Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 0.0e+00 1490.3 753 100.0
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 1.1e-283 979.9 664 72.6
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.8e-270 936.0 685 67.4
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 4.6e-226 788.5 686 59.5
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 3.7e-220 768.8 693 57.0
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.1e-219 767.3 681 57.9
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 3.2e-219 765.8 702 57.8
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 9.2e-219 764.2 701 56.5
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 1.2e-218 763.8 703 56.5
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 2.3e-217 759.6 703 56.2
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 2.8e-215 752.7 703 53.9
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 2.8e-215 752.7 701 55.8
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 3.6e-215 752.3 689 56.0
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 3.1e-214 749.2 699 55.8
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 4.0e-214 748.8 693 54.8
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 5.2e-214 748.4 698 54.7
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 3.4e-213 745.7 687 56.5
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.3e-212 743.8 692 54.5
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 2.9e-212 742.7 693 54.8
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 2.4e-211 739.6 693 54.7
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 7.1e-211 738.0 679 55.4
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 3.5e-210 735.7 697 53.9
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 6.6e-209 731.5 687 56.5
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.1e-208 730.7 700 55.1
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.5e-208 729.6 691 55.6
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 2.5e-208 729.6 680 53.2
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 4.3e-208 728.8 691 55.0
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 3.6e-207 725.7 725 52.6
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 3.6e-207 725.7 698 54.0
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 4.7e-207 725.3 693 55.3
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 4.7e-207 725.3 696 55.5
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 8.1e-207 724.5 739 52.1
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.1e-206 724.2 693 55.7
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.1e-206 724.2 749 51.3
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 5.2e-206 721.8 692 55.2
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 8.9e-206 721.1 687 55.0
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 8.9e-206 721.1 695 54.5
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.7e-204 716.8 673 53.5
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 4.9e-204 715.3 688 54.2
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 4.9e-204 715.3 693 53.2
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 1.1e-203 714.1 695 54.5
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.9e-203 713.4 681 53.9
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.9e-203 713.4 696 53.6
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.9e-203 713.4 662 54.5
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 2.4e-203 713.0 743 50.6
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 4.2e-203 712.2 710 54.2
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 5.4e-203 711.8 710 54.2
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 1.2e-202 710.7 683 54.6
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.1e-202 709.9 693 53.7
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.7e-202 709.5 696 53.7
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 2.7e-202 709.5 680 56.2
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 3.5e-202 709.1 694 53.3
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 4.6e-202 708.8 682 54.7
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 1.0e-201 707.6 743 50.3
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.3e-201 707.2 679 54.6
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 1.3e-201 707.2 701 53.2
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 2.3e-201 706.4 758 49.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 6.6e-201 704.9 676 53.4
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 1.5e-200 703.7 700 51.9
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 2.5e-200 703.0 698 53.2
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 2.5e-200 703.0 718 52.2
