Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0288711 Helianthus annuus HOM05D001304 ORTHO05D003803 1.7e-70 269.2 134 100.0
HanXRQChr14g0447101 Helianthus annuus HOM05D001304 ORTHO05D003803 5.9e-36 154.5 124 66.1
Lsat_1_v5_gn_2_82261 Lactuca sativa HOM05D001304 ORTHO05D003803 4.7e-33 144.8 124 62.1
Actinidia22785 Actinidia chinensis HOM05D001304 ORTHO05D003803 2.2e-30 136.0 124 55.6
ECA238G0162 Erigeron canadensis HOM05D001304 ORTHO05D003803 3.7e-30 135.2 123 58.5
vmacro18038 Vaccinium macrocarpon HOM05D001304 ORTHO05D003803 1.4e-29 133.3 124 55.6
PGSC0003DMG400030613 Solanum tuberosum HOM05D001304 ORTHO05D003803 4.1e-29 131.7 124 54.8
vmacro05523 Vaccinium macrocarpon HOM05D001304 ORTHO05D003803 7.8e-28 127.5 123 52.0
Nitab4.5_0000291g0100 Nicotiana tabacum HOM05D001304 ORTHO05D003803 1.0e-27 127.1 123 53.7
CAN.G1061.30 Capsicum annuum HOM05D001304 ORTHO05D003803 1.7e-27 126.3 131 51.9
DCAR_025863 Daucus carota HOM05D001304 ORTHO05D003803 3.0e-27 125.6 124 52.4
HanXRQChr12g0375551 Helianthus annuus HOM05D001304 ORTHO05D003803 3.0e-27 125.6 123 53.7
Solyc02g091580.4 Solanum lycopersicum HOM05D001304 ORTHO05D003803 3.9e-27 125.2 124 51.6
Sopen02g036200 Solanum pennellii HOM05D001304 ORTHO05D003803 3.9e-27 125.2 124 51.6
CSS0036027 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 5.0e-27 124.8 127 52.0
Cc07_g07930 Coffea canephora HOM05D001304 ORTHO05D003803 5.0e-27 124.8 124 50.0
TAR381G0455 Trochodendron aralioides HOM05D001304 ORTHO05D003803 5.0e-27 124.8 119 52.9
CSS0037118 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 6.6e-27 124.4 120 53.3
Dinv27004 Davidia involucrata HOM05D001304 ORTHO05D003803 8.6e-27 124.0 124 52.4
Cfa006834 Carpinus fangiana HOM05D001304 ORTHO05D003803 1.1e-26 123.6 127 50.4
Nitab4.5_0007512g0010 Nicotiana tabacum HOM05D001304 ORTHO05D003803 1.1e-26 123.6 123 52.0
COL.COLO4_11684 Corchorus olitorius HOM05D001304 ORTHO05D003803 1.5e-26 123.2 117 53.0
Cpa.g.sc129.15 Carica papaya HOM05D001304 ORTHO05D003803 1.9e-26 122.9 119 50.4
Gohir.D11G214900 Gossypium hirsutum HOM05D001304 ORTHO05D003803 2.5e-26 122.5 119 52.1
AL6G21070 Arabidopsis lyrata HOM05D001304 ORTHO05D003803 3.3e-26 122.1 117 52.1
Carub.0006s0902 Capsella rubella HOM05D001304 ORTHO05D003803 3.3e-26 122.1 117 52.1
Eucgr.I00594 Eucalyptus grandis HOM05D001304 ORTHO05D003803 3.3e-26 122.1 119 51.3
Gohir.A11G208500 Gossypium hirsutum HOM05D001304 ORTHO05D003803 3.3e-26 122.1 119 52.9
Hma1.2p1_0080F.1_g042070 Hydrangea macrophylla HOM05D001304 ORTHO05D003803 3.3e-26 122.1 123 50.4
Lj4A176T36 Lonicera japonica HOM05D001304 ORTHO05D003803 3.3e-26 122.1 119 52.9
