402800 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 8.9e-09 64.3 106 37.7
arahy.Tifrunner.gnm1.ann1.W1F2QM Arachis hypogaea HOM05D001047 ORTHO05D000768 1.2e-08 63.9 131 32.1
Gohir.A05G034800 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.2e-08 63.9 109 39.4
Cfa002963 Carpinus fangiana HOM05D001047 ORTHO05D000768 1.5e-08 63.5 122 33.6
Hma1.2p1_0090F.1_g046100 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 1.5e-08 63.5 109 35.8
PSO386G0059 Papaver somniferum HOM05D001047 ORTHO05D000768 1.5e-08 63.5 126 33.3
Dinv20411 Davidia involucrata HOM05D001047 ORTHO05D000768 2.0e-08 63.2 150 29.3
HanXRQChr15g0497141 Helianthus annuus HOM05D001047 ORTHO05D000768 2.0e-08 63.2 129 38.8
MD17G1164400 Malus domestica HOM05D001047 ORTHO05D000768 2.0e-08 63.2 96 39.6
PGSC0003DMG400004367 Solanum tuberosum HOM05D001047 ORTHO05D000768 2.0e-08 63.2 133 35.3
Haze_26039 Corylus avellana HOM05D001047 ORTHO05D000768 2.6e-08 62.8 123 35.0
HanXRQChr10g0311841 Helianthus annuus HOM05D001047 ORTHO05D000768 2.6e-08 62.8 94 42.6
Hma1.2p1_0090F.1_g046090 Hydrangea macrophylla HOM05D001047 ORTHO05D000768 2.6e-08 62.8 109 35.8
PSO724G1109 Papaver somniferum HOM05D001047 ORTHO05D000768 2.6e-08 62.8 90 38.9
Prupe.3G037800 Prunus persica HOM05D001047 ORTHO05D000768 2.6e-08 62.8 138 34.8
Gohir.A08G246300 Gossypium hirsutum HOM05D001047 ORTHO05D000768 3.4e-08 62.4 103 38.8
PGR142G0888 Punica granatum HOM05D001047 ORTHO05D000768 3.4e-08 62.4 119 35.3
arahy.Tifrunner.gnm1.ann1.0AWF5M Arachis hypogaea HOM05D001047 ORTHO05D000768 4.4e-08 62.0 131 31.3
Cc04_g01080 Coffea canephora HOM05D001047 ORTHO05D000768 4.4e-08 62.0 165 32.1
Haze_16063 Corylus avellana HOM05D001047 ORTHO05D000768 4.4e-08 62.0 92 41.3
Sc18g0002760 Simmondsia chinensis HOM05D001047 ORTHO05D000768 4.4e-08 62.0 92 39.1
Sopen07g021770 Solanum pennellii HOM05D001047 ORTHO05D000768 4.4e-08 62.0 128 35.9
HPP92_004173 Vanilla planifolia HOM05D001047 ORTHO05D000768 4.4e-08 62.0 89 41.6
Gorai.004G285100 Gossypium raimondii HOM05D001047 ORTHO05D000768 5.8e-08 61.6 111 37.8
Medtr5g013530 Medicago truncatula HOM05D001047 ORTHO05D000768 5.8e-08 61.6 113 36.3
TAR624G0161 Trochodendron aralioides HOM05D001047 ORTHO05D000768 5.8e-08 61.6 91 45.1
CANSAT56G3467 Cannabis sativa HOM05D001047 ORTHO05D000768 7.6e-08 61.2 137 31.4
CANSAT56G4180 Cannabis sativa HOM05D001047 ORTHO05D000768 7.6e-08 61.2 137 31.4
Glyma.04G013800 Glycine max HOM05D001047 ORTHO05D000768 7.6e-08 61.2 112 33.0
Sopen12g023880 Solanum pennellii HOM05D001047 ORTHO05D000768 7.6e-08 61.2 133 34.6
PGSC0003DMG400029237 Solanum tuberosum HOM05D001047 ORTHO05D000768 7.6e-08 61.2 130 38.5
CAN.G1168.1 Capsicum annuum HOM05D001047 ORTHO05D000768 9.9e-08 60.8 133 35.3
Peaxi162Scf00533g00059 Petunia axillaris HOM05D001047 ORTHO05D000768 9.9e-08 60.8 120 37.5
Solyc07g042170.3 Solanum lycopersicum HOM05D001047 ORTHO05D000768 9.9e-08 60.8 128 35.9
Duzib150G0095 Durio zibethinus HOM05D001047 ORTHO05D000768 1.3e-07 60.5 111 35.1
Glyma.01G204400 Glycine max HOM05D001047 ORTHO05D000768 1.3e-07 60.5 119 32.8
