Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0299651 Helianthus annuus HOM05D003243 ORTHO05D003717 5.5e-30 133.7 68 100.0
HanXRQChr04g0109741 Helianthus annuus HOM05D003243 ORTHO05D003717 9.1e-25 116.3 64 93.8
HanXRQChr04g0109711 Helianthus annuus HOM05D003243 ORTHO05D003717 2.2e-18 95.1 63 71.4
HanXRQChr04g0109731 Helianthus annuus HOM05D003243 ORTHO05D003717 1.2e-16 89.4 63 68.3
HanXRQChr04g0109701 Helianthus annuus HOM05D003243 ORTHO05D003717 4.0e-12 74.3 60 58.3
FAN20G2537 Fragaria x ananassa HOM05D003243 ORTHO05D003717 3.4e-11 71.2 67 50.7
FAN27G0949 Fragaria x ananassa HOM05D003243 ORTHO05D003717 3.4e-11 71.2 67 50.7
FAN15G3584 Fragaria x ananassa HOM05D003243 ORTHO05D003717 5.7e-11 70.5 66 51.5
FAN24G2686 Fragaria x ananassa HOM05D003243 ORTHO05D003717 5.7e-11 70.5 66 51.5
Lsat_1_v5_gn_1_9360 Lactuca sativa HOM05D003243 ORTHO05D003717 5.7e-11 70.5 58 56.9
RcHm_v2.0_Chr6g0277841 Rosa chinensis HOM05D003243 ORTHO05D003717 9.8e-11 69.7 65 50.8
DCAR_010277 Daucus carota HOM05D003243 ORTHO05D003717 2.2e-10 68.6 66 56.1
HanXRQChr08g0232401 Helianthus annuus HOM05D003243 ORTHO05D003717 4.8e-10 67.4 58 51.7
Rhsim11G0075000 Rhododendron simsii HOM05D003243 ORTHO05D003717 8.3e-10 66.6 56 55.4
Actinidia29502 Actinidia chinensis HOM05D003243 ORTHO05D003717 1.1e-09 66.2 68 50.0
Lj7A357T26 Lonicera japonica HOM05D003243 ORTHO05D003717 1.1e-09 66.2 53 56.6
COL.COLO4_35492 Corchorus olitorius HOM05D003243 ORTHO05D003717 1.8e-09 65.5 70 50.0
DCAR_001093 Daucus carota HOM05D003243 ORTHO05D003717 1.8e-09 65.5 57 52.6
THA.LOC104804863 Tarenaya hassleriana HOM05D003243 ORTHO05D003717 1.8e-09 65.5 63 49.2
THA.LOC104810056 Tarenaya hassleriana HOM05D003243 ORTHO05D003717 1.8e-09 65.5 63 49.2
Sabra05G0141900 Salix brachista HOM05D003243 ORTHO05D003717 2.4e-09 65.1 74 50.0
BcaNung04680 Brassica carinata HOM05D003243 ORTHO05D003717 3.1e-09 64.7 60 50.0
unitig_0.g2110 Utricularia gibba HOM05D003243 ORTHO05D003717 3.1e-09 64.7 45 55.6
GSVIVG01009981001 Vitis vinifera HOM05D003243 ORTHO05D003717 3.1e-09 64.7 54 51.9
Hma1.2p1_0642F.1_g194370 Hydrangea macrophylla HOM05D003243 ORTHO05D003717 4.1e-09 64.3 46 60.9
Hund04717 Selenicereus undatus HOM05D003243 ORTHO05D003717 4.1e-09 64.3 66 45.5
Dinv41147 Davidia involucrata HOM05D003243 ORTHO05D003717 5.4e-09 63.9 56 55.4
Actinidia15183 Actinidia chinensis HOM05D003243 ORTHO05D003717 7.0e-09 63.5 46 58.7
Actinidia25629 Actinidia chinensis HOM05D003243 ORTHO05D003717 7.0e-09 63.5 46 58.7
Thhalv10018746m.g Eutrema salsugineum HOM05D003243 ORTHO05D003717 7.0e-09 63.5 60 50.0