QL06p037353 Quercus lobata HOM05D001304 ORTHO05D003803 3.3e-26 122.1 119 50.4
Haze_03928 Corylus avellana HOM05D001304 ORTHO05D003803 4.3e-26 121.7 117 51.3
Thecc.01G084400 Theobroma cacao HOM05D001304 ORTHO05D003803 4.3e-26 121.7 119 52.1
Ciclev10024919m.g Citrus clementina HOM05D001304 ORTHO05D003803 5.6e-26 121.3 118 50.8
A03p04640 Brassica napus HOM05D001304 ORTHO05D003803 7.3e-26 120.9 117 52.1
C03p05320 Brassica napus HOM05D001304 ORTHO05D003803 7.3e-26 120.9 117 52.1
BolC3t13045H Brassica oleracea HOM05D001304 ORTHO05D003803 7.3e-26 120.9 117 52.1
BraA03t09805Z Brassica rapa HOM05D001304 ORTHO05D003803 7.3e-26 120.9 117 52.1
CSS0022889 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 7.3e-26 120.9 127 51.2
CARHR279570 Cardamine hirsuta HOM05D001304 ORTHO05D003803 7.3e-26 120.9 127 51.2
AT5G65620 Arabidopsis thaliana HOM05D001304 ORTHO05D003803 9.5e-26 120.6 127 49.6
Eucgr.L02517 Eucalyptus grandis HOM05D001304 ORTHO05D003803 9.5e-26 120.6 119 50.4
AT5G10540 Arabidopsis thaliana HOM05D001304 ORTHO05D003803 1.2e-25 120.2 117 51.3
BcaC01g02851 Brassica carinata HOM05D001304 ORTHO05D003803 1.2e-25 120.2 128 49.2
Dinv29403 Davidia involucrata HOM05D001304 ORTHO05D003803 1.2e-25 120.2 120 52.5
Gorai.007G230700 Gossypium raimondii HOM05D001304 ORTHO05D003803 1.6e-25 119.8 119 51.3
C03p60130 Brassica napus HOM05D001304 ORTHO05D003803 2.1e-25 119.4 128 48.4
BolC3t18277H Brassica oleracea HOM05D001304 ORTHO05D003803 2.1e-25 119.4 128 48.4
CiPaw.07G043000 Carya illinoinensis HOM05D001304 ORTHO05D003803 2.1e-25 119.4 117 53.0
Gohir.D12G080400 Gossypium hirsutum HOM05D001304 ORTHO05D003803 2.1e-25 119.4 125 51.2
Duzib147G1544 Durio zibethinus HOM05D001304 ORTHO05D003803 2.8e-25 119.0 119 50.4
Thhalv10003666m.g Eutrema salsugineum HOM05D001304 ORTHO05D003803 2.8e-25 119.0 127 49.6
Aa31LG1G16440 Aethionema arabicum HOM05D001304 ORTHO05D003803 3.6e-25 118.6 123 49.6
BraA02t05038Z Brassica rapa HOM05D001304 ORTHO05D003803 3.6e-25 118.6 117 51.3
Thhalv10012826m.g Eutrema salsugineum HOM05D001304 ORTHO05D003803 3.6e-25 118.6 117 50.4
RcHm_v2.0_Chr2g0110061 Rosa chinensis HOM05D001304 ORTHO05D003803 3.6e-25 118.6 117 52.1
Sabra14G0001500 Salix brachista HOM05D001304 ORTHO05D003803 3.6e-25 118.6 117 48.7
Sabra14G0004300 Salix brachista HOM05D001304 ORTHO05D003803 3.6e-25 118.6 117 48.7
arahy.Tifrunner.gnm1.ann1.Y7B72I Arachis hypogaea HOM05D001304 ORTHO05D003803 4.7e-25 118.2 123 48.8
A06p32460 Brassica napus HOM05D001304 ORTHO05D003803 4.7e-25 118.2 117 49.6
BraA06t26170Z Brassica rapa HOM05D001304 ORTHO05D003803 4.7e-25 118.2 117 49.6