Phvul.002G002000 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 1.3e-07 60.5 103 31.1
Potri.003G068900 Populus trichocarpa HOM05D001047 ORTHO05D000768 1.3e-07 60.5 117 36.8
Thecc.09G073600 Theobroma cacao HOM05D001047 ORTHO05D000768 1.3e-07 60.5 128 32.8
BcaC07g38985 Brassica carinata HOM05D000130 ORTHO05D000768 1.7e-07 60.1 104 37.5
C08p19270 Brassica napus HOM05D001047 ORTHO05D000768 1.7e-07 60.1 104 37.5
BolC8t49545H Brassica oleracea HOM05D001047 ORTHO05D000768 1.7e-07 60.1 104 37.5
Gohir.D05G036200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.7e-07 60.1 106 37.7
Gorai.009G036800 Gossypium raimondii HOM05D001047 ORTHO05D000768 1.7e-07 60.1 106 37.7
Lalb_Chr05g0214211 Lupinus albus HOM05D001047 ORTHO05D000768 1.7e-07 60.1 121 33.9
Medtr5g013515 Medicago truncatula HOM05D001047 ORTHO05D000768 1.7e-07 60.1 92 38.0
Nitab4.5_0004234g0080 Nicotiana tabacum HOM05D001047 ORTHO05D000768 1.7e-07 60.1 142 36.6
GSVIVG01015042001 Vitis vinifera HOM05D001047 ORTHO05D000768 1.7e-07 60.1 124 33.9
C02p32160 Brassica napus HOM05D001047 ORTHO05D000768 2.2e-07 59.7 109 31.2
Gohir.A06G078400 Gossypium hirsutum HOM05D001047 ORTHO05D000768 2.2e-07 59.7 125 34.4
Solyc12g049400.2 Solanum lycopersicum HOM05D001047 ORTHO05D000768 2.2e-07 59.7 133 34.6
CAN.G1243.4 Capsicum annuum HOM05D001047 ORTHO05D000768 2.9e-07 59.3 112 34.8
DCAR_022663 Daucus carota HOM05D001047 ORTHO05D000768 2.9e-07 59.3 97 38.1
Gohir.D08G267400 Gossypium hirsutum HOM05D001047 ORTHO05D000768 2.9e-07 59.3 108 38.0
Lalb_Chr12g0200271 Lupinus albus HOM05D001047 ORTHO05D000768 2.9e-07 59.3 90 40.0
Nitab4.5_0000343g0360 Nicotiana tabacum HOM05D001047 ORTHO05D000768 2.9e-07 59.3 131 38.9
CiPaw.04G141300 Carya illinoinensis HOM05D001047 ORTHO05D000768 3.8e-07 58.9 122 33.6
CDE11G0879 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 3.8e-07 58.9 153 32.0
Duzib187G0215 Durio zibethinus HOM05D001047 ORTHO05D000768 3.8e-07 58.9 111 35.1
PGR044G1306 Punica granatum HOM05D001047 ORTHO05D000768 3.8e-07 58.9 102 37.3
Rhsim08G0241000 Rhododendron simsii HOM05D001047 ORTHO05D000768 3.8e-07 58.9 146 34.9
SalBow5G2121 Salvia bowleyana HOM05D001047 ORTHO05D000768 3.8e-07 58.9 120 35.0
VMungo1215G0723 Vigna mungo HOM05D001047 ORTHO05D000768 3.8e-07 58.9 102 32.4
CDE06G1940 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 4.9e-07 58.5 122 33.6
DCAR_007653 Daucus carota HOM05D001047 ORTHO05D000768 4.9e-07 58.5 117 35.9
DCAR_022665 Daucus carota HOM05D001047 ORTHO05D000768 4.9e-07 58.5 109 34.9
Duzib168G2328 Durio zibethinus HOM05D001047 ORTHO05D000768 4.9e-07 58.5 100 42.0
Lalb_Chr07g0181301 Lupinus albus HOM05D001047 ORTHO05D000768 4.9e-07 58.5 113 32.7
Lalb_Chr13g0299341 Lupinus albus HOM05D001047 ORTHO05D000768 4.9e-07 58.5 126 36.5
MD15G1220400 Malus domestica HOM05D001047 ORTHO05D000768 4.9e-07 58.5 135 31.1
Nitab4.5_0000073g0270 Nicotiana tabacum HOM05D001047 ORTHO05D000768 4.9e-07 58.5 142 35.2
Psat2g175680 Pisum sativum HOM05D001047 ORTHO05D000768 4.9e-07 58.5 111 33.3
Prupe.7G194800 Prunus persica HOM05D001047 ORTHO05D000768 4.9e-07 58.5 133 31.6