Manes.02G172600 Manihot esculenta HOM05D003243 ORTHO05D003717 7.0e-09 63.5 52 53.8
Aa31LG4G7070 Aethionema arabicum HOM05D003243 ORTHO05D003717 9.1e-09 63.2 61 49.2
Lsat_1_v5_gn_6_97240 Lactuca sativa HOM05D003243 ORTHO05D003717 9.1e-09 63.2 53 52.8
Potri.005G185700 Populus trichocarpa HOM05D003243 ORTHO05D003717 9.1e-09 63.2 52 53.8
PGSC0003DMG400024857 Solanum tuberosum HOM05D003243 ORTHO05D003717 9.1e-09 63.2 54 53.7
Thecc.08G138500 Theobroma cacao HOM05D003243 ORTHO05D003717 9.1e-09 63.2 52 53.8
Atru.chr13.1648 Acer truncatum HOM05D003243 ORTHO05D003717 1.2e-08 62.8 59 50.8
A07p28110 Brassica napus HOM05D003243 ORTHO05D003717 1.2e-08 62.8 52 55.8
C06p31540 Brassica napus HOM05D003243 ORTHO05D003717 1.2e-08 62.8 52 55.8
BolC6t38282H Brassica oleracea HOM05D003243 ORTHO05D003717 1.2e-08 62.8 52 55.8
Haze_17675 Corylus avellana HOM05D003243 ORTHO05D003717 1.2e-08 62.8 70 47.1
HanXRQChr05g0160471 Helianthus annuus HOM05D003243 ORTHO05D003717 1.2e-08 62.8 53 54.7
Carub.0002s2392 Capsella rubella HOM05D003243 ORTHO05D003717 1.6e-08 62.4 52 53.8
Ca_12653_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 1.6e-08 62.4 59 49.2
Ca_12670_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 1.6e-08 62.4 59 49.2
Duzib116G0834 Durio zibethinus HOM05D003243 ORTHO05D003717 1.6e-08 62.4 52 53.8
Gohir.A02G109500 Gossypium hirsutum HOM05D003243 ORTHO05D003717 1.6e-08 62.4 69 49.3
Potri.002G074700 Populus trichocarpa HOM05D003243 ORTHO05D003717 1.6e-08 62.4 64 46.9
Sabra02G0058200 Salix brachista HOM05D003243 ORTHO05D003717 1.6e-08 62.4 74 48.6
CAN.G46.5 Capsicum annuum HOM05D003243 ORTHO05D003717 2.0e-08 62.0 68 51.5
Gohir.A05G240800 Gossypium hirsutum HOM05D003243 ORTHO05D003717 2.0e-08 62.0 52 51.9
Gohir.D03G062300 Gossypium hirsutum HOM05D003243 ORTHO05D003717 2.0e-08 62.0 61 49.2
Gorai.013G107300 Gossypium raimondii HOM05D003243 ORTHO05D003717 2.0e-08 62.0 61 49.2
MBI06_g27445_MAGBIO Magnolia biondii HOM05D003243 ORTHO05D003717 2.0e-08 62.0 56 50.0
Manes.18G085100 Manihot esculenta HOM05D003243 ORTHO05D003717 2.0e-08 62.0 52 51.9
BcaC08g47203 Brassica carinata HOM05D003243 ORTHO05D003717 2.7e-08 61.6 52 51.9
C06p51220 Brassica napus HOM05D003243 ORTHO05D003717 2.7e-08 61.6 52 51.9
BolC6t40144H Brassica oleracea HOM05D003243 ORTHO05D003717 2.7e-08 61.6 52 51.9
BraA07t30455Z Brassica rapa HOM05D003243 ORTHO05D003717 2.7e-08 61.6 52 55.8
CARHR070540 Cardamine hirsuta HOM05D003243 ORTHO05D003717 2.7e-08 61.6 46 58.7
Cfa018393 Carpinus fangiana HOM05D003243 ORTHO05D003717 2.7e-08 61.6 70 45.7
Nitab4.5_0000174g0050 Nicotiana tabacum HOM05D003243 ORTHO05D003717 2.7e-08 61.6 49 57.1
