Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0283291 Helianthus annuus HOM05D000945 ORTHO05D024498 2.1e-35 151.8 73 100.0
HanXRQChr16g0510611 Helianthus annuus HOM05D000945 ORTHO05D024498 5.7e-33 143.7 73 94.5
HanXRQChr06g0168411 Helianthus annuus HOM05D000945 ORTHO05D024498 1.9e-28 128.6 66 93.9
HanXRQChr12g0360171 Helianthus annuus HOM05D000945 ORTHO05D000919 2.4e-15 85.1 47 87.2
HanXRQChr03g0073591 Helianthus annuus HOM05D000945 ORTHO05D024498 9.2e-15 83.2 45 88.9
Lsat_1_v5_gn_5_136840 Lactuca sativa HOM05D000945 ORTHO05D000919 9.2e-15 83.2 47 85.1
Lsat_1_v5_gn_5_136860 Lactuca sativa HOM05D000945 ORTHO05D000919 5.9e-14 80.5 47 80.9
Peaxi162Scf00038g01956 Petunia axillaris HOM05D000945 ORTHO05D000919 7.8e-14 80.1 47 78.7
HanXRQChr10g0311871 Helianthus annuus HOM05D000945 ORTHO05D000919 1.0e-13 79.7 47 80.9
HanXRQChr10g0311881 Helianthus annuus HOM05D000945 ORTHO05D000919 1.3e-13 79.3 47 80.9
ECA234G3038 Erigeron canadensis HOM05D000945 ORTHO05D000919 1.7e-13 79.0 47 78.7
Hma1.2p1_0090F.1_g046070 Hydrangea macrophylla HOM05D000945 ORTHO05D000919 6.6e-13 77.0 46 76.1
Hma1.2p1_0090F.1_g046050 Hydrangea macrophylla HOM05D000945 ORTHO05D000919 8.6e-13 76.6 46 73.9
PGSC0003DMG403022901 Solanum tuberosum HOM05D000945 ORTHO05D000919 8.6e-13 76.6 46 73.9
Nitab4.5_0010758g0010 Nicotiana tabacum HOM05D000945 ORTHO05D000919 1.1e-12 76.3 47 72.3
Migut.I01107 Erythranthe guttata HOM05D000945 ORTHO05D000919 1.5e-12 75.9 46 76.1
Sopen03g040940 Solanum pennellii HOM05D000945 ORTHO05D000919 1.9e-12 75.5 46 73.9
PGSC0003DMG401022901 Solanum tuberosum HOM05D000945 ORTHO05D000919 1.9e-12 75.5 47 70.2
Hma1.2p1_0090F.1_g046060 Hydrangea macrophylla HOM05D000945 ORTHO05D000919 2.5e-12 75.1 46 73.9
Solyc03g122170.4 Solanum lycopersicum HOM05D000945 ORTHO05D000919 2.5e-12 75.1 46 71.7
DCAR_026426 Daucus carota HOM05D000945 ORTHO05D000919 5.6e-12 73.9 46 76.1
Haze_16072 Corylus avellana HOM05D000945 ORTHO05D000919 7.3e-12 73.6 60 56.7
Haze_16070 Corylus avellana HOM05D000945 ORTHO05D000919 9.5e-12 73.2 46 69.6
Dinv37966 Davidia involucrata HOM05D000945 ORTHO05D000919 1.2e-11 72.8 46 71.7
Oeu000389.1 Olea europaea HOM05D000945 ORTHO05D000919 1.2e-11 72.8 46 73.9
SGA_v2.0_scaffold71G23885 Striga asiatica HOM05D000945 ORTHO05D000919 1.2e-11 72.8 46 73.9
Cfa003507 Carpinus fangiana HOM05D000945 ORTHO05D000919 1.6e-11 72.4 46 69.6
MD17G1148900 Malus domestica HOM05D000945 ORTHO05D000919 1.6e-11 72.4 46 69.6
Actinidia32210 Actinidia chinensis HOM05D000945 ORTHO05D000919 2.1e-11 72.0 46 69.6
Cfa003506 Carpinus fangiana HOM05D000945 ORTHO05D000919 2.1e-11 72.0 46 67.4
Haze_16068 Corylus avellana HOM05D000945 ORTHO05D000919 2.1e-11 72.0 46 67.4
PGR049G0003 Punica granatum HOM05D000945 ORTHO05D000919 2.1e-11 72.0 46 73.9
PGR119G0176 Punica granatum HOM05D000945 ORTHO05D000919 2.1e-11 72.0 46 73.9
