Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr02g0041471 Helianthus annuus HOM05D005573 ORTHO05D007161 1.0e-108 396.7 202 100.0
HanXRQChr02g0044961 Helianthus annuus HOM05D005573 ORTHO05D007161 1.0e-108 396.7 202 100.0
HanXRQChr07g0201021 Helianthus annuus HOM05D005573 ORTHO05D007161 1.0e-108 396.7 202 100.0
HanXRQChr08g0210291 Helianthus annuus HOM05D005573 ORTHO05D007161 1.0e-108 396.7 202 100.0
HanXRQChr10g0289201 Helianthus annuus HOM05D005573 ORTHO05D007161 1.0e-108 396.7 202 100.0
HanXRQChr11g0326731 Helianthus annuus HOM05D005573 ORTHO05D007161 1.0e-108 396.7 202 100.0
HanXRQCPg0579941 Helianthus annuus HOM05D005573 ORTHO05D007161 1.0e-108 396.7 202 100.0
Lsat_1_v5_gn_3_99201 Lactuca sativa HOM05D005573 ORTHO05D007161 7.4e-107 390.6 202 98.5
Hma1.2p1_0248F.1_g102160 Hydrangea macrophylla HOM05D005573 ORTHO05D007161 7.2e-102 374.0 202 95.0
DCAR_032486 Daucus carota HOM05D005573 ORTHO05D007161 2.7e-101 372.1 202 94.1
CAN.G551.66 Capsicum annuum HOM05D005573 ORTHO05D007161 1.4e-100 369.8 202 93.6
CAN.G65.126 Capsicum annuum HOM05D005573 ORTHO05D007161 1.4e-100 369.8 202 93.6
PGR111G0074 Punica granatum HOM05D005573 ORTHO05D007161 2.3e-100 369.0 202 93.1
Migut.D01426 Erythranthe guttata HOM05D005573 ORTHO05D007161 3.0e-100 368.6 202 92.6
CAN.G1183.7 Capsicum annuum HOM05D005573 ORTHO05D007161 9.7e-99 363.6 202 92.1
Nn1g10181 Nelumbo nucifera HOM05D005573 ORTHO05D007161 2.8e-98 362.1 202 92.1
Nn1g10183 Nelumbo nucifera HOM05D005573 ORTHO05D007161 2.8e-98 362.1 202 92.1
SalBow1G4134 Salvia bowleyana HOM05D005573 ORTHO05D007161 3.7e-98 361.7 202 91.1
arahy.Tifrunner.gnm1.ann1.DMW7HF Arachis hypogaea HOM05D005573 ORTHO05D007161 4.8e-98 361.3 202 89.6
Sed0002328 Sechium edule HOM05D005573 ORTHO05D007161 4.8e-98 361.3 202 90.6
Sed0008322 Sechium edule HOM05D005573 ORTHO05D007161 4.8e-98 361.3 202 90.6
EL10As27g24246 Beta vulgaris HOM05D000216 ORTHO05D007161 3.1e-97 358.6 202 91.1
PSO548G0019 Papaver somniferum HOM05D005573 ORTHO05D007161 4.1e-97 358.2 202 91.6
LjContig00318g0014176 Lotus japonicus HOM05D005573 ORTHO05D007161 3.5e-96 355.1 202 89.1
Medtr4g051220 Medicago truncatula HOM05D005573 ORTHO05D007161 3.5e-96 355.1 202 89.6
CARHR282030 Cardamine hirsuta HOM05D005573 ORTHO05D007161 4.5e-96 354.8 202 90.6
A06p23260 Brassica napus HOM05D005573 ORTHO05D007161 5.9e-96 354.4 202 90.6
BNapus_Darmor_BZH_scaffold_287p00070 Brassica napus HOM05D005573 ORTHO05D007161 5.9e-96 354.4 202 90.6
BolSC45t60866H Brassica oleracea HOM05D005573 ORTHO05D007161 5.9e-96 354.4 202 90.6
BolSC45t60946H Brassica oleracea HOM05D005573 ORTHO05D007161 5.9e-96 354.4 202 90.6
BolSC46t60993H Brassica oleracea HOM05D005573 ORTHO05D007161 5.9e-96 354.4 202 90.6
BolSC46t61042H Brassica oleracea HOM05D005573 ORTHO05D007161 5.9e-96 354.4 202 90.6
BraA06t25428Z Brassica rapa HOM05D005573 ORTHO05D007161 5.9e-96 354.4 202 90.6
BraSC140t45578Z Brassica rapa HOM05D005573 ORTHO05D007161 5.9e-96 354.4 202 90.6