vmacro15051 Vaccinium macrocarpon HOM05D001047 ORTHO05D000768 4.9e-07 58.5 98 36.7
arahy.Tifrunner.gnm1.ann1.76C240 Arachis hypogaea HOM05D001047 ORTHO05D000768 6.4e-07 58.2 90 40.0
Lj4g0027094 Lotus japonicus HOM05D001047 ORTHO05D000768 6.4e-07 58.2 137 29.2
TPR.G31421 Trifolium pratense HOM05D001047 ORTHO05D000768 6.4e-07 58.2 117 32.5
arahy.Tifrunner.gnm1.ann1.BH211Y Arachis hypogaea HOM05D001047 ORTHO05D000768 8.4e-07 57.8 90 40.0
CSS0010510 Camellia sinensis var. sinensis HOM05D001047 ORTHO05D000768 8.4e-07 57.8 109 39.4
CiPaw.02G133900 Carya illinoinensis HOM05D001047 ORTHO05D000768 8.4e-07 57.8 94 44.7
CDE05G0290 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 8.4e-07 57.8 103 34.0
CDE05G0578 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 8.4e-07 57.8 93 36.6
Cc06_g12500 Coffea canephora HOM05D001047 ORTHO05D000768 8.4e-07 57.8 116 36.2
Dinv25535 Davidia involucrata HOM05D001047 ORTHO05D000768 8.4e-07 57.8 158 29.7
Gohir.D06G077500 Gossypium hirsutum HOM05D001047 ORTHO05D000768 8.4e-07 57.8 125 34.4
Gorai.010G090600 Gossypium raimondii HOM05D001047 ORTHO05D000768 8.4e-07 57.8 125 34.4
Manes.04G147900 Manihot esculenta HOM05D001047 ORTHO05D000768 8.4e-07 57.8 114 35.1
Os07g0615200 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 8.4e-07 57.8 108 36.1
Zm00001eb109190 Zea mays HOM05D001047 ORTHO05D000768 8.4e-07 57.8 104 34.6
CDE04G3301 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 1.1e-06 57.4 124 36.3
Glyma.15G179600 Glycine max HOM05D001047 ORTHO05D000768 1.1e-06 57.4 140 30.7
HanXRQChr12g0354451 Helianthus annuus HOM05D001047 ORTHO05D000768 1.1e-06 57.4 90 40.0
Lj6g0004228 Lotus japonicus HOM05D001047 ORTHO05D000768 1.1e-06 57.4 134 30.6
Psat1g136080 Pisum sativum HOM05D001047 ORTHO05D000768 1.1e-06 57.4 88 38.6
QL05p003803 Quercus lobata HOM05D001047 ORTHO05D000768 1.1e-06 57.4 116 32.8
QL11p001290 Quercus lobata HOM05D001047 ORTHO05D000768 1.1e-06 57.4 139 31.7
BolC2t09254H Brassica oleracea HOM05D001047 ORTHO05D000768 1.9e-06 56.6 109 30.3
CDE05G1786 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 1.9e-06 56.6 120 35.8
Eucgr.C03301 Eucalyptus grandis HOM05D001047 ORTHO05D000768 1.9e-06 56.6 119 37.0
HPP92_026310 Vanilla planifolia HOM05D001047 ORTHO05D000768 1.9e-06 56.6 97 37.1
BcaC08g46928 Brassica carinata HOM05D001047 ORTHO05D000768 2.4e-06 56.2 110 32.7
BolC5t30457H Brassica oleracea HOM05D001047 ORTHO05D000768 2.4e-06 56.2 89 37.1
CSS0031905 Camellia sinensis var. sinensis HOM05D001047 ORTHO05D000768 2.4e-06 56.2 187 26.7
ECA247G0040 Erigeron canadensis HOM05D001047 ORTHO05D000768 2.4e-06 56.2 128 34.4
Glyma.11G038600 Glycine max HOM05D001047 ORTHO05D000768 2.4e-06 56.2 104 32.7
Rhsim03G0226700 Rhododendron simsii HOM05D001047 ORTHO05D000768 2.4e-06 56.2 160 32.5
Actinidia30242 Actinidia chinensis HOM05D001047 ORTHO05D000768 3.2e-06 55.8 111 39.6
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 3.2e-06 55.8 95 38.9
A08p29960 Brassica napus HOM05D001047 ORTHO05D000768 3.2e-06 55.8 126 33.3
BraA08t34931Z Brassica rapa HOM05D001047 ORTHO05D000768 3.2e-06 55.8 102 38.2
