Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 1.5e-158 562.8 280 100.0
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 5.8e-126 454.5 243 91.8
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.9e-117 425.6 243 86.4
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 4.6e-115 418.3 239 87.4
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 1.0e-114 417.2 245 80.8
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 8.7e-114 414.1 245 81.2
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.5e-113 413.3 243 81.9
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 1.9e-113 412.9 243 81.1
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.5e-113 412.5 217 92.6
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 1.6e-112 409.8 242 80.6
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 8.1e-112 407.5 243 79.4
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.8e-111 406.4 243 79.4
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 3.1e-111 405.6 243 78.2
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 5.3e-111 404.8 243 79.4
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 9.0e-111 404.1 243 79.0
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.5e-110 403.3 243 79.0
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.5e-110 403.3 243 79.0
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.5e-110 403.3 245 78.0
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 2.0e-110 402.9 243 78.2
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.6e-110 402.5 243 78.6
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.6e-110 402.5 262 74.0
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 7.6e-110 401.0 243 78.2
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 7.6e-110 401.0 243 79.8
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.3e-109 400.2 236 80.9
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.7e-109 399.8 243 78.6
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 4.9e-109 398.3 252 76.2
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.1e-108 397.1 248 75.0
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.4e-108 396.7 245 75.5
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.5e-108 396.0 243 78.2
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.2e-108 395.2 243 77.8
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 7.1e-108 394.4 243 78.2
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 7.1e-108 394.4 243 76.5
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 7.1e-108 394.4 243 76.1
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 9.3e-108 394.0 243 77.4
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.2e-107 393.7 236 79.2
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 2.7e-107 392.5 245 75.5
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.5e-107 392.1 248 77.0
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 4.6e-107 391.7 236 77.5
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 4.6e-107 391.7 238 78.2
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 4.6e-107 391.7 241 77.2
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.0e-107 391.3 239 77.4
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.0e-107 391.3 239 77.4
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 7.9e-107 391.0 243 74.5
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.3e-106 390.2 245 75.9
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.3e-106 389.4 245 75.9
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 2.3e-106 389.4 243 77.4
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 3.9e-106 388.7 243 76.1
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 3.9e-106 388.7 235 78.7
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 8.7e-106 387.5 251 74.1
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 8.7e-106 387.5 243 74.9
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 1.1e-105 387.1 248 75.4
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 1.9e-105 386.3 234 78.6
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 2.5e-105 386.0 251 73.3
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.7e-105 384.8 243 77.4
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 7.4e-105 384.4 245 75.1
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 9.6e-105 384.0 245 75.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.3e-104 383.6 243 74.9
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.6e-104 383.3 243 75.3
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 2.8e-104 382.5 243 75.7
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 3.7e-104 382.1 249 71.9
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 4.8e-104 381.7 236 77.1
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.2e-104 381.3 239 75.7
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.4e-103 380.2 243 75.3
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.4e-103 380.2 251 72.5
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.4e-103 380.2 243 74.1
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 1.8e-103 379.8 243 73.3
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 1.8e-103 379.8 243 75.3
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.4e-103 379.4 243 72.4
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.4e-103 379.4 240 76.2
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 4.0e-103 378.6 243 74.5
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 5.3e-103 378.3 253 73.1
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.2e-102 377.1 243 73.7
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.2e-102 377.1 249 72.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.0e-102 376.3 243 72.8
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 4.5e-102 375.2 217 82.0
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 5.8e-102 374.8 235 75.7
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 1.0e-101 374.0 241 73.0
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 1.3e-101 373.6 268 69.0
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.7e-101 373.2 249 72.3
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 2.2e-101 372.9 243 72.8
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 2.2e-101 372.9 243 74.1
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 2.9e-101 372.5 241 73.0
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.9e-101 372.5 243 72.8
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 4.9e-101 371.7 243 71.6
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 4.9e-101 371.7 233 74.7
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 6.5e-101 371.3 243 70.8
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 6.5e-101 371.3 243 72.4
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 8.4e-101 370.9 234 75.6
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.9e-100 369.8 243 71.6
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 3.2e-100 369.0 236 73.7
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 3.2e-100 369.0 236 73.7
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 3.2e-100 369.0 243 70.0
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 7.1e-100 367.9 243 71.2
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 9.3e-100 367.5 234 74.4
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 9.3e-100 367.5 243 72.4
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 9.3e-100 367.5 251 71.7
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.1e-99 366.3 214 79.9
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 2.7e-99 365.9 235 73.2
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 2.7e-99 365.9 235 73.2
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 7.9e-99 364.4 236 72.9
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.3e-98 363.6 236 72.0
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 1.3e-98 363.6 236 72.0
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 3.9e-98 362.1 243 70.4
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 3.9e-98 362.1 243 72.0
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 5.1e-98 361.7 243 70.4
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 6.7e-98 361.3 243 70.0
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 6.7e-98 361.3 269 65.1
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 8.7e-98 360.9 242 71.1
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 1.5e-97 360.1 244 69.7
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.3e-97 359.0 241 71.8
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 4.3e-97 358.6 234 71.8
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 4.3e-97 358.6 243 70.0
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.7e-97 358.2 215 78.1
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 7.4e-97 357.8 238 71.4
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.1e-95 354.0 243 69.1
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.4e-95 352.8 245 71.4
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 2.4e-95 352.8 323 56.7
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 2.4e-95 352.8 215 78.1
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.0e-93 347.4 222 74.3
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 1.0e-93 347.4 232 70.3
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.7e-93 346.7 208 78.4
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.7e-93 346.7 243 68.3
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.0e-93 345.1 208 77.9
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 2.5e-92 342.8 217 75.1
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 5.5e-92 341.7 219 74.9
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 5.5e-92 341.7 219 75.3
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 9.7e-89 330.9 217 71.9
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.5e-86 323.6 212 72.6
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.5e-86 322.0 199 75.4
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 6.7e-82 308.1 244 62.3
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 3.3e-81 305.8 265 61.1
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.2e-80 303.1 246 61.0
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 8.8e-74 281.2 240 58.8
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.5e-68 263.1 256 55.1
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 2.0e-62 243.4 245 53.5
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 8.0e-59 231.5 246 50.0
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 1.7e-48 197.2 114 80.7
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.4e-47 192.2 203 54.2
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 2.9e-45 186.4 199 53.8
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 2.8e-43 179.9 124 70.2
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 4.0e-42 176.0 124 65.3
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.7e-37 160.6 220 42.7
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 4.3e-36 156.0 158 51.3
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.4e-34 151.0 99 71.7
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 2.1e-30 137.1 88 71.6
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.8e-30 135.2 80 77.5
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.5e-28 131.0 77 83.1
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 8.9e-26 121.7 76 72.4
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 1.2e-22 111.3 72 70.8
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 6.6e-21 105.5 61 77.0
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.5e-20 104.4 98 54.1
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 4.4e-17 92.8 53 77.4
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 7.6e-17 92.0 70 61.4
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 2.7e-14 83.6 51 74.5
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.7e-14 83.6 51 74.5
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 3.0e-13 80.1 61 59.0
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.9e-12 77.4 162 35.8
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 2.8e-11 73.6 50 62.0
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 3.1e-10 70.1 51 60.8
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 9.0e-10 68.6 56 58.9
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 9.0e-10 68.6 64 50.0
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.2e-09 68.2 109 41.3
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.4e-07 61.2 157 31.2


User provided reference genes

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