Manes.13G103984 Manihot esculenta HOM05D001304 ORTHO05D003803 4.7e-25 118.2 117 49.6
Potri.014G010100 Populus trichocarpa HOM05D001304 ORTHO05D003803 4.7e-25 118.2 121 48.8
Atru.chr3.1159 Acer truncatum HOM05D001304 ORTHO05D003803 6.2e-25 117.9 119 50.4
Atru.chr3.1176 Acer truncatum HOM05D001304 ORTHO05D003803 6.2e-25 117.9 119 50.4
Carub.0008s2649 Capsella rubella HOM05D001304 ORTHO05D003803 6.2e-25 117.9 117 51.3
Gohir.A12G082400 Gossypium hirsutum HOM05D001304 ORTHO05D003803 6.2e-25 117.9 125 51.2
Prupe.6G167100 Prunus persica HOM05D001304 ORTHO05D003803 6.2e-25 117.9 117 51.3
Hund14168 Selenicereus undatus HOM05D001304 ORTHO05D003803 6.2e-25 117.9 119 50.4
CAN.G1061.33 Capsicum annuum HOM05D001304 ORTHO05D003803 8.1e-25 117.5 124 50.8
Gorai.008G088700 Gossypium raimondii HOM05D001304 ORTHO05D003803 8.1e-25 117.5 125 50.4
Sp6g32890 Schrenkiella parvula HOM05D001304 ORTHO05D003803 8.1e-25 117.5 117 50.4
AL112U10040 Arabidopsis lyrata HOM05D001304 ORTHO05D003803 1.1e-24 117.1 117 49.6
AL8G43210 Arabidopsis lyrata HOM05D001304 ORTHO05D003803 1.1e-24 117.1 117 49.6
BcaC03g13317 Brassica carinata HOM05D001304 ORTHO05D003803 1.1e-24 117.1 124 50.0
HPP92_025840 Vanilla planifolia HOM05D001304 ORTHO05D003803 1.1e-24 117.1 119 48.7
DCAR_021620 Daucus carota HOM05D001304 ORTHO05D003803 1.4e-24 116.7 124 49.2
Manes.12G121600 Manihot esculenta HOM05D001304 ORTHO05D003803 1.4e-24 116.7 117 48.7
Prupe.6G209200 Prunus persica HOM05D001304 ORTHO05D003803 1.4e-24 116.7 117 51.3
THA.LOC104798525 Tarenaya hassleriana HOM05D001304 ORTHO05D003803 1.4e-24 116.7 127 48.0
C02p04530 Brassica napus HOM05D001304 ORTHO05D003803 1.8e-24 116.3 117 50.4
Actinidia24167 Actinidia chinensis HOM05D001304 ORTHO05D003803 2.3e-24 115.9 120 51.7
arahy.Tifrunner.gnm1.ann1.2M0S5R Arachis hypogaea HOM05D001304 ORTHO05D003803 2.3e-24 115.9 123 48.0
DCAR_021641 Daucus carota HOM05D001304 ORTHO05D003803 2.3e-24 115.9 124 47.6
Migut.H00290 Erythranthe guttata HOM05D001304 ORTHO05D003803 2.3e-24 115.9 117 51.3
MD01G1044200 Malus domestica HOM05D001304 ORTHO05D003803 2.3e-24 115.9 117 52.1
Nn5g29786 Nelumbo nucifera HOM05D001304 ORTHO05D003803 2.3e-24 115.9 119 49.6
TAR625G1042 Trochodendron aralioides HOM05D001304 ORTHO05D003803 2.3e-24 115.9 119 49.6
CARHR202760 Cardamine hirsuta HOM05D001304 ORTHO05D003803 3.1e-24 115.5 117 48.7
Cfa010111 Carpinus fangiana HOM05D001304 ORTHO05D003803 3.1e-24 115.5 121 50.4
Potri.007G004600 Populus trichocarpa HOM05D001304 ORTHO05D003803 3.1e-24 115.5 125 47.2
PGR031G2110 Punica granatum HOM05D001304 ORTHO05D003803 3.1e-24 115.5 120 49.2
BcaB01g05521 Brassica carinata HOM05D001304 ORTHO05D003803 4.0e-24 115.2 117 51.3
