Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 100.0
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 100.0
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 100.0
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 100.0
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 100.0
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 100.0
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 100.0
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 100.0
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 100.0
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 100.0
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-47 192.6 94 100.0
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 96.8
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 5.8e-46 187.2 94 96.8
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 95.7
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 95.7
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 95.7
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 95.7
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 95.7
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 95.7
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 95.7
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 6.4e-45 183.7 94 94.7
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 8.4e-45 183.3 94 94.7
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 8.4e-45 183.3 94 94.7
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 8.4e-45 183.3 94 94.7
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 2.4e-44 181.8 93 94.6
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 4.2e-44 181.0 94 93.6
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 92.6
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 92.6
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 92.6
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 92.6
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 92.6
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 5.4e-44 180.6 94 92.6
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.1e-44 180.3 94 92.6
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 93.6
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.1e-43 178.7 94 91.5
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 1.7e-42 175.6 94 91.5
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.7e-42 175.6 94 92.6
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 1.7e-42 175.6 94 92.6
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.3e-42 175.3 94 91.5
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 6.6e-42 173.7 94 90.4
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 8.7e-42 173.3 94 91.5
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-41 172.9 92 88.0
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 1.5e-41 172.6 83 100.0
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.9e-41 172.2 94 89.4
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 9.6e-41 169.9 82 100.0
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.3e-40 169.5 94 88.3
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.6e-40 169.1 94 89.4
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 88.3
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 88.3
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 88.3
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 88.3
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 2.8e-40 168.3 83 97.6
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 3.6e-40 167.9 94 89.4
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 6.2e-40 167.2 94 86.2
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.2e-40 167.2 94 87.2
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 1.1e-39 166.4 94 87.2
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 1.4e-39 166.0 94 87.2
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 7.6e-38 160.2 81 95.1
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.3e-37 159.5 82 92.7
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-37 159.5 94 83.0
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-37 159.5 94 84.0
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.7e-37 159.1 94 85.1
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-37 157.9 94 83.0
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 3.8e-37 157.9 94 84.0
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.9e-37 157.5 94 84.0
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 1.4e-36 156.0 84 88.1
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 1.4e-36 156.0 94 84.0
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 4.2e-36 154.5 94 84.0
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 7.1e-36 153.7 74 100.0
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.1e-35 152.1 81 91.4
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.7e-35 151.8 81 91.4
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 6.0e-35 150.6 72 100.0
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 1.0e-34 149.8 82 84.1
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 2.3e-34 148.7 77 92.2
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 3.0e-34 148.3 79 88.6
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 3.9e-34 147.9 84 84.5
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 1.1e-33 146.4 94 76.6
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.6e-32 142.5 79 84.8
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 3.7e-32 141.4 69 98.6
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 3.7e-32 141.4 69 98.6
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 1.2e-30 136.3 94 76.6
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 3.4e-30 134.8 79 82.3
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 7.6e-30 133.7 72 88.9
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 9.9e-30 133.3 79 82.3
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.9e-29 131.7 82 80.5
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-28 129.8 74 83.8
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 3.2e-28 128.3 86 72.1
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.1e-27 125.6 94 69.1
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 3.5e-27 124.8 63 95.2
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.3e-26 122.9 63 93.7
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 3.9e-26 121.3 67 89.6
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 8.7e-26 120.2 66 89.4
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 1.9e-25 119.0 65 87.7
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 9.6e-25 116.7 75 78.7
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 9.6e-25 116.7 75 78.7
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 9.6e-25 116.7 75 78.7
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.6e-24 115.9 73 79.5
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.4e-23 112.8 61 88.5
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 2.6e-22 108.6 62 90.3
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 2.9e-21 105.1 75 68.0
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.9e-21 104.4 58 87.9
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.1e-20 103.2 53 92.5
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 4.2e-20 101.3 52 90.4
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 4.2e-20 101.3 62 82.3
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 5.5e-20 100.9 59 83.1
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 7.9e-19 97.1 50 90.0
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.0e-18 96.7 49 91.8
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 3.9e-18 94.7 46 95.7
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 1.1e-17 93.2 55 81.8
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 1.9e-17 92.4 44 97.7
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 1.3e-16 89.7 61 73.8
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 1.6e-16 89.4 55 81.8
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 3.7e-16 88.2 44 93.2
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.8e-15 85.9 46 84.8
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 1.8e-15 85.9 44 90.9
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 6.9e-15 84.0 41 95.1
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 6.9e-15 84.0 70 64.3
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 4.5e-14 81.3 43 88.4
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 2.9e-13 78.6 84 52.4
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 5.5e-12 74.3 41 85.4
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 1.2e-11 73.2 35 100.0
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.1e-11 72.4 37 89.2
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 1.0e-10 70.1 44 79.5
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.8e-10 69.3 37 89.2
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 1.5e-09 66.2 32 93.8
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.2e-08 62.4 30 93.3
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 8.2e-08 60.5 89 40.4


User provided reference genes

Program Settings