PGR119G1013 Punica granatum HOM05D000945 ORTHO05D000919 2.1e-11 72.0 46 73.9
Solyc03g122130.3 Solanum lycopersicum HOM05D000945 ORTHO05D000919 2.1e-11 72.0 47 66.0
Sopen03g040920 Solanum pennellii HOM05D000945 ORTHO05D000919 2.1e-11 72.0 47 66.0
Aa31LG8G1360 Aethionema arabicum HOM05D000945 ORTHO05D000919 2.8e-11 71.6 46 73.9
Cfa003505 Carpinus fangiana HOM05D000945 ORTHO05D003600 3.6e-11 71.2 46 69.6
vmacro15058 Vaccinium macrocarpon HOM05D000945 ORTHO05D000919 3.6e-11 71.2 46 67.4
CAN.G862.36 Capsicum annuum HOM05D000945 ORTHO05D000919 4.7e-11 70.9 46 69.6
CARHR088990 Cardamine hirsuta HOM05D000945 ORTHO05D000919 6.1e-11 70.5 46 73.9
Manes.11G016200 Manihot esculenta HOM05D000945 ORTHO05D000919 6.1e-11 70.5 46 65.2
Nitab4.5_0006232g0090 Nicotiana tabacum HOM05D000945 ORTHO05D000919 6.1e-11 70.5 47 68.1
Nitab4.5_0010758g0040 Nicotiana tabacum HOM05D000945 ORTHO05D000919 6.1e-11 70.5 47 68.1
QL09p027361 Quercus lobata HOM05D000945 ORTHO05D000919 6.1e-11 70.5 46 67.4
Aqoxy1G02000 Aquilegia oxysepala HOM05D000945 ORTHO05D000919 8.0e-11 70.1 46 69.6
GSVIVG01016714001 Vitis vinifera HOM05D000945 ORTHO05D000919 8.0e-11 70.1 46 69.6
CANSAT56G4292 Cannabis sativa HOM05D000945 ORTHO05D000919 1.0e-10 69.7 46 71.7
Atru.chr1.4092 Acer truncatum HOM05D000945 ORTHO05D000919 1.4e-10 69.3 46 67.4
Atru.chr2.436 Acer truncatum HOM05D000945 ORTHO05D000919 1.4e-10 69.3 46 67.4
Actinidia24451 Actinidia chinensis HOM05D000945 ORTHO05D000919 1.8e-10 68.9 46 67.4
QL05p003322 Quercus lobata HOM05D000945 ORTHO05D000919 1.8e-10 68.9 46 67.4
TWI59G0812 Tripterygium wilfordii HOM05D000945 ORTHO05D000919 1.8e-10 68.9 46 65.2
MSTRG.10931 Avicennia marina HOM05D000945 ORTHO05D000919 2.3e-10 68.6 46 71.7
Carub.0003s1374 Capsella rubella HOM05D000945 ORTHO05D000919 2.3e-10 68.6 46 69.6
AT3G14130 Arabidopsis thaliana HOM05D000945 ORTHO05D000919 3.1e-10 68.2 46 69.6
FvH4_6g35192 Fragaria vesca HOM05D000945 ORTHO05D000919 3.1e-10 68.2 46 65.2
TAR624G0552 Trochodendron aralioides HOM05D000945 ORTHO05D000919 3.1e-10 68.2 46 65.2
Atru.chr2.434_Atru.chr2.435 Acer truncatum HOM05D000945 ORTHO05D000919 4.0e-10 67.8 46 65.2
Eucgr.F02472 Eucalyptus grandis HOM05D000945 ORTHO05D000919 4.0e-10 67.8 46 63.0
Lj9C535T14 Lonicera japonica HOM05D000945 ORTHO05D000919 5.2e-10 67.4 46 65.2
Nn7g37965 Nelumbo nucifera HOM05D000945 ORTHO05D000919 5.2e-10 67.4 46 67.4
QL05p003334 Quercus lobata HOM05D000945 ORTHO05D000919 5.2e-10 67.4 46 63.0
RcHm_v2.0_Chr2g0146451 Rosa chinensis HOM05D000945 ORTHO05D000919 5.2e-10 67.4 46 63.0
RcHm_v2.0_Chr2g0146471 Rosa chinensis HOM05D000945 ORTHO05D000919 5.2e-10 67.4 46 65.2
TWI59G1190 Tripterygium wilfordii HOM05D000945 ORTHO05D000919 5.2e-10 67.4 46 63.0
AL3G26360 Arabidopsis lyrata HOM05D000945 ORTHO05D000919 6.8e-10 67.0 46 67.4
CARHR089010 Cardamine hirsuta HOM05D000945 ORTHO05D000919 8.9e-10 66.6 46 67.4