A02p00550 Brassica napus HOM05D001304 ORTHO05D003803 4.0e-24 115.2 117 50.4
BolC2t06413H Brassica oleracea HOM05D001304 ORTHO05D003803 4.0e-24 115.2 127 48.8
Aqoxy6G00643 Aquilegia oxysepala HOM05D001304 ORTHO05D003803 5.2e-24 114.8 119 47.1
CiPaw.08G145000 Carya illinoinensis HOM05D001304 ORTHO05D003803 5.2e-24 114.8 117 48.7
MELO3C016079.2 Cucumis melo HOM05D001304 ORTHO05D003803 5.2e-24 114.8 121 48.8
FAN23G1646 Fragaria x ananassa HOM05D001304 ORTHO05D003803 5.2e-24 114.8 117 50.4
Peaxi162Scf00703g00111 Petunia axillaris HOM05D001304 ORTHO05D003803 5.2e-24 114.8 120 50.0
MSTRG.23623 Avicennia marina HOM05D001304 ORTHO05D003803 6.8e-24 114.4 122 49.2
CSS0040295 Camellia sinensis var. sinensis HOM05D001304 ORTHO05D003803 6.8e-24 114.4 119 50.4
Sp2g28710 Schrenkiella parvula HOM05D001304 ORTHO05D003803 6.8e-24 114.4 117 48.7
CsaV3_4G008500 Cucumis sativus L. HOM05D001304 ORTHO05D003803 8.9e-24 114.0 117 49.6
ECA246G4544 Erigeron canadensis HOM05D001304 ORTHO05D003803 8.9e-24 114.0 123 48.0
FAN28G2550 Fragaria x ananassa HOM05D001304 ORTHO05D003803 8.9e-24 114.0 117 50.4
Phvul.002G143600 Phaseolus vulgaris HOM05D001304 ORTHO05D003803 1.2e-23 113.6 121 47.9
Sabra07G0003300 Salix brachista HOM05D001304 ORTHO05D003803 1.2e-23 113.6 125 46.4
CAN.G1061.35 Capsicum annuum HOM05D001304 ORTHO05D003803 1.5e-23 113.2 124 50.8
FvH4_1g19050 Fragaria vesca HOM05D001304 ORTHO05D003803 1.5e-23 113.2 117 49.6
FAN19G0255 Fragaria x ananassa HOM05D001304 ORTHO05D003803 1.5e-23 113.2 117 49.6
FAN26G1340 Fragaria x ananassa HOM05D001304 ORTHO05D003803 1.5e-23 113.2 117 49.6
ATR0800G081 Amborella trichopoda HOM05D001304 ORTHO05D003803 2.0e-23 112.8 123 48.0
Oeu054746.2 Olea europaea HOM05D001304 ORTHO05D003803 3.4e-23 112.1 120 46.7
BcaB05g21489 Brassica carinata HOM05D001304 ORTHO05D003803 4.4e-23 111.7 117 48.7
VMungo1215G0027 Vigna mungo HOM05D001304 ORTHO05D003803 4.4e-23 111.7 121 47.9
PSO017G2184 Papaver somniferum HOM05D001304 ORTHO05D003803 5.8e-23 111.3 118 46.6
PSO478G2230 Papaver somniferum HOM05D001304 ORTHO05D003803 5.8e-23 111.3 118 46.6
TWI77G0616 Tripterygium wilfordii HOM05D001304 ORTHO05D003803 5.8e-23 111.3 132 46.2
GSVIVG01031425001 Vitis vinifera HOM05D001304 ORTHO05D003803 5.8e-23 111.3 120 48.3
EL10Ac6g13308 Beta vulgaris HOM05D001304 ORTHO05D003803 7.5e-23 110.9 124 46.0
ClCG07G009830 Citrullus lanatus HOM05D001304 ORTHO05D003803 7.5e-23 110.9 124 46.8
Lj2g0015774 Lotus japonicus HOM05D001304 ORTHO05D003803 7.5e-23 110.9 117 47.9
DCAR_010514 Daucus carota HOM05D001304 ORTHO05D003803 9.8e-23 110.5 124 46.0