Oeu045988.1 Olea europaea HOM05D003243 ORTHO05D003717 2.7e-08 61.6 59 49.2
THA.LOC104812061 Tarenaya hassleriana HOM05D003243 ORTHO05D003717 2.7e-08 61.6 63 49.2
Dinv25778 Davidia involucrata HOM05D003243 ORTHO05D003717 3.5e-08 61.2 60 51.7
Gohir.D05G242000 Gossypium hirsutum HOM05D003243 ORTHO05D003717 3.5e-08 61.2 52 51.9
Sed0017540 Sechium edule HOM05D003243 ORTHO05D003717 3.5e-08 61.2 45 57.8
Hund26760 Selenicereus undatus HOM05D003243 ORTHO05D003717 3.5e-08 61.2 67 43.3
Aa31LG7G5480 Aethionema arabicum HOM05D003243 ORTHO05D003717 4.5e-08 60.8 63 47.6
Aqoxy6G00333 Aquilegia oxysepala HOM05D003243 ORTHO05D003717 4.5e-08 60.8 53 47.2
Peaxi162Scf00066g01516 Petunia axillaris HOM05D003243 ORTHO05D003717 4.5e-08 60.8 56 51.8
Phvul.001G065400 Phaseolus vulgaris HOM05D003243 ORTHO05D003717 4.5e-08 60.8 70 44.3
Sp5g32170 Schrenkiella parvula HOM05D003243 ORTHO05D003717 4.5e-08 60.8 60 48.3
CiPaw.16G019300 Carya illinoinensis HOM05D003243 ORTHO05D003717 5.9e-08 60.5 70 44.3
Duzib041G0121 Durio zibethinus HOM05D003243 ORTHO05D003717 5.9e-08 60.5 52 51.9
Cpa.g.sc26.74 Carica papaya HOM05D003243 ORTHO05D003717 7.7e-08 60.1 63 46.0
Nn1g06283 Nelumbo nucifera HOM05D003243 ORTHO05D003717 7.7e-08 60.1 66 43.9
Nitab4.5_0003622g0030 Nicotiana tabacum HOM05D003243 ORTHO05D003717 7.7e-08 60.1 49 55.1
TPR.G33350 Trifolium pratense HOM05D003243 ORTHO05D003717 7.7e-08 60.1 57 50.9
TWI34G0021 Tripterygium wilfordii HOM05D003243 ORTHO05D003717 7.7e-08 60.1 52 50.0
A07p42630 Brassica napus HOM05D003243 ORTHO05D003717 1.0e-07 59.7 52 50.0
BraA07t31785Z Brassica rapa HOM05D003243 ORTHO05D003717 1.0e-07 59.7 52 50.0
CSS0014299 Camellia sinensis var. sinensis HOM05D003243 ORTHO05D003717 1.0e-07 59.7 63 52.4
ClCG08G006300 Citrullus lanatus HOM05D003243 ORTHO05D003717 1.0e-07 59.7 45 57.8
Ciclev10001527m.g Citrus clementina HOM05D003243 ORTHO05D003717 1.0e-07 59.7 66 45.5
MELO3C008429.2 Cucumis melo HOM05D003243 ORTHO05D003717 1.0e-07 59.7 45 57.8
CsaV3_6G031140 Cucumis sativus L. HOM05D003243 ORTHO05D003717 1.0e-07 59.7 45 55.6
Thhalv10008012m.g Eutrema salsugineum HOM05D003243 ORTHO05D003717 1.0e-07 59.7 47 55.3
PSO170G2982 Papaver somniferum HOM05D003243 ORTHO05D003717 1.0e-07 59.7 54 42.6
PSO528G0160 Papaver somniferum HOM05D003243 ORTHO05D003717 1.0e-07 59.7 54 42.6
Sp1g18960 Schrenkiella parvula HOM05D003243 ORTHO05D003717 1.0e-07 59.7 59 50.8
BcaC01g01597 Brassica carinata HOM05D003243 ORTHO05D003717 1.3e-07 59.3 48 52.1
Gorai.009G251400 Gossypium raimondii HOM05D003243 ORTHO05D003717 1.3e-07 59.3 52 50.0