Thecc.06G125100 Theobroma cacao HOM05D000945 ORTHO05D000919 8.9e-10 66.6 46 65.2
HPP92_011069 Vanilla planifolia HOM05D000945 ORTHO05D000919 8.9e-10 66.6 46 63.0
CSS0027148 Camellia sinensis var. sinensis HOM05D000945 ORTHO05D000919 1.2e-09 66.2 46 60.9
CSS0033932 Camellia sinensis var. sinensis HOM05D000945 ORTHO05D000919 1.2e-09 66.2 46 60.9
CSS0037062 Camellia sinensis var. sinensis HOM05D000945 ORTHO05D000919 1.2e-09 66.2 46 63.0
Cc04_g01020 Coffea canephora HOM05D000945 ORTHO05D000919 1.2e-09 66.2 46 63.0
COL.COLO4_30800 Corchorus olitorius HOM05D000945 ORTHO05D000919 1.2e-09 66.2 46 65.2
Manes.11G016100 Manihot esculenta HOM05D000945 ORTHO05D000919 1.2e-09 66.2 46 65.2
QL05p003388 Quercus lobata HOM05D000945 ORTHO05D000919 1.2e-09 66.2 46 65.2
THA.LOC104810375 Tarenaya hassleriana HOM05D000945 ORTHO05D000919 1.2e-09 66.2 46 60.9
Thecc.06G125400 Theobroma cacao HOM05D000945 ORTHO05D000919 1.2e-09 66.2 46 65.2
CSS0002156 Camellia sinensis var. sinensis HOM05D000945 ORTHO05D000919 1.5e-09 65.9 46 60.9
Thhalv10020996m.g Eutrema salsugineum HOM05D000945 ORTHO05D000919 1.5e-09 65.9 46 65.2
MBI19_g29887_MAGBIO Magnolia biondii HOM05D000945 ORTHO05D000919 1.5e-09 65.9 46 63.0
PGR049G0007 Punica granatum HOM05D000945 ORTHO05D000919 1.5e-09 65.9 46 63.0
PGR119G0457 Punica granatum HOM05D000945 ORTHO05D000919 1.5e-09 65.9 46 63.0
A05p35320 Brassica napus HOM05D000945 ORTHO05D000919 2.0e-09 65.5 46 65.2
C05p53500 Brassica napus HOM05D000945 ORTHO05D000919 2.0e-09 65.5 46 65.2
BolC5t34027H Brassica oleracea HOM05D000945 ORTHO05D000919 2.0e-09 65.5 46 65.2
Ciclev10025922m.g Citrus clementina HOM05D000945 ORTHO05D000919 2.0e-09 65.5 46 63.0
Sp3g12390 Schrenkiella parvula HOM05D000945 ORTHO05D000919 2.0e-09 65.5 46 63.0
Thecc.06G125200 Theobroma cacao HOM05D000945 ORTHO05D000919 2.0e-09 65.5 46 65.2
Zm00001eb109300 Zea mays HOM05D000945 ORTHO05D000919 2.0e-09 65.5 46 63.0
ClCG07G014430 Citrullus lanatus HOM05D000945 ORTHO05D000919 2.6e-09 65.1 46 63.0
Eucgr.F02471 Eucalyptus grandis HOM05D000945 ORTHO05D000919 2.6e-09 65.1 46 58.7
FvH4_6g35190 Fragaria vesca HOM05D000945 ORTHO05D000919 2.6e-09 65.1 46 60.9
PSO724G1111 Papaver somniferum HOM05D000945 ORTHO05D000919 2.6e-09 65.1 46 67.4
RcHm_v2.0_Chr2g0146501 Rosa chinensis HOM05D000945 ORTHO05D000919 2.6e-09 65.1 46 63.0
A08p20600 Brassica napus HOM05D000945 ORTHO05D024498 3.4e-09 64.7 47 61.7
COL.COLO4_30799 Corchorus olitorius HOM05D000945 ORTHO05D000919 3.4e-09 64.7 46 63.0
A01p39530 Brassica napus HOM05D000945 ORTHO05D000919 4.4e-09 64.3 46 63.0
C01p50470 Brassica napus HOM05D000945 ORTHO05D000919 4.4e-09 64.3 46 63.0
BolC1t04999H Brassica oleracea HOM05D000945 ORTHO05D000919 4.4e-09 64.3 46 63.0
BraA01t03994Z Brassica rapa HOM05D000945 ORTHO05D000919 4.4e-09 64.3 46 63.0
CANSAT56G2196 Cannabis sativa HOM05D000945 ORTHO05D000919 4.4e-09 64.3 46 63.0