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 5.6e-200 701.8 684 53.7
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 9.6e-200 701.0 684 54.7
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 3.6e-199 699.1 742 49.7
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 8.1e-199 698.0 690 54.1
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.4e-198 697.2 676 52.7
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 5.3e-198 695.3 702 51.9
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 5.3e-198 695.3 743 49.5
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 9.0e-198 694.5 693 51.2
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 2.6e-197 693.0 702 51.6
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 4.4e-197 692.2 694 53.2
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 5.8e-197 691.8 704 52.1
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 7.6e-197 691.4 620 57.1
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 7.6e-197 691.4 652 54.1
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 8.4e-196 688.0 700 51.7
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 1.1e-195 687.6 637 55.3
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 2.4e-195 686.4 700 52.0
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 2.4e-195 686.4 667 54.6
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 4.2e-195 685.6 700 51.4
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 4.6e-194 682.2 702 51.4
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 1.0e-193 681.0 691 52.7
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 2.4e-190 669.8 694 51.9
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.7e-188 663.7 692 51.0
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 8.7e-185 651.4 713 50.9
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 5.6e-184 648.7 623 53.5
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.1e-179 634.4 719 47.3
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 2.3e-177 626.7 698 48.6
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 4.3e-176 622.5 570 56.3
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.7e-170 603.2 701 47.8
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.6e-167 594.0 666 48.6
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.4e-166 590.9 692 46.8
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.8e-166 590.5 696 45.7
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 7.2e-163 578.6 669 46.6
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 6.3e-159 565.5 702 44.0
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 8.8e-153 545.0 644 48.4
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.4e-150 537.7 564 51.1
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.7e-146 523.5 550 51.5
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.7e-135 487.6 472 55.3
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.4e-118 431.4 690 37.0
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 1.8e-118 431.0 641 39.0
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 1.3e-111 408.3 604 40.6
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.4e-110 404.1 687 35.2
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 2.3e-108 397.5 464 49.6
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 1.5e-107 394.8 349 57.9
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 4.3e-107 393.3 657 37.1
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 1.9e-102 377.9 611 38.3
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 3.5e-101 373.6 367 50.7
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 7.8e-101 372.5 734 33.8
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 4.3e-91 340.1 734 32.7
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 8.1e-90 335.9 425 46.4
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 3.2e-78 297.4 329 46.8
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 3.1e-65 254.2 322 47.2
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 2.9e-63 247.7 538 32.5
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 8.5e-55 219.5 190 57.4
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 3.6e-53 214.2 293 39.6
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 6.1e-53 213.4 271 46.1
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 2.1e-45 188.3 131 69.5
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 1.3e-42 179.1 141 62.4
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 4.1e-41 174.1 168 50.0
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.5e-38 164.9 452 28.3
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-28 132.5 170 46.5
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 1.5e-27 129.0 119 57.1
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.0e-27 128.6 137 40.1