BraSC151t45711Z Brassica rapa HOM05D005573 ORTHO05D007161 5.9e-96 354.4 202 90.6
AL2G20730 Arabidopsis lyrata HOM05D005573 ORTHO05D007161 5.0e-95 351.3 202 90.1
Gohir.A08G157500 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.5e-94 349.7 202 90.1
ATCG00380 Arabidopsis thaliana HOM05D005573 ORTHO05D007161 1.9e-94 349.4 202 89.6
AL2G21420 Arabidopsis lyrata HOM05D005573 ORTHO05D007161 2.5e-94 349.0 202 89.6
Lj2P1237T91 Lonicera japonica HOM05D005573 ORTHO05D007161 8.0e-93 344.0 204 89.7
Lj2P1239T179 Lonicera japonica HOM05D005573 ORTHO05D007161 8.0e-93 344.0 204 89.7
BolSC49t61189H Brassica oleracea HOM05D005573 ORTHO05D007161 2.6e-91 339.0 204 88.2
Lj4g0013543 Lotus japonicus HOM05D005573 ORTHO05D007161 1.0e-87 327.0 202 84.2
Oeu012806.1 Olea europaea HOM05D005573 ORTHO05D007161 6.5e-87 324.3 199 83.4
EL10As12g24021 Beta vulgaris HOM05D005573 ORTHO05D007161 3.6e-85 318.5 200 81.5
Zm00001eb039080 Zea mays HOM05D005573 ORTHO05D007161 1.4e-84 316.6 202 78.7
Zm00001eb039210 Zea mays HOM05D005573 ORTHO05D007161 1.4e-84 316.6 202 78.7
Zm00001eb435020 Zea mays HOM05D005573 ORTHO05D007161 1.4e-84 316.6 202 78.7
Zm00001eb435220 Zea mays HOM05D005573 ORTHO05D007161 1.4e-84 316.6 202 78.7
Zm00001eb435420 Zea mays HOM05D005573 ORTHO05D007161 1.4e-84 316.6 202 78.7
Zm00001eb435680 Zea mays HOM05D005573 ORTHO05D007161 1.4e-84 316.6 202 78.7
Zm00001eb440990 Zea mays HOM05D005573 ORTHO05D007161 1.4e-84 316.6 202 78.7
Gohir.D04G083800 Gossypium hirsutum HOM05D005573 ORTHO05D007161 6.8e-84 314.3 202 83.2
PGSC0003DMG400024039 Solanum tuberosum HOM05D005573 ORTHO05D007161 1.7e-82 309.7 182 89.0
Glyma.01G153400 Glycine max HOM05D005573 ORTHO05D007161 3.1e-81 305.4 185 82.7
Gorai.006G201300 Gossypium raimondii HOM05D005573 ORTHO05D007161 6.8e-76 287.7 182 84.1
Gohir.D09G179300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 3.4e-75 285.4 182 83.5
Medtr0002s0590 Medicago truncatula HOM05D005573 ORTHO05D007161 1.4e-73 280.0 182 76.4
C09p29560 Brassica napus HOM05D005573 ORTHO05D007161 7.0e-73 277.7 157 91.1
Thhalv10010766m.g Eutrema salsugineum HOM05D005573 ORTHO05D007161 1.6e-69 266.5 202 73.3
Zm00001eb039100 Zea mays HOM05D005573 ORTHO05D007161 4.7e-69 265.0 172 77.3
Zm00001eb231240 Zea mays HOM05D005573 ORTHO05D007161 7.5e-67 257.7 177 74.0
Lalb_Chr07g0191491 Lupinus albus HOM05D005573 ORTHO05D007161 1.2e-64 250.4 151 85.4
Nitab4.5_0006596g0030 Nicotiana tabacum HOM05D005573 ORTHO05D007161 2.0e-64 249.6 151 86.8
Solyc09g015330.2 Solanum lycopersicum HOM05D005573 ORTHO05D007161 2.0e-64 249.6 156 85.3
SEGI_18745 Sequoiadendron giganteum HOM05D005573 ORTHO05D007161 3.0e-63 245.7 208 64.4
Gohir.A09G103300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.2e-61 240.4 163 80.4
TWI60G0396 Tripterygium wilfordii HOM05D005573 ORTHO05D007161 2.1e-61 239.6 138 87.0
HanXRQChr13g0413641 Helianthus annuus HOM05D005573 ORTHO05D007161 4.4e-59 231.9 114 100.0
HanXRQChr13g0413711 Helianthus annuus HOM05D005573 ORTHO05D007161 4.4e-59 231.9 114 100.0