CiPaw.01G215500 Carya illinoinensis HOM05D000945 ORTHO05D000919 4.4e-09 64.3 46 65.2
MELO3C022684.2 Cucumis melo HOM05D000945 ORTHO05D000919 4.4e-09 64.3 46 63.0
MD09G1177800 Malus domestica HOM05D000945 ORTHO05D000919 4.4e-09 64.3 46 63.0
Potri.003G069600 Populus trichocarpa HOM05D000945 ORTHO05D000919 4.4e-09 64.3 46 60.9
GSVIVG01016712001 Vitis vinifera HOM05D000945 ORTHO05D000919 4.4e-09 64.3 46 63.0
CsaV3_3G030870 Cucumis sativus L. HOM05D000945 ORTHO05D000919 5.8e-09 63.9 46 60.9
Gohir.D06G149400 Gossypium hirsutum HOM05D000945 ORTHO05D000919 5.8e-09 63.9 46 65.2
Gorai.010G174000 Gossypium raimondii HOM05D000945 ORTHO05D000919 5.8e-09 63.9 46 65.2
AT3G14150 Arabidopsis thaliana HOM05D000945 ORTHO05D000919 7.5e-09 63.5 46 60.9
CiPaw.01G215400 Carya illinoinensis HOM05D000945 ORTHO05D000919 7.5e-09 63.5 45 64.4
PSO386G0250 Papaver somniferum HOM05D000945 ORTHO05D000919 7.5e-09 63.5 46 65.2
Potri.003G069400 Populus trichocarpa HOM05D000945 ORTHO05D000919 7.5e-09 63.5 46 60.9
Prupe.3G037200 Prunus persica HOM05D000945 ORTHO05D000919 7.5e-09 63.5 46 65.2
ATR0681G019 Amborella trichopoda HOM05D000945 ORTHO05D000919 9.8e-09 63.2 46 65.2
PGR049G0009 Punica granatum HOM05D000945 ORTHO05D000919 9.8e-09 63.2 46 63.0
PGR119G1366 Punica granatum HOM05D000945 ORTHO05D000919 9.8e-09 63.2 46 63.0
PGR119G2180 Punica granatum HOM05D000945 ORTHO05D000919 9.8e-09 63.2 46 63.0
CSS0007164 Camellia sinensis var. sinensis HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 58.7
CSS0021508 Camellia sinensis var. sinensis HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 58.7
CSS0022477 Camellia sinensis var. sinensis HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 58.7
Gohir.A06G143100 Gossypium hirsutum HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 63.0
Gohir.A10G056400 Gossypium hirsutum HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 63.0
Gohir.D10G058300 Gossypium hirsutum HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 63.0
Gorai.011G062400 Gossypium raimondii HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 63.0
QL05p003625 Quercus lobata HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 60.9
Sed0024647 Sechium edule HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 56.5
Sc15g0000610 Simmondsia chinensis HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 60.9
Sc15g0000620 Simmondsia chinensis HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 60.9
THA.LOC104822663 Tarenaya hassleriana HOM05D000945 ORTHO05D000919 1.3e-08 62.8 46 60.9
CiPaw.01G215600 Carya illinoinensis HOM05D000945 ORTHO05D000919 1.7e-08 62.4 46 65.2
Sabra03G0040900 Salix brachista HOM05D000945 ORTHO05D000919 1.7e-08 62.4 46 58.7
BraA05t22342Z Brassica rapa HOM05D000945 ORTHO05D000919 2.9e-08 61.6 48 62.5
