Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 1.7e-169 599.4 322 100.0
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 7.4e-109 397.9 324 72.5
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 2.6e-77 293.1 330 58.5
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 1.7e-76 290.4 268 68.3
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 2.4e-75 286.6 191 80.1
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 1.5e-72 277.3 202 74.3
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 1.9e-72 276.9 184 79.3
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 2.5e-72 276.6 259 66.0
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 2.5e-72 276.6 323 54.8
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 3.3e-72 276.2 173 85.5
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 3.3e-72 276.2 177 83.1
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 3.3e-72 276.2 185 78.9
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 2.8e-71 273.1 319 55.5
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 4.7e-71 272.3 325 57.2
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 6.1e-71 271.9 175 82.3
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 6.1e-71 271.9 175 82.3
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 5.2e-70 268.9 180 78.3
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 8.9e-70 268.1 175 81.1
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 8.9e-70 268.1 176 78.4
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 1.2e-69 267.7 176 79.5
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 1.2e-69 267.7 182 78.0
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 1.5e-69 267.3 176 78.4
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 4.4e-69 265.8 186 74.7
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 5.7e-69 265.4 176 77.8
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 7.5e-69 265.0 165 84.8
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 2.2e-68 263.5 325 53.8
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 4.9e-68 262.3 176 77.8
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 1.1e-67 261.2 342 53.8
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 1.4e-67 260.8 176 79.0
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 4.1e-67 259.2 311 53.4
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 5.4e-67 258.8 192 73.4
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.2e-66 257.7 337 49.3
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 1.2e-66 257.7 367 48.5
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 2.0e-66 256.9 176 77.3
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 3.5e-66 256.1 165 81.8
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 4.6e-66 255.8 346 51.7
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 4.6e-66 255.8 169 80.5
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 5.9e-66 255.4 326 53.7
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 7.8e-66 255.0 164 79.3
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 1.0e-65 254.6 342 51.2
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 5.0e-65 252.3 185 72.4
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 5.0e-65 252.3 185 72.4
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 5.0e-65 252.3 185 72.4
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 6.6e-65 251.9 168 78.6
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 8.6e-65 251.5 192 71.4
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.5e-64 250.8 323 52.9
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 4.3e-64 249.2 169 76.9
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 4.3e-64 249.2 176 73.3
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 5.6e-64 248.8 317 53.9
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 7.3e-64 248.4 181 72.9
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 7.3e-64 248.4 182 72.0
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 1.2e-63 247.7 170 74.7
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 1.6e-63 247.3 169 75.1
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 3.6e-63 246.1 185 68.6
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 3.6e-63 246.1 166 78.9
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 4.7e-63 245.7 171 73.1
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 6.2e-63 245.4 165 78.2
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 1.8e-62 243.8 306 54.9
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 1.8e-62 243.8 319 49.5
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 4.0e-62 242.7 194 70.6
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 5.2e-62 242.3 177 72.9
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 4.4e-61 239.2 175 73.1
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 4.4e-61 239.2 176 70.5
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 7.5e-61 238.4 168 76.2
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 7.5e-61 238.4 324 52.5
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 7.5e-61 238.4 165 77.0
