Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 3.9e-182 641.3 322 100.0
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 5.6e-56 222.2 134 84.3
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 2.1e-55 220.3 134 83.6
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 3.4e-53 213.0 313 42.8
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 9.8e-53 211.5 155 70.3
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.4e-51 205.7 162 66.7
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.4e-51 205.7 162 66.7
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.6e-50 204.1 162 66.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.6e-50 204.1 162 66.0
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.7e-50 203.4 162 66.0
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 4.6e-50 202.6 167 65.3
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 7.8e-50 201.8 138 73.9
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 8.6e-49 198.4 173 61.3
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 8.6e-49 198.4 173 61.3
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.9e-48 197.2 168 65.5
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 3.3e-48 196.4 128 73.4
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 9.5e-48 194.9 131 74.0
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 2.8e-47 193.4 174 58.0
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.8e-47 193.4 201 53.2
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 4.7e-47 192.6 154 63.0
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 1.1e-46 191.4 130 71.5
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.1e-46 191.4 170 60.0
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.1e-46 191.4 155 63.9
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.4e-46 191.0 167 59.9
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 3.1e-46 189.9 167 59.9
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 5.2e-46 189.1 275 46.9
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 6.8e-46 188.7 163 60.7
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 1.2e-45 188.0 162 60.5
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 3.4e-45 186.4 148 62.2
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 3.4e-45 186.4 148 62.2
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 3.4e-45 186.4 128 71.1
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 4.4e-45 186.0 128 76.6
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 1.7e-44 184.1 163 59.5
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 2.2e-44 183.7 196 52.6
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.8e-44 183.0 154 60.4
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 3.8e-44 183.0 177 55.9
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 4.9e-44 182.6 165 57.6
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 6.4e-44 182.2 160 58.8
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.4e-43 181.0 177 57.1
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.4e-43 180.3 157 60.5
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.2e-43 179.9 160 57.5
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 3.2e-43 179.9 160 60.6
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 3.2e-43 179.9 160 60.6
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 3.2e-43 179.9 160 60.6
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 3.2e-43 179.9 166 57.2
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 4.1e-43 179.5 132 68.2
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.1e-43 179.5 160 57.5
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 7.1e-43 178.7 168 57.1
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 7.1e-43 178.7 126 68.3
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 2.1e-42 177.2 131 67.9
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 2.7e-42 176.8 132 67.4
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.7e-42 176.8 132 64.4
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 4.6e-42 176.0 170 55.9
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 4.6e-42 176.0 122 70.5
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 7.8e-42 175.3 195 53.8
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 1.3e-41 174.5 132 65.2
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 1.3e-41 174.5 132 65.2
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 1.3e-41 174.5 132 65.2
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.3e-41 174.5 188 51.6
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 1.3e-41 174.5 132 67.4
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.7e-41 174.1 156 57.7
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 3.0e-41 173.3 132 64.4
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 3.0e-41 173.3 188 51.6
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 3.0e-41 173.3 170 58.2
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 3.0e-41 173.3 159 58.5
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 3.9e-41 172.9 142 61.3
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 3.9e-41 172.9 156 57.1
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 5.1e-41 172.6 155 57.4
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 5.1e-41 172.6 152 58.6
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 8.6e-41 171.8 142 62.0
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 8.6e-41 171.8 152 57.9
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 8.6e-41 171.8 161 55.9
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 1.5e-40 171.0 156 58.3
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 1.5e-40 171.0 154 59.7
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.5e-40 170.2 127 64.6
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 5.6e-40 169.1 168 54.2
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 9.6e-40 168.3 151 57.6
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 1.2e-39 167.9 128 65.6
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.2e-39 167.9 164 54.9
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.2e-39 167.9 128 68.8
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 2.1e-39 167.2 131 63.4
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 2.1e-39 167.2 220 47.7
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 2.1e-39 167.2 142 59.9
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 3.6e-39 166.4 127 63.8
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 4.7e-39 166.0 121 67.8
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 8.1e-39 165.2 152 56.6
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 3.1e-38 163.3 128 64.1
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 5.2e-38 162.5 161 55.9
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 6.9e-38 162.2 163 52.1
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 8.9e-38 161.8 163 52.1
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 4.4e-37 159.5 162 50.6
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.7e-36 157.5 161 55.9
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.7e-36 157.5 204 48.0
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 3.8e-36 156.4 169 53.8
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 8.4e-36 155.2 161 55.3
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.1e-35 154.8 128 62.5
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.9e-35 154.1 159 49.7
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.2e-35 152.9 151 52.3
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.2e-35 152.9 151 52.3
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 7.1e-35 152.1 276 40.6
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.6e-34 151.0 148 58.1
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 1.0e-33 148.3 130 59.2
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.7e-33 147.5 160 52.5
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 8.7e-33 145.2 147 55.1
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 1.9e-32 144.1 158 49.4
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 3.3e-32 143.3 132 58.3
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 9.0e-30 135.2 148 52.0
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 5.8e-29 132.5 118 61.0
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 5.8e-29 132.5 94 66.0
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.4e-27 127.9 103 62.1
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 7.1e-27 125.6 105 61.9
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 1.6e-26 124.4 93 64.5
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.5e-21 107.8 95 54.7
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 2.0e-21 107.5 81 64.2
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.9e-20 103.6 105 55.2
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 8.4e-20 102.1 67 73.1
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 9.3e-19 98.6 96 53.1
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 4.2e-11 73.2 131 37.4
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 7.1e-11 72.4 69 50.7
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 1.6e-10 71.2 91 42.9
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 3.5e-10 70.1 121 35.5
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 5.1e-09 66.2 100 40.0
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 1.1e-08 65.1 47 66.0
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 2.8e-07 60.5 78 48.7
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 9.0e-06 55.5 122 35.2


User provided reference genes

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