HanXRQChr13g0413781 Helianthus annuus HOM05D005573 ORTHO05D007161 4.4e-59 231.9 114 100.0
HanXRQChr13g0413861 Helianthus annuus HOM05D005573 ORTHO05D007161 4.4e-59 231.9 114 100.0
HanXRQChr13g0413931 Helianthus annuus HOM05D005573 ORTHO05D007161 4.4e-59 231.9 114 100.0
GSVIVG01021975001 Vitis vinifera HOM05D005573 ORTHO05D007161 1.1e-57 227.3 132 89.4
Nn2g13212 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.4e-52 210.3 114 92.1
Nn423s46610 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.4e-52 210.3 114 92.1
arahy.Tifrunner.gnm1.ann1.NT5R3P Arachis hypogaea HOM05D005573 ORTHO05D007161 1.5e-51 206.8 149 73.2
Nn6g33243 Nelumbo nucifera HOM05D005573 ORTHO05D007161 5.8e-51 204.9 114 89.5
Eucgr.B02956 Eucalyptus grandis HOM05D005573 ORTHO05D007161 4.9e-50 201.8 114 86.0
CDE08G0454 Ceratophyllum demersum HOM05D000219 ORTHO05D000226 8.3e-50 201.1 114 87.7
Gohir.A10G100366 Gossypium hirsutum HOM05D005573 ORTHO05D007161 1.3e-47 193.7 114 85.1
Oeu062838.1 Olea europaea HOM05D005573 ORTHO05D007161 1.3e-47 193.7 129 81.4
CAN.G1478.12 Capsicum annuum HOM05D005573 ORTHO05D007161 8.6e-47 191.0 103 91.3
Gohir.A07G163636 Gossypium hirsutum HOM05D005573 ORTHO05D007161 9.6e-46 187.6 114 83.3
ClCG00G003940 Citrullus lanatus HOM05D005573 ORTHO05D007161 1.6e-45 186.8 101 95.0
Potri.013G163300 Populus trichocarpa HOM05D005573 ORTHO05D007161 3.6e-45 185.7 103 87.4
Zm00001eb438350 Zea mays HOM05D005573 ORTHO05D007161 1.8e-44 183.3 114 77.2
CAN.G129.6 Capsicum annuum HOM05D005573 ORTHO05D007161 8.9e-44 181.0 103 86.4
CAN.G100.47 Capsicum annuum HOM05D005573 ORTHO05D007161 1.7e-42 176.8 103 84.5
Solyc09g015310.3 Solanum lycopersicum HOM05D005573 ORTHO05D007161 4.9e-42 175.3 102 83.3
Lalb_Chr15g0080691 Lupinus albus HOM05D005573 ORTHO05D007161 1.1e-41 174.1 103 80.6
BraSC25t45875Z Brassica rapa HOM05D005573 ORTHO05D007161 1.2e-40 170.6 103 82.5
Phvul.011G056580 Phaseolus vulgaris HOM05D005573 ORTHO05D007161 1.3e-39 167.2 101 84.2
Nn5g30925 Nelumbo nucifera HOM05D005573 ORTHO05D007161 2.3e-39 166.4 90 91.1
Phvul.008G150500 Phaseolus vulgaris HOM05D005573 ORTHO05D007161 5.6e-38 161.8 94 78.7
Migut.D01353 Erythranthe guttata HOM05D005573 ORTHO05D007161 8.1e-37 157.9 141 63.1
SMO086G0035 Selaginella moellendorffii HOM05D005573 ORTHO05D007161 5.8e-35 151.8 190 50.0
SMO086G0038 Selaginella moellendorffii HOM05D005573 ORTHO05D007161 5.8e-35 151.8 190 50.0
BolC9t56936H Brassica oleracea HOM05D005573 ORTHO05D007161 1.6e-32 143.7 77 94.8
arahy.Tifrunner.gnm1.ann1.NAZW4C Arachis hypogaea HOM05D005573 ORTHO05D007161 4.6e-32 142.1 104 71.2
Zm00001eb434930 Zea mays HOM05D005573 ORTHO05D007161 1.1e-30 137.5 89 73.0
HanXRQChr00c0345g0573881 Helianthus annuus HOM05D005573 ORTHO05D007161 1.9e-30 136.7 67 100.0
Gohir.A09G045300 Gossypium hirsutum HOM05D005573 ORTHO05D007161 3.6e-29 132.5 70 97.1
TAR625G0941 Trochodendron aralioides HOM05D005573 ORTHO05D007161 2.4e-28 129.8 75 84.0
CAN.G63.13 Capsicum annuum HOM05D005573 ORTHO05D007161 6.9e-28 128.3 77 80.5