Oeu037952.1 Olea europaea HOM05D003243 ORTHO05D003717 1.3e-07 59.3 59 49.2
TAR628G1621 Trochodendron aralioides HOM05D003243 ORTHO05D003717 1.3e-07 59.3 53 49.1
AT1G77000 Arabidopsis thaliana HOM05D003243 ORTHO05D003717 1.7e-07 58.9 46 56.5
Lalb_Chr11g0066321 Lupinus albus HOM05D003243 ORTHO05D003717 1.7e-07 58.9 69 46.4
Oeu001554.1 Olea europaea HOM05D003243 ORTHO05D003717 1.7e-07 58.9 54 51.9
Solyc04g063380.3 Solanum lycopersicum HOM05D003243 ORTHO05D003717 1.7e-07 58.9 56 50.0
Sopen04g026300 Solanum pennellii HOM05D003243 ORTHO05D003717 1.7e-07 58.9 56 51.8
AT1G21410 Arabidopsis thaliana HOM05D003243 ORTHO05D003717 2.3e-07 58.5 47 53.2
BcaB03g12816 Brassica carinata HOM05D003243 ORTHO05D003717 2.3e-07 58.5 58 50.0
AUR62013463 Chenopodium quinoa HOM05D003243 ORTHO05D003717 2.3e-07 58.5 46 52.2
Duzib093G1881 Durio zibethinus HOM05D003243 ORTHO05D003717 2.3e-07 58.5 46 56.5
Glyma.14G118200 Glycine max HOM05D003243 ORTHO05D003717 2.3e-07 58.5 70 47.1
SalBow6G3961 Salvia bowleyana HOM05D003243 ORTHO05D003717 2.3e-07 58.5 60 41.7
Glyma.06G120600 Glycine max HOM05D003243 ORTHO05D003717 2.9e-07 58.2 46 54.3
Lalb_Chr08g0240891 Lupinus albus HOM05D003243 ORTHO05D003717 2.9e-07 58.2 56 50.0
Nn5g28514 Nelumbo nucifera HOM05D003243 ORTHO05D003717 2.9e-07 58.2 53 45.3
Carub.0001s2083 Capsella rubella HOM05D003243 ORTHO05D003717 3.8e-07 57.8 47 53.2
Glyma.11G178504 Glycine max HOM05D003243 ORTHO05D003717 3.8e-07 57.8 46 52.2
Glyma.13G036600 Glycine max HOM05D003243 ORTHO05D003717 3.8e-07 57.8 46 52.2
Gohir.A02G068700 Gossypium hirsutum HOM05D003243 ORTHO05D003717 3.8e-07 57.8 68 45.6
Gorai.005G084600 Gossypium raimondii HOM05D003243 ORTHO05D003717 3.8e-07 57.8 68 45.6
Ah.05g169240 Amaranthus hybridus HOM05D003243 ORTHO05D003717 5.0e-07 57.4 56 46.4
arahy.Tifrunner.gnm1.ann1.H9I2X3 Arachis hypogaea HOM05D003243 ORTHO05D003717 5.0e-07 57.4 58 48.3
CANSAT21G2438 Cannabis sativa HOM05D003243 ORTHO05D003717 5.0e-07 57.4 70 45.7
Gohir.D02G075200 Gossypium hirsutum HOM05D003243 ORTHO05D003717 5.0e-07 57.4 68 44.1
PGR042G1914 Punica granatum HOM05D003243 ORTHO05D003717 5.0e-07 57.4 63 44.4
Sed0024660 Sechium edule HOM05D003243 ORTHO05D003717 5.0e-07 57.4 45 53.3
Sc15g0007480 Simmondsia chinensis HOM05D003243 ORTHO05D003717 5.0e-07 57.4 56 48.2
MSTRG.25343 Avicennia marina HOM05D003243 ORTHO05D003717 6.6e-07 57.0 54 51.9
Prupe.8G012800 Prunus persica HOM05D003243 ORTHO05D003717 6.6e-07 57.0 52 44.2
VMungo1309G2691 Vigna mungo HOM05D003243 ORTHO05D003717 6.6e-07 57.0 46 54.3
BcaC07g39100 Brassica carinata HOM05D003243 ORTHO05D003717 8.6e-07 56.6 58 48.3