Glyma.09G202100 Glycine max HOM05D001304 ORTHO05D003803 9.8e-23 110.5 119 46.2
MBI16_g36493_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D003803 1.3e-22 110.2 124 49.2
Medtr5g030940 Medicago truncatula HOM05D001304 ORTHO05D003803 1.3e-22 110.2 117 48.7
Oeu026995.1 Olea europaea HOM05D001304 ORTHO05D003803 1.3e-22 110.2 120 47.5
SalBow3G2076 Salvia bowleyana HOM05D001304 ORTHO05D003803 1.3e-22 110.2 120 47.5
SalBow3G4364 Salvia bowleyana HOM05D001304 ORTHO05D003803 1.3e-22 110.2 120 47.5
Ca_13465_v3 Cicer arietinum L. HOM05D001304 ORTHO05D003803 1.7e-22 109.8 123 45.5
Ah.02g129170 Amaranthus hybridus HOM05D001304 ORTHO05D003803 2.2e-22 109.4 130 46.2
Glyma.01G020300 Glycine max HOM05D001304 ORTHO05D003803 2.2e-22 109.4 123 45.5
Lalb_Chr05g0216211 Lupinus albus HOM05D001304 ORTHO05D003803 2.2e-22 109.4 117 46.2
SGA_v2.0_scaffold121G33140 Striga asiatica HOM05D001304 ORTHO05D003803 2.2e-22 109.4 119 47.1
Atru.chr3.1158 Acer truncatum HOM05D001304 ORTHO05D003803 2.9e-22 109.0 119 49.6
Atru.chr3.1175 Acer truncatum HOM05D001304 ORTHO05D003803 2.9e-22 109.0 119 49.6
MBI16_g33083_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D003803 2.9e-22 109.0 117 49.6
Sc16g0000720 Simmondsia chinensis HOM05D001304 ORTHO05D003803 3.7e-22 108.6 117 48.7
TPR.G37069 Trifolium pratense HOM05D001304 ORTHO05D003803 3.7e-22 108.6 124 45.2
TWI53G1123 Tripterygium wilfordii HOM05D001304 ORTHO05D003803 4.9e-22 108.2 118 45.8
arahy.Tifrunner.gnm1.ann1.NJ8Y8Y Arachis hypogaea HOM05D001304 ORTHO05D003803 6.4e-22 107.8 121 45.5
arahy.Tifrunner.gnm1.ann1.U4N2LF Arachis hypogaea HOM05D001304 ORTHO05D003803 6.4e-22 107.8 121 45.5
Cc00_g02850 Coffea canephora HOM05D001304 ORTHO05D003803 8.3e-22 107.5 117 47.0
Oeu050982.2 Olea europaea HOM05D001304 ORTHO05D003803 1.1e-21 107.1 120 46.7
QL01p014133 Quercus lobata HOM05D001304 ORTHO05D003803 1.1e-21 107.1 124 47.6
CDE02G1292 Ceratophyllum demersum HOM05D001304 ORTHO05D003803 1.4e-21 106.7 118 47.5
MBI16_g10449_MAGBIO Magnolia biondii HOM05D001304 ORTHO05D003803 1.4e-21 106.7 119 47.1
GSVIVG01003850001 Vitis vinifera HOM05D001304 ORTHO05D003803 1.4e-21 106.7 117 46.2
Lalb_Chr09g0325801 Lupinus albus HOM05D001304 ORTHO05D003803 2.4e-21 105.9 126 44.4
ATR0800G138 Amborella trichopoda HOM05D001304 ORTHO05D003803 3.2e-21 105.5 119 47.9
Psat2g133960 Pisum sativum HOM05D001304 ORTHO05D003803 3.2e-21 105.5 119 46.2
Eucgr.I00597 Eucalyptus grandis HOM05D001304 ORTHO05D003803 4.1e-21 105.1 118 44.9
unitig_736.g22352 Utricularia gibba HOM05D001304 ORTHO05D003803 9.2e-21 104.0 119 47.9
Actinidia15931 Actinidia chinensis HOM05D001304 ORTHO05D003803 1.6e-20 103.2 61 78.7
