Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 4.4e-195 684.5 359 100.0
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 9.3e-177 623.6 363 92.8
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 3.3e-150 535.4 362 79.8
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 1.6e-144 516.5 359 77.2
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 2.1e-128 463.0 363 69.1
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 1.3e-125 453.8 380 66.8
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 1.8e-124 449.9 358 67.3
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 5.3e-124 448.4 382 65.4
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 2.0e-123 446.4 358 67.3
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 5.9e-123 444.9 366 65.6
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 5.9e-123 444.9 367 65.7
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 1.0e-122 444.1 362 67.1
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.3e-122 443.7 363 68.0
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.3e-122 443.7 357 66.4
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.3e-122 443.7 357 66.4
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.3e-122 443.7 363 66.4
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.7e-122 443.4 357 65.8
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.7e-122 443.4 360 66.1
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 3.8e-122 442.2 362 65.5
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 8.5e-122 441.0 357 65.8
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 8.5e-122 441.0 364 66.2
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 1.5e-121 440.3 364 66.8
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 2.5e-121 439.5 361 66.2
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 2.5e-121 439.5 364 64.3
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 3.2e-121 439.1 367 64.0
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 2.1e-120 436.4 363 65.8
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.7e-120 436.0 364 66.2
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 2.7e-120 436.0 364 66.2
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 4.7e-120 435.3 364 66.5
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 6.1e-120 434.9 353 66.6
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 1.4e-119 433.7 362 65.7
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 5.2e-119 431.8 360 65.0
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 6.7e-119 431.4 356 65.7
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 6.7e-119 431.4 362 64.9
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.5e-118 430.3 364 65.1
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 5.7e-118 428.3 360 64.2
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 7.5e-118 427.9 373 63.0
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 7.5e-118 427.9 365 63.8
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.8e-117 425.2 354 64.7
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 8.3e-117 424.5 362 63.0
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 1.1e-116 424.1 379 64.6
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.1e-116 424.1 354 64.4
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 1.1e-116 424.1 354 64.1
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 1.8e-116 423.3 362 62.7
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 7.0e-116 421.4 365 61.1
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 2.7e-115 419.5 356 64.6
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 4.5e-115 418.7 372 62.6
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 5.9e-115 418.3 365 65.2
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 7.7e-115 417.9 356 63.8
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 7.7e-115 417.9 396 60.4
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 1.7e-114 416.8 360 62.8
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.7e-114 416.8 367 62.7
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.8e-114 415.6 368 61.1
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 3.8e-114 415.6 368 62.8
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.1e-113 414.1 368 61.1
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 3.2e-113 412.5 357 62.7
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 4.2e-113 412.1 367 62.9
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 7.2e-113 411.4 364 63.5
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 2.1e-112 409.8 368 62.2
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 3.6e-112 409.1 353 62.3
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 3.6e-112 409.1 364 62.4
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 3.6e-112 409.1 355 62.5
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 6.1e-112 408.3 368 62.5
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.8e-111 406.8 354 63.8
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 5.7e-110 401.7 355 62.0
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 9.8e-110 401.0 369 62.1
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 4.8e-109 398.7 358 62.3
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 6.3e-109 398.3 379 61.2
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.4e-108 397.1 375 60.5
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 5.4e-108 395.2 375 60.5
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 5.4e-108 395.2 358 62.8
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 2.0e-107 393.3 337 64.4
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 2.9e-106 389.4 369 59.3
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 3.8e-106 389.0 369 62.1
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 8.6e-106 387.9 378 60.6
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.1e-105 387.5 432 53.7
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 1.9e-105 386.7 384 58.3
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.2e-104 384.0 365 59.2
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.2e-104 384.0 364 60.7
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 1.5e-102 377.1 357 58.5
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 5.7e-102 375.2 358 58.4
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 1.3e-101 374.0 365 58.4
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.8e-100 370.2 362 57.7
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 5.9e-99 365.2 383 54.8
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 1.5e-97 360.5 367 59.4
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 2.5e-97 359.8 428 50.7
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 3.3e-97 359.4 360 58.1
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 1.6e-96 357.1 378 54.2
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 1.6e-96 357.1 375 53.9
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 2.8e-96 356.3 393 52.7
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 3.1e-95 352.8 363 57.0
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 2.0e-94 350.1 345 55.7
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.4e-94 349.0 346 58.7
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 2.9e-93 346.3 363 55.6
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.1e-92 344.4 374 52.7
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.1e-92 344.4 374 52.7
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.9e-92 343.6 365 55.9
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 6.0e-91 338.6 359 53.8
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 6.0e-91 338.6 377 53.1
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 3.0e-90 336.3 378 53.2
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.9e-89 333.6 359 53.2
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 3.3e-89 332.8 372 55.4
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.6e-88 330.5 366 54.9
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.6e-88 330.5 366 54.9
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.4e-87 327.4 367 52.0
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 3.4e-86 322.8 357 52.4
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 3.2e-84 316.2 376 50.8
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 2.7e-83 313.2 375 49.3
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 2.7e-83 313.2 375 49.6
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 6.0e-83 312.0 372 50.0
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 1.3e-82 310.8 376 50.0
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 1.3e-82 310.8 376 50.0
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 3.3e-81 306.2 376 49.5
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 1.1e-71 274.6 344 52.0
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.9e-68 263.8 391 42.2
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.6e-64 250.8 358 46.1
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 3.1e-63 246.5 235 59.1
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 1.5e-62 244.2 238 59.2
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 6.4e-61 238.8 440 35.9
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 3.5e-59 233.0 360 40.3
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 5.1e-58 229.2 182 65.4
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 3.8e-53 213.0 297 47.1
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 9.3e-52 208.4 280 48.9
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 5.8e-46 189.1 356 36.0
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.3e-42 177.9 124 71.8
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 3.0e-42 176.8 225 47.1
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 6.9e-39 165.6 119 64.7
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.1e-36 158.3 161 57.8
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 6.7e-26 122.5 66 87.9
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 4.7e-19 99.8 420 24.5
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 3.3e-17 93.6 402 25.4
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.7e-16 91.3 117 47.9
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.8e-16 90.5 102 49.0
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 3.1e-15 87.0 53 77.4
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 4.5e-14 83.2 50 82.0
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 2.2e-13 80.9 265 29.8
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 2.9e-13 80.5 53 71.7
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 1.9e-12 77.8 60 65.0
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.9e-12 77.8 61 65.6
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 4.2e-12 76.6 61 65.6
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 8.0e-11 72.4 60 63.3
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 4.8e-08 63.2 418 26.6


User provided reference genes

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