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 2.2e-60 236.9 311 52.4
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 2.2e-60 236.9 176 70.5
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 3.7e-60 236.1 168 73.8
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 4.9e-60 235.7 330 47.3
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 4.9e-60 235.7 180 69.4
MBI01_g01269_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 1.4e-59 234.2 166 75.3
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 1.2e-58 231.1 186 69.9
AUR62038132 Chenopodium quinoa HOM05D000073 ORTHO05D000033 2.0e-58 230.3 163 76.7
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 7.8e-58 228.4 171 72.5
Glyma.15G023900 Glycine max HOM05D006300 ORTHO05D007623 3.0e-57 226.5 173 71.7
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 6.6e-57 225.3 171 71.3
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 6.6e-57 225.3 171 71.3
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 1.1e-56 224.6 174 71.3
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 1.5e-56 224.2 173 71.7
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 4.3e-56 222.6 360 44.7
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.8e-55 219.9 164 72.0
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 6.2e-55 218.8 164 70.7
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 6.2e-55 218.8 205 61.0
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 8.1e-55 218.4 164 72.0
Phvul.005G159900 Phaseolus vulgaris HOM05D006300 ORTHO05D007623 8.1e-55 218.4 171 71.3
Psat4g199680 Pisum sativum HOM05D006300 ORTHO05D007623 1.1e-54 218.0 167 71.9
CDE04G2687 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 2.3e-54 216.9 164 72.6
CDE06G2767 Ceratophyllum demersum HOM05D006300 ORTHO05D007623 1.2e-53 214.5 174 68.4
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 9.8e-53 211.5 276 51.4
VMungo1080G1020 Vigna mungo HOM05D006300 ORTHO05D007623 2.2e-52 210.3 159 74.2
SGA_v2.0_scaffold127G34049 Striga asiatica HOM05D006300 ORTHO05D007623 2.4e-51 206.8 180 65.0
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 3.2e-51 206.5 158 68.4
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 1.2e-50 204.5 181 62.4
Medtr8g016260 Medicago truncatula HOM05D006300 ORTHO05D007623 1.6e-50 204.1 195 60.0
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 3.1e-46 189.9 144 67.4
Mapoly0001s0383 Marchantia polymorpha HOM05D006300 ORTHO05D007623 3.1e-46 189.9 166 60.8
AagrBONN_evm.TU.Sc2ySwM_228.500 Anthoceros agrestis HOM05D006300 ORTHO05D007623 6.8e-46 188.7 166 62.0
ATR0026G017 Amborella trichopoda HOM05D006300 ORTHO05D007623 5.8e-45 185.7 176 59.1
Oeu039964.1 Olea europaea HOM05D006300 ORTHO05D007623 5.8e-45 185.7 127 77.2
Ca_28052_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.7e-44 184.1 149 65.8
Ca_30533_v3 Cicer arietinum L. HOM05D006300 ORTHO05D007623 1.7e-44 184.1 149 65.8
Pp3c7_7340 Physcomitrium patens HOM05D006300 ORTHO05D007623 1.1e-43 181.4 164 59.8
FAN09G0301 Fragaria x ananassa HOM05D006300 ORTHO05D007623 1.3e-41 174.5 171 60.8
Cpa.g.sc25.55 Carica papaya HOM05D006300 ORTHO05D007623 1.6e-39 167.5 105 81.0
HPP92_003967 Vanilla planifolia HOM05D006300 ORTHO05D007623 3.4e-37 159.8 126 70.6
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 1.1e-35 154.8 248 46.8
TPR.G7922 Trifolium pratense HOM05D006300 ORTHO05D007623 7.1e-35 152.1 121 70.2
Os01g0197400 Oryza sativa ssp. japonica HOM05D006300 ORTHO05D007623 1.2e-26 124.8 177 40.7
Zm00001eb337890 Zea mays HOM05D006300 ORTHO05D007623 1.8e-25 120.9 167 41.9
arahy.Tifrunner.gnm1.ann1.046NH9 Arachis hypogaea HOM05D006300 ORTHO05D007623 8.7e-25 118.6 110 63.6
CSS0024626 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 2.5e-24 117.1 64 92.2
COL.COLO4_30657 Corchorus olitorius HOM05D001008 ORTHO05D007623 1.4e-22 111.3 73 80.8
arahy.Tifrunner.gnm1.ann1.Z85M5C Arachis hypogaea HOM05D006300 ORTHO05D007623 2.9e-20 103.6 110 58.2
arahy.Tifrunner.gnm1.ann1.RJ4DBV Arachis hypogaea HOM05D006300 ORTHO05D007623 6.2e-15 85.9 75 66.7
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 4.0e-14 83.2 189 41.3
MBI06_g20962_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.9e-12 77.0 41 90.2
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 1.1e-11 75.1 44 79.5
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 1.4e-11 74.7 53 71.7
MBI09_g03017_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 2.5e-11 73.9 39 89.7
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 5.5e-11 72.8 45 80.0
Sed0006903 Sechium edule HOM05D006300 ORTHO05D007623 1.6e-10 71.2 61 55.7
MBI07_g16251_MAGBIO Magnolia biondii HOM05D001001 ORTHO05D000808 2.1e-10 70.9 129 41.1
arahy.Tifrunner.gnm1.ann1.IE7N3Z Arachis hypogaea HOM05D006300 ORTHO05D007623 3.5e-10 70.1 109 45.9
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 5.1e-09 66.2 43 72.1
arahy.Tifrunner.gnm1.ann1.24L57E Arachis hypogaea HOM05D006300 ORTHO05D007623 6.3e-07 59.3 78 52.6


User provided reference genes

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