Sed0016167 Sechium edule HOM05D001304 ORTHO05D003803 2.1e-20 102.8 124 42.7
Oeu007435.1 Olea europaea HOM05D001304 ORTHO05D003803 2.7e-20 102.4 120 44.2
Potri.009G151300 Populus trichocarpa HOM05D001304 ORTHO05D003803 4.6e-20 101.7 118 46.6
Lsat_1_v5_gn_1_130700 Lactuca sativa HOM05D001304 ORTHO05D048361 7.8e-20 100.9 103 54.4
AUR62005895 Chenopodium quinoa HOM05D001304 ORTHO05D003803 1.0e-19 100.5 117 43.6
Os02g0830100 Oryza sativa ssp. japonica HOM05D001304 ORTHO05D003803 3.0e-19 99.0 123 40.7
Rhsim10G0079900 Rhododendron simsii HOM05D001304 ORTHO05D003803 3.0e-19 99.0 57 77.2
Zm00001eb259450 Zea mays HOM05D001304 ORTHO05D003803 3.9e-19 98.6 121 42.1
Rhsim10G0080000 Rhododendron simsii HOM05D001304 ORTHO05D003803 1.1e-18 97.1 56 76.8
AagrBONN_evm.TU.Sc2ySwM_117.3512 Anthoceros agrestis HOM05D001304 ORTHO05D003803 2.5e-18 95.9 127 41.7
SalBow3G1603 Salvia bowleyana HOM05D001304 ORTHO05D003803 2.5e-18 95.9 120 44.2
AUR62032883 Chenopodium quinoa HOM05D001304 ORTHO05D003803 5.6e-18 94.7 123 39.8
Sc12g0003840 Simmondsia chinensis HOM05D001304 ORTHO05D003803 5.6e-18 94.7 119 45.4
Nn1g05669 Nelumbo nucifera HOM05D001304 ORTHO05D003803 1.4e-16 90.1 61 67.2
Lj2C429T16 Lonicera japonica HOM05D001304 ORTHO05D003803 1.8e-16 89.7 128 41.4
Mapoly0137s0031 Marchantia polymorpha HOM05D001304 ORTHO05D003803 3.1e-16 89.0 132 37.9
Actinidia16391 Actinidia chinensis HOM05D001304 ORTHO05D003803 4.0e-16 88.6 60 68.3
QL11p013027 Quercus lobata HOM05D001304 ORTHO05D003803 4.0e-16 88.6 119 42.9
CBR_g51495 Chara braunii HOM05D001304 ORTHO05D003803 5.8e-15 84.7 124 37.1
CDE04G3591 Ceratophyllum demersum HOM05D001304 ORTHO05D003803 2.2e-14 82.8 60 60.0
BcaC01g02791 Brassica carinata HOM05D001636 ORTHO05D009134 4.9e-14 81.6 109 44.0
Ah.03g134350 Amaranthus hybridus HOM05D001304 ORTHO05D003803 6.4e-14 81.3 56 64.3
SMO353G0212 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 8.4e-14 80.9 117 37.6
Cre13.g572900 Chlamydomonas reinhardtii HOM05D001304 ORTHO05D003803 2.4e-13 79.3 118 36.4
CARHR217670 Cardamine hirsuta HOM05D001304 ORTHO05D003803 9.2e-13 77.4 53 64.2
Dinv40934 Davidia involucrata HOM05D001304 ORTHO05D003803 4.7e-09 65.1 98 35.7
SMO134G0101 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 4.4e-07 58.5 118 31.4
SMO274G0011 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 4.4e-07 58.5 118 31.4
RcHm_v2.0_Chr7g0233411 Rosa chinensis HOM05D001304 ORTHO05D003803 9.9e-07 57.4 126 31.7
SMO134G0121 Selaginella moellendorffii HOM05D001304 ORTHO05D003803 2.9e-06 55.8 118 30.5


User provided reference genes

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