A08p28960 Brassica napus HOM05D003243 ORTHO05D003717 8.6e-07 56.6 58 48.3
BolC8t49722H Brassica oleracea HOM05D003243 ORTHO05D003717 8.6e-07 56.6 58 48.3
BraA08t34829Z Brassica rapa HOM05D003243 ORTHO05D003717 8.6e-07 56.6 58 48.3
Ca_23406_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 8.6e-07 56.6 57 50.9
Hma1.2p1_0107F.1_g051260 Hydrangea macrophylla HOM05D003243 ORTHO05D003717 8.6e-07 56.6 54 48.1
Phvul.009G133200 Phaseolus vulgaris HOM05D003243 ORTHO05D003717 8.6e-07 56.6 70 41.4
ECA246G0520 Erigeron canadensis HOM05D003243 ORTHO05D003717 1.1e-06 56.2 54 50.0
Glyma.04G242700 Glycine max HOM05D003243 ORTHO05D003717 1.1e-06 56.2 61 49.2
MD05G1010400 Malus domestica HOM05D003243 ORTHO05D003717 1.1e-06 56.2 46 47.8
Hund17376 Selenicereus undatus HOM05D003243 ORTHO05D003717 1.1e-06 56.2 62 41.9
TPR.G25621 Trifolium pratense HOM05D003243 ORTHO05D003717 1.1e-06 56.2 57 49.1
AL1G34520 Arabidopsis lyrata HOM05D003243 ORTHO05D003717 1.5e-06 55.8 47 51.1
Ca_16639_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 1.5e-06 55.8 57 50.9
unitig_82.g27082 Utricularia gibba HOM05D003243 ORTHO05D003717 1.5e-06 55.8 57 49.1
EL10Ac1g01412 Beta vulgaris HOM05D003243 ORTHO05D003717 1.9e-06 55.5 57 45.6
C08p20820 Brassica napus HOM05D003243 ORTHO05D003717 1.9e-06 55.5 58 46.6
CARHR021800 Cardamine hirsuta HOM05D003243 ORTHO05D003717 1.9e-06 55.5 47 48.9
Pp3c12_1700 Physcomitrium patens HOM05D003243 ORTHO05D003717 1.9e-06 55.5 49 44.9
SGA_v2.0_scaffold19G08690 Striga asiatica HOM05D003243 ORTHO05D003717 1.9e-06 55.5 46 50.0
SGA_v2.0_scaffold48G17925 Striga asiatica HOM05D003243 ORTHO05D003717 1.9e-06 55.5 75 41.3
AUR62007671 Chenopodium quinoa HOM05D003243 ORTHO05D003717 2.5e-06 55.1 46 47.8
Medtr3g088895 Medicago truncatula HOM05D003243 ORTHO05D003717 2.5e-06 55.1 64 45.3
SalBow7G2939 Salvia bowleyana HOM05D003243 ORTHO05D003717 3.3e-06 54.7 46 50.0
CiPaw.15G024000 Carya illinoinensis HOM05D003243 ORTHO05D003717 4.2e-06 54.3 52 48.1
ATR0584G015 Amborella trichopoda HOM05D003243 ORTHO05D003717 5.5e-06 53.9 62 37.1
MSTRG.1390 Avicennia marina HOM05D003243 ORTHO05D003717 5.5e-06 53.9 54 46.3
Lj1g0023277 Lotus japonicus HOM05D003243 ORTHO05D003717 5.5e-06 53.9 59 45.8
Medtr1g029500 Medicago truncatula HOM05D003243 ORTHO05D003717 5.5e-06 53.9 47 51.1
Psat5g082440 Pisum sativum HOM05D003243 ORTHO05D003717 5.5e-06 53.9 64 45.3
Psat6g039800 Pisum sativum HOM05D003243 ORTHO05D003717 5.5e-06 53.9 47 51.1
SEGI_09933 Sequoiadendron giganteum HOM05D003243 ORTHO05D003717 5.5e-06 53.9 46 45.7


User provided reference genes

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