COL.COLO4_18064 Corchorus olitorius HOM05D001047 ORTHO05D000768 3.2e-06 55.8 118 34.7
MD02G1096100 Malus domestica HOM05D001047 ORTHO05D000768 3.2e-06 55.8 136 31.6
SGA_v2.0_scaffold297G47585 Striga asiatica HOM05D001047 ORTHO05D000768 3.2e-06 55.8 109 36.7
Zm00001eb327450 Zea mays HOM05D001047 ORTHO05D000768 3.2e-06 55.8 96 37.5
BcaC05g25812 Brassica carinata HOM05D000130 ORTHO05D000768 4.2e-06 55.5 90 35.6
CiPaw.03G203400 Carya illinoinensis HOM05D001047 ORTHO05D000768 4.2e-06 55.5 141 28.4
Manes.16G093500 Manihot esculenta HOM05D001047 ORTHO05D000768 4.2e-06 55.5 136 33.1
Peaxi162Scf00928g00130 Petunia axillaris HOM05D001047 ORTHO05D000768 4.2e-06 55.5 133 33.8
Phvul.009G225300 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 4.2e-06 55.5 124 33.1
Hund05721 Selenicereus undatus HOM05D001047 ORTHO05D000768 4.2e-06 55.5 91 36.3
SGA_v2.0_scaffold21G09523 Striga asiatica HOM05D001047 ORTHO05D000768 4.2e-06 55.5 90 37.8
THA.LOC104806552 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 4.2e-06 55.5 107 32.7
VMungo1347G0001 Vigna mungo HOM05D001047 ORTHO05D000768 4.2e-06 55.5 127 32.3
BraA10t43991Z Brassica rapa HOM05D001047 ORTHO05D000768 5.4e-06 55.1 149 25.5
CsaV3_1G041270 Cucumis sativus L. HOM05D001047 ORTHO05D000768 5.4e-06 55.1 126 34.1
Os09g0439200 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 5.4e-06 55.1 96 37.5
Phvul.003G129200 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 5.4e-06 55.1 106 34.9
Potri.006G139400 Populus trichocarpa HOM05D001047 ORTHO05D000768 5.4e-06 55.1 165 29.1
BcaB07g31928 Brassica carinata HOM05D001047 ORTHO05D000768 7.1e-06 54.7 114 32.5
A10p19160 Brassica napus HOM05D001047 ORTHO05D000768 7.1e-06 54.7 149 26.2
Thhalv10013955m.g Eutrema salsugineum HOM05D001047 ORTHO05D000768 7.1e-06 54.7 119 31.9
Lalb_Chr08g0232721 Lupinus albus HOM05D001047 ORTHO05D000768 7.1e-06 54.7 115 33.0
Nitab4.5_0004322g0050 Nicotiana tabacum HOM05D001047 ORTHO05D000768 7.1e-06 54.7 93 39.8
Oeu025295.1 Olea europaea HOM05D001047 ORTHO05D000768 7.1e-06 54.7 125 32.0
Sopen12g004170 Solanum pennellii HOM05D001047 ORTHO05D000768 7.1e-06 54.7 115 36.5
SGA_v2.0_scaffold31G12677 Striga asiatica HOM05D001047 ORTHO05D000768 7.1e-06 54.7 100 37.0
Zm00001eb019470 Zea mays HOM05D001047 ORTHO05D000768 7.1e-06 54.7 98 35.7
BcaB02g06975 Brassica carinata HOM05D001047 ORTHO05D000768 9.2e-06 54.3 107 32.7
Glyma.13G112000 Glycine max HOM05D001047 ORTHO05D000768 9.2e-06 54.3 107 33.6
Lsat_1_v5_gn_5_139561 Lactuca sativa HOM05D001047 ORTHO05D000768 9.2e-06 54.3 94 39.4
Lj7A689T75 Lonicera japonica HOM05D001047 ORTHO05D000768 9.2e-06 54.3 91 37.4
Lalb_Chr11g0074131 Lupinus albus HOM05D001047 ORTHO05D000768 9.2e-06 54.3 131 34.4
Sc08g0009060 Simmondsia chinensis HOM05D001047 ORTHO05D000768 9.2e-06 54.3 97 35.1
TWI34G1575 Tripterygium wilfordii HOM05D001047 ORTHO05D000768 9.2e-06 54.3 90 40.0
HPP92_011064 Vanilla planifolia HOM05D001047 ORTHO05D000768 9.2e-06 54.3 87 42.5


User provided reference genes

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