HanXRQChr10g0283131 Helianthus annuus HOM05D001540 ORTHO05D001520 2.2e-18 98.6 56 98.2
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 2.4e-17 95.1 103 43.7
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.5e-16 90.9 81 48.1
Lsat_1_v5_gn_9_1741 Lactuca sativa HOM05D001540 ORTHO05D001520 7.7e-16 90.1 57 89.5
vmacro14950 Vaccinium macrocarpon HOM05D001540 ORTHO05D001520 1.3e-15 89.4 194 38.7
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.3e-15 88.6 81 45.7
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.9e-15 88.2 74 55.4
CSS0021708 Camellia sinensis var. sinensis HOM05D001540 ORTHO05D001520 5.0e-15 87.4 57 86.0
CSS0042691 Camellia sinensis var. sinensis HOM05D001540 ORTHO05D001520 1.2e-13 82.8 60 81.7
Lj1C41T12 Lonicera japonica HOM05D001540 ORTHO05D001520 1.4e-12 79.3 56 75.0
ECA247G1588 Erigeron canadensis HOM05D001540 ORTHO05D001520 6.8e-12 77.0 61 78.7
Oeu001450.1 Olea europaea HOM05D001540 ORTHO05D001520 6.8e-12 77.0 56 75.0
Rhsim01G0278400 Rhododendron simsii HOM05D001540 ORTHO05D001520 6.8e-12 77.0 59 81.4
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 2.6e-11 75.1 383 23.5
SGA_v2.0_scaffold1G00433 Striga asiatica HOM05D001540 ORTHO05D001520 2.6e-11 75.1 56 75.0
GSVIVG01011044001 Vitis vinifera HOM05D001540 ORTHO05D001520 2.6e-11 75.1 60 68.3
Ca_10389_v3 Cicer arietinum L. HOM05D001540 ORTHO05D001520 3.4e-11 74.7 60 70.0
Duzib211G0097 Durio zibethinus HOM05D001540 ORTHO05D001520 3.4e-11 74.7 60 70.0
Thecc.01G286900 Theobroma cacao HOM05D001540 ORTHO05D001520 5.7e-11 73.9 60 70.0
Psat6g169560 Pisum sativum HOM05D001540 ORTHO05D001520 7.5e-11 73.6 73 60.3
SGA_v2.0_scaffold11G05778 Striga asiatica HOM05D001540 ORTHO05D001520 2.2e-10 72.0 56 73.2
TAR636G1465 Trochodendron aralioides HOM05D001540 ORTHO05D001520 2.8e-10 71.6 59 67.8
MSTRG.18204 Avicennia marina HOM05D001540 ORTHO05D001520 3.7e-10 71.2 56 75.0
Aa31LG1G9190 Aethionema arabicum HOM05D001540 ORTHO05D001520 6.3e-10 70.5 60 71.7
THA.LOC104801208 Tarenaya hassleriana HOM05D001540 ORTHO05D001520 6.3e-10 70.5 60 71.7
MBI19_g13520_MAGBIO Magnolia biondii HOM05D001540 ORTHO05D001520 1.4e-09 69.3 51 80.4
QL02p065267 Quercus lobata HOM05D000009 ORTHO05D000008 2.4e-09 68.6 60 68.3
SalBow3G0971 Salvia bowleyana HOM05D001540 ORTHO05D001520 3.1e-09 68.2 54 70.4
Medtr1g089110 Medicago truncatula HOM05D001540 ORTHO05D001520 4.1e-09 67.8 60 68.3
unitig_0.g638 Utricularia gibba HOM05D001540 ORTHO05D001520 4.1e-09 67.8 56 73.2
AL1G12910 Arabidopsis lyrata HOM05D001540 ORTHO05D001520 7.0e-09 67.0 60 70.0
AT1G03380 Arabidopsis thaliana HOM05D001540 ORTHO05D001520 7.0e-09 67.0 60 70.0
Thhalv10006706m.g Eutrema salsugineum HOM05D001540 ORTHO05D001520 7.0e-09 67.0 60 70.0
Migut.N02132 Erythranthe guttata HOM05D001540 ORTHO05D001520 9.2e-09 66.6 56 66.1
CDE05G0276 Ceratophyllum demersum HOM05D001540 ORTHO05D001520 1.6e-08 65.9 59 66.1
Carub.0001s0251 Capsella rubella HOM05D001540 ORTHO05D001520 2.0e-08 65.5 60 68.3
CARHR002760 Cardamine hirsuta HOM05D001540 ORTHO05D001520 2.0e-08 65.5 60 68.3
Migut.D00247 Erythranthe guttata HOM05D001540 ORTHO05D001520 2.0e-08 65.5 56 71.4
MSTRG.21589 Avicennia marina HOM05D001540 ORTHO05D001520 4.5e-08 64.3 56 67.9
Sp1g02380 Schrenkiella parvula HOM05D001540 ORTHO05D001520 5.9e-08 63.9 60 68.3
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 1.0e-07 63.2 52 53.8
CDE11G0177 Ceratophyllum demersum HOM05D001540 ORTHO05D001520 2.9e-07 61.6 59 59.3
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 3.8e-07 61.2 58 51.7
BraA10t42466Z Brassica rapa HOM05D001540 ORTHO05D001520 6.6e-07 60.5 62 64.5
Zm00001eb349780 Zea mays HOM05D001540 ORTHO05D001520 6.6e-07 60.5 59 59.3
MSTRG.17430 Avicennia marina HOM05D001540 ORTHO05D001520 8.6e-07 60.1 56 64.3
C05p01870 Brassica napus HOM05D001540 ORTHO05D001520 8.6e-07 60.1 61 63.9
A10p01930 Brassica napus HOM05D001540 ORTHO05D001520 1.1e-06 59.7 62 66.1
HPP92_011812 Vanilla planifolia HOM05D001540 ORTHO05D001520 1.1e-06 59.7 59 62.7
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.5e-06 59.3 61 65.6
BolC5t28968H Brassica oleracea HOM05D001540 ORTHO05D001520 1.9e-06 58.9 61 62.3
Duzib138G1839 Durio zibethinus HOM05D001540 ORTHO05D001520 1.9e-06 58.9 60 56.7
Gohir.D12G006600 Gossypium hirsutum HOM05D001540 ORTHO05D001520 1.9e-06 58.9 60 56.7
Gorai.008G006700 Gossypium raimondii HOM05D001540 ORTHO05D001520 1.9e-06 58.9 60 56.7
Aqoxy2G03172 Aquilegia oxysepala HOM05D001540 ORTHO05D001520 5.6e-06 57.4 53 66.0
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 5.6e-06 57.4 123 33.3
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 7.3e-06 57.0 91 41.8
Actinidia24864 Actinidia chinensis HOM05D001540 ORTHO05D001520 9.5e-06 56.6 40 82.5


User provided reference genes

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