Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 2.2e-154 548.9 269 100.0
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.9e-126 456.1 269 81.8
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 6.2e-125 451.1 266 83.8
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 1.6e-117 426.4 262 79.4
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.0e-103 380.6 258 69.4
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 5.1e-103 378.3 258 68.6
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.5e-102 376.7 259 69.9
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 1.5e-102 376.7 256 70.7
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.9e-102 376.3 259 69.9
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 4.3e-102 375.2 258 70.5
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 7.3e-102 374.4 259 70.3
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 1.6e-101 373.2 259 69.9
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 3.6e-101 372.1 259 68.0
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 2.4e-100 369.4 258 69.4
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 3.1e-100 369.0 258 68.6
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 6.9e-100 367.9 264 68.2
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 9.0e-100 367.5 259 68.0
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.5e-99 366.7 265 66.8
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 2.6e-99 365.9 258 67.8
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 2.6e-99 365.9 275 65.1
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 3.4e-99 365.5 259 68.0
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 3.4e-99 365.5 258 67.8
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.5e-99 365.2 259 69.9
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 4.5e-99 365.2 264 67.4
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 5.8e-99 364.8 259 69.5
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.8e-99 364.8 258 69.8
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 5.8e-99 364.8 258 66.3
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 7.6e-99 364.4 260 67.3
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.3e-98 363.6 258 68.6
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.3e-98 363.6 264 66.7
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.7e-98 363.2 259 68.3
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.2e-98 362.8 258 69.0
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 2.2e-98 362.8 256 67.6
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 2.9e-98 362.5 272 66.2
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 4.9e-98 361.7 264 65.5
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 6.4e-98 361.3 260 68.5
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 6.4e-98 361.3 258 67.8
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 8.4e-98 360.9 258 69.0
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 8.4e-98 360.9 258 67.8
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 8.4e-98 360.9 258 67.4
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 8.4e-98 360.9 259 66.8
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.1e-97 360.5 258 68.6
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.4e-97 360.1 259 67.2
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 1.4e-97 360.1 258 66.7
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 2.4e-97 359.4 258 69.4
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 3.2e-97 359.0 257 65.8
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 4.2e-97 358.6 258 68.2
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 4.2e-97 358.6 261 67.4
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.2e-96 357.1 262 67.6
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 1.2e-96 357.1 259 68.0
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 1.2e-96 357.1 259 65.6
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.2e-96 357.1 261 65.1
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.1e-96 356.3 257 66.9
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.7e-96 355.9 258 69.0
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 4.6e-96 355.1 261 65.9
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 6.0e-96 354.8 260 65.4
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 7.9e-96 354.4 259 64.9
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 1.0e-95 354.0 261 66.3
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.8e-95 353.2 258 68.6
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 2.3e-95 352.8 258 65.9
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 2.3e-95 352.8 273 64.5
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 2.3e-95 352.8 234 70.1
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 6.7e-95 351.3 262 65.3
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 6.7e-95 351.3 257 66.1
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 8.7e-95 350.9 259 64.5
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.1e-94 350.5 256 66.8
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 1.9e-94 349.7 259 65.3
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.5e-94 349.4 258 65.9
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 3.3e-94 349.0 258 64.7
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 4.3e-94 348.6 262 66.0
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 5.6e-94 348.2 259 64.1
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 5.6e-94 348.2 259 63.7
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 7.4e-94 347.8 259 64.9
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.3e-93 347.1 262 64.9
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 1.6e-93 346.7 259 64.9
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 1.6e-93 346.7 260 64.2
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 2.1e-93 346.3 264 66.3
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.1e-92 344.0 258 64.7
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 1.8e-92 343.2 269 63.6
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 5.3e-92 341.7 259 62.5
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 5.3e-92 341.7 259 62.5
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 5.3e-92 341.7 258 64.0
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 6.9e-92 341.3 258 64.0
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 6.9e-92 341.3 259 64.1
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 6.9e-92 341.3 258 65.5
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 2.0e-91 339.7 259 63.7
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 2.0e-91 339.7 258 63.6
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 4.5e-91 338.6 259 62.5
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 7.6e-91 337.8 259 62.9
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 7.6e-91 337.8 259 62.9
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 9.9e-91 337.4 262 61.8
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 2.2e-90 336.3 293 58.7
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 2.9e-90 335.9 259 62.5
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 6.4e-90 334.7 257 63.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 8.4e-90 334.3 257 63.0
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.2e-89 332.4 266 60.5
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 4.2e-89 332.0 259 63.3
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 5.5e-89 331.6 258 63.6
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 1.2e-88 330.5 262 61.8
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.2e-88 330.5 258 62.4
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 3.0e-87 325.9 259 62.9
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 1.9e-86 323.2 215 70.7
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 7.4e-86 321.2 320 53.1
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 9.6e-86 320.9 218 67.9
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.8e-85 319.3 214 70.6
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 3.7e-85 318.9 239 66.5
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 3.7e-85 318.9 258 59.7
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 6.2e-85 318.2 258 59.3
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 3.1e-84 315.8 260 60.8
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 4.0e-84 315.5 260 59.2
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 9.0e-84 314.3 274 56.6
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 4.5e-83 312.0 213 69.5
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 3.8e-82 308.9 214 65.9
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 6.5e-82 308.1 263 60.5
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 7.9e-80 301.2 197 73.1
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 3.0e-79 299.3 213 66.7
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 6.7e-79 298.1 275 54.2
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 1.3e-77 293.9 193 72.0
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 8.2e-77 291.2 197 73.1
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 1.4e-76 290.4 197 71.6
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 3.1e-76 289.3 245 60.8
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 4.1e-76 288.9 184 72.8
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 2.0e-75 286.6 190 72.6
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 6.1e-72 275.0 206 65.5
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.0e-71 274.2 233 55.8
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 1.3e-71 273.9 238 58.0
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 3.9e-71 272.3 258 53.9
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.5e-70 269.6 232 56.5
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.2e-69 266.5 170 74.7
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 5.3e-68 261.9 246 52.4
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.2e-64 250.8 310 47.1
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.1e-64 250.0 369 42.5
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 6.1e-64 248.4 224 56.2
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 8.8e-63 244.6 258 46.9
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 4.8e-61 238.8 181 65.7
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.2e-57 225.7 233 50.6
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 8.8e-55 218.0 274 48.9
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.0e-50 204.5 203 52.7
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 5.5e-49 198.7 212 50.0
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 7.2e-49 198.4 182 53.3
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 1.3e-45 187.6 178 52.8
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 4.5e-43 179.1 253 40.7
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 6.5e-42 175.3 145 61.4
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 1.2e-38 164.5 138 58.0
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.3e-37 161.0 103 72.8
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 2.2e-37 160.2 113 65.5
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.4e-36 157.5 139 59.0
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 3.1e-36 156.4 273 34.8
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 5.4e-36 155.6 299 35.1
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 3.6e-32 142.9 96 65.6
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.1e-28 129.8 176 42.0
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 1.3e-26 124.4 171 45.0
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.8e-26 122.9 133 50.4
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.6e-24 117.5 149 43.0
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 5.2e-23 112.5 105 52.4
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.3e-17 93.2 122 42.6
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 3.6e-16 89.7 52 78.8
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 3.6e-16 89.7 52 78.8
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 8.0e-16 88.6 70 58.6
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-14 84.7 80 53.8
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 3.7e-13 79.7 75 50.7
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 4.9e-13 79.3 55 63.6
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 4.3e-09 66.2 47 63.8
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 5.2e-07 59.3 35 77.1
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 2.0e-06 57.4 74 39.2


User provided reference genes

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