Gohir.A09G045446 Gossypium hirsutum HOM05D005573 ORTHO05D007161 2.0e-27 126.7 74 86.5
SEGI_40009 Sequoiadendron giganteum HOM05D005573 ORTHO05D007161 2.0e-27 126.7 101 68.3
Oeu056456.1 Olea europaea HOM05D005573 ORTHO05D007161 1.3e-26 124.0 66 89.4
BolSC47t61119H Brassica oleracea HOM05D005573 ORTHO05D007161 1.7e-26 123.6 64 98.4
CAN.G653.3 Capsicum annuum HOM05D005573 ORTHO05D007161 6.4e-26 121.7 65 93.8
CiPaw.12G056900 Carya illinoinensis HOM05D005573 ORTHO05D007161 1.4e-25 120.6 86 70.9
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 3.5e-24 115.9 79 79.7
BolSC29t60458H Brassica oleracea HOM05D005573 ORTHO05D007161 7.9e-24 114.8 69 81.2
BolSC47t61104H Brassica oleracea HOM05D005573 ORTHO05D007161 7.9e-24 114.8 69 81.2
Solyc11g022610.1 Solanum lycopersicum HOM05D005573 ORTHO05D007161 2.3e-23 113.2 86 75.6
Nn071s42388 Nelumbo nucifera HOM05D005573 ORTHO05D007161 7.4e-22 108.2 90 75.6
TAR375G0006 Trochodendron aralioides HOM05D005573 ORTHO05D007161 8.1e-21 104.8 61 85.2
Mapoly0090s0058 Marchantia polymorpha HOM05D005573 ORTHO05D007161 1.8e-20 103.6 66 74.2
CAN.G331.1 Capsicum annuum HOM05D005573 ORTHO05D007161 6.9e-20 101.7 64 78.1
BolC7t41664H Brassica oleracea HOM05D005573 ORTHO05D007161 2.0e-19 100.1 62 77.4
Oeu052069.1 Olea europaea HOM05D005573 ORTHO05D007161 6.5e-18 95.1 109 54.1
Nn055s41940 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.6e-16 90.5 44 95.5
MELO3C027485.2 Cucumis melo HOM05D005573 ORTHO05D007161 7.9e-16 88.2 50 84.0
HanXRQChr13g0413681 Helianthus annuus HOM05D005573 ORTHO05D029920 1.0e-15 87.8 45 91.1
HanXRQChr13g0413751 Helianthus annuus HOM05D005573 ORTHO05D029920 1.0e-15 87.8 45 91.1
HanXRQChr13g0413831 Helianthus annuus HOM05D005573 ORTHO05D029920 1.0e-15 87.8 45 91.1
HanXRQChr13g0413901 Helianthus annuus HOM05D005573 ORTHO05D029920 1.0e-15 87.8 45 91.1
MELO3C022836.2 Cucumis melo HOM05D005573 ORTHO05D007161 2.3e-15 86.7 49 83.7
Solyc11g022620.1 Solanum lycopersicum HOM05D005573 ORTHO05D007161 3.9e-15 85.9 55 74.5
Oeu042745.1 Olea europaea HOM05D005573 ORTHO05D007161 8.7e-15 84.7 104 51.9
BraSC25t45840Z Brassica rapa HOM05D005573 ORTHO05D007161 1.1e-14 84.3 52 86.5
Nn021s41552 Nelumbo nucifera HOM05D005573 ORTHO05D007161 1.1e-14 84.3 41 97.6
Nitab4.5_0000261g0250 Nicotiana tabacum HOM05D005573 ORTHO05D007161 1.3e-13 80.9 42 90.5
Oeu041772.1 Olea europaea HOM05D005573 ORTHO05D007161 5.3e-12 75.5 58 70.7
Nn055s41939 Nelumbo nucifera HOM05D005573 ORTHO05D007161 3.4e-11 72.8 37 94.6
ClCG11G007200 Citrullus lanatus HOM05D005573 ORTHO05D007161 4.5e-11 72.4 46 73.9
BolC9t55817H Brassica oleracea HOM05D005573 ORTHO05D007161 1.4e-09 67.4 48 75.0
BolSC29t60581H Brassica oleracea HOM05D005573 ORTHO05D007161 2.5e-09 66.6 36 94.4
Glyma.18G203700 Glycine max HOM05D005573 ORTHO05D007161 2.1e-08 63.5 40 80.0
Gorai.006G198900 Gossypium raimondii HOM05D005573 ORTHO05D007161 2.5e-06 56.6 33 72.7


User provided reference genes

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