QL05p003433 Quercus lobata HOM05D000945 ORTHO05D000919 2.9e-08 61.6 46 58.7
Hund18670 Selenicereus undatus HOM05D000945 ORTHO05D000919 2.9e-08 61.6 46 63.0
COL.COLO4_00212 Corchorus olitorius HOM05D000945 ORTHO05D000919 3.7e-08 61.2 46 60.9
Duzib192G0328 Durio zibethinus HOM05D000945 ORTHO05D000919 3.7e-08 61.2 46 60.9
Gohir.A10G056200 Gossypium hirsutum HOM05D000945 ORTHO05D000919 3.7e-08 61.2 46 60.9
Gohir.D10G058100 Gossypium hirsutum HOM05D000945 ORTHO05D000919 3.7e-08 61.2 46 60.9
Gorai.010G173900 Gossypium raimondii HOM05D000945 ORTHO05D000919 3.7e-08 61.2 46 63.0
Gorai.011G062200 Gossypium raimondii HOM05D000945 ORTHO05D000919 3.7e-08 61.2 46 60.9
BcaB04g18820 Brassica carinata HOM05D000945 ORTHO05D000919 4.9e-08 60.8 46 58.7
Os07g0616500 Oryza sativa ssp. japonica HOM05D000945 ORTHO05D000919 4.9e-08 60.8 46 58.7
Potri.003G069300 Populus trichocarpa HOM05D000945 ORTHO05D000919 4.9e-08 60.8 46 58.7
QL05p003548 Quercus lobata HOM05D000945 ORTHO05D000919 4.9e-08 60.8 46 58.7
BcaC01g03957 Brassica carinata HOM05D000945 ORTHO05D000919 6.4e-08 60.5 46 58.7
C03p46740 Brassica napus HOM05D000945 ORTHO05D000919 6.4e-08 60.5 46 58.7
BolC3t16939H Brassica oleracea HOM05D000945 ORTHO05D000919 6.4e-08 60.5 46 58.7
AL3G26380 Arabidopsis lyrata HOM05D000945 ORTHO05D000919 8.3e-08 60.1 46 56.5
AUR62009924 Chenopodium quinoa HOM05D000945 ORTHO05D000919 1.1e-07 59.7 46 60.9
Sc15g0000600 Simmondsia chinensis HOM05D000945 ORTHO05D000919 1.1e-07 59.7 46 58.7
BcaB04g18819 Brassica carinata HOM05D000945 ORTHO05D000919 1.4e-07 59.3 46 63.0
BraA03t13010Z Brassica rapa HOM05D000945 ORTHO05D000919 1.4e-07 59.3 46 56.5
Ciclev10025921m.g Citrus clementina HOM05D000945 ORTHO05D000919 1.4e-07 59.3 46 60.9
A03p38630 Brassica napus HOM05D000945 ORTHO05D000919 2.4e-07 58.5 46 56.5
CSS0023781 Camellia sinensis var. sinensis HOM05D000945 ORTHO05D000919 2.4e-07 58.5 46 56.5
Sabra03G0040800 Salix brachista HOM05D000945 ORTHO05D000919 5.4e-07 57.4 46 56.5
MELO3C022683.2 Cucumis melo HOM05D000945 ORTHO05D000919 7.0e-07 57.0 46 56.5
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 7.0e-07 57.0 46 54.3
EL10Ac7g16446 Beta vulgaris HOM05D000945 ORTHO05D000919 9.2e-07 56.6 46 56.5
C05p53510 Brassica napus HOM05D000945 ORTHO05D000919 9.2e-07 56.6 46 60.9
BolC5t34028H Brassica oleracea HOM05D000945 ORTHO05D000919 9.2e-07 56.6 46 60.9
Solyc03g122140.3 Solanum lycopersicum HOM05D000945 ORTHO05D000919 2.0e-06 55.5 47 57.4
Sopen03g040930 Solanum pennellii HOM05D000945 ORTHO05D000919 2.0e-06 55.5 47 57.4
PGSC0003DMG400022890 Solanum tuberosum HOM05D000945 ORTHO05D000919 2.0e-06 55.5 47 57.4
MELO3C022681.2 Cucumis melo HOM05D000945 ORTHO05D000919 6.0e-06 53.9 46 52.2
CsaV3_3G030860 Cucumis sativus L. HOM05D000945 ORTHO05D000919 7.8e-06 53.5 46 52.2


User provided reference genes

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