Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 3.2e-242 842.0 701 100.0
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 7.5e-122 442.2 558 69.7
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 5.4e-96 356.3 565 63.9
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 1.3e-62 245.4 432 58.6
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 5.6e-61 240.0 459 44.7
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 9.0e-59 232.6 445 57.3
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.2e-57 228.0 689 52.2
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 6.4e-57 226.5 691 59.6
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 7.9e-55 219.5 439 42.4
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 7.4e-53 213.0 461 44.9
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 8.1e-52 209.5 319 63.6
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 4.0e-51 207.2 417 60.9
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 2.0e-50 204.9 426 35.0
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 1.7e-49 201.8 414 59.7
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 2.9e-49 201.1 420 61.0
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 4.9e-49 200.3 379 50.1
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 6.5e-49 199.9 313 54.3
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 6.5e-49 199.9 416 45.2
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 1.4e-48 198.7 471 54.8
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 3.2e-48 197.6 445 53.9
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 9.3e-48 196.1 390 55.1
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 9.3e-48 196.1 450 58.9
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 2.7e-47 194.5 484 42.1
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 4.6e-47 193.7 378 63.0
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 4.6e-47 193.7 303 52.8
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 1.0e-46 192.6 419 52.0
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 2.5e-45 188.0 263 56.3
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 5.7e-45 186.8 405 43.7
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 9.6e-45 186.0 281 54.8
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 6.3e-44 183.3 457 56.0
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 2.4e-43 181.4 469 54.6
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 2.4e-43 181.4 463 49.0
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 3.1e-43 181.0 416 43.0
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 4.1e-43 180.6 469 54.6
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 1.2e-42 179.1 304 49.7
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 2.0e-42 178.3 409 59.4
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 7.6e-42 176.4 272 53.7
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 1.0e-41 176.0 470 48.1
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 1.3e-41 175.6 287 47.0
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 3.8e-41 174.1 414 57.0
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 3.8e-41 174.1 275 54.2
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 1.4e-40 172.2 254 53.9
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 1.9e-40 171.8 291 51.2
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 1.9e-40 171.8 294 52.0
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 1.9e-40 171.8 295 52.2
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 1.9e-40 171.8 274 53.3
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.5e-40 170.2 273 52.4
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 5.5e-40 170.2 259 56.0
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 9.3e-40 169.5 305 49.2
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 1.2e-39 169.1 312 49.4
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 1.2e-39 169.1 380 52.9
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 1.6e-39 168.7 260 53.1
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.6e-39 168.7 273 52.4
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.6e-39 168.7 408 40.7
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 2.7e-39 167.9 260 53.8
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 6.1e-39 166.8 314 49.7
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 6.1e-39 166.8 269 52.8
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 1.3e-38 165.6 263 53.6
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 1.3e-38 165.6 263 53.6
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 2.3e-38 164.9 295 50.8
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 1.1e-37 162.5 414 55.1
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 1.5e-37 162.2 419 55.1
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.5e-37 161.4 297 49.8
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 2.5e-37 161.4 316 48.4
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 4.3e-37 160.6 260 52.7
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 7.4e-37 159.8 282 50.7
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 9.7e-37 159.5 276 50.0
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 1.3e-36 159.1 260 51.5
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.3e-36 159.1 458 52.8
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 1.6e-36 158.7 316 46.8
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 1.6e-36 158.7 316 46.8
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 3.7e-36 157.5 319 46.4
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 1.1e-35 156.0 266 50.4
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 2.4e-35 154.8 316 46.8
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 6.9e-35 153.3 259 52.9
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 1.5e-34 152.1 288 50.3
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 2.6e-34 151.4 323 46.4
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 2.6e-34 151.4 260 50.4
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 1.0e-33 149.4 312 43.9
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 2.2e-33 148.3 312 43.6
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 2.2e-33 148.3 260 50.0
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 1.1e-32 146.0 325 42.5
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 4.6e-31 140.6 362 40.3
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 2.5e-29 134.8 240 49.6
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 2.4e-27 128.3 220 55.9
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 4.1e-27 127.5 414 49.8
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 6.9e-27 126.7 171 46.2
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 9.1e-27 126.3 223 56.5
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 5.9e-26 123.6 209 55.0
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 5.9e-26 123.6 227 52.9
BraA05t22010Z Brassica rapa HOM05D006707 ORTHO05D008243 6.5e-25 120.2 270 31.1
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 6.5e-25 120.2 209 55.0
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 3.2e-24 117.9 210 54.8
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 4.2e-24 117.5 209 53.6
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 1.0e-22 112.8 322 53.7
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 1.8e-22 112.1 137 46.7
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 5.1e-22 110.5 229 49.8
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 1.1e-21 109.4 411 45.3
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.5e-21 109.0 329 48.6
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 5.7e-21 107.1 413 41.2
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 3.1e-19 101.3 245 43.7
arahy.Tifrunner.gnm1.ann1.1F7K7B Arachis hypogaea HOM05D006707 ORTHO05D008243 4.5e-18 97.4 88 55.7
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 5.9e-18 97.1 397 24.9
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 6.1e-15 87.0 402 24.1
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 1.4e-14 85.9 253 44.3
Lj5P156T63 Lonicera japonica HOM05D006707 ORTHO05D008243 1.8e-14 85.5 66 62.1
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 3.0e-14 84.7 119 45.4
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 4.5e-10 70.9 70 45.7
QL10p028425 Quercus lobata HOM05D006707 ORTHO05D008243 7.7e-10 70.1 126 33.3
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.5e-08 65.1 58 51.7
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 2.5e-08 65.1 58 51.7
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 5.5e-08 63.9 210 24.8
A05p31780 Brassica napus HOM05D006707 ORTHO05D008243 1.8e-06 58.9 49 53.1
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 2.3e-06 58.5 39 59.0


User provided reference genes

Program Settings