Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 3.4e-307 1057.7 644 100.0
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 3.0e-194 682.6 512 72.3
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 3.0e-194 682.6 540 71.5
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 4.4e-193 678.7 541 71.0
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 4.5e-182 642.1 484 71.5
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 9.5e-164 581.3 545 60.2
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.8e-163 579.7 400 74.5
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 4.7e-163 578.9 485 64.7
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.3e-162 576.6 502 63.1
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 3.0e-162 576.2 462 66.5
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 4.0e-162 575.9 477 64.8
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 9.8e-161 571.2 516 61.4
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 1.4e-159 567.4 536 57.8
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.8e-159 567.0 529 58.4
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.9e-157 559.7 557 56.2
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.5e-156 557.4 530 59.6
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 6.1e-155 552.0 449 66.4
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.8e-154 550.4 516 58.9
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 3.1e-154 549.7 469 62.3
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 1.2e-153 547.7 428 67.3
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 2.0e-153 547.0 491 60.1
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 7.5e-153 545.0 518 57.9
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 7.5e-153 545.0 490 60.8
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 7.5e-153 545.0 490 61.0
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 2.2e-152 543.5 523 57.9
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 6.4e-152 542.0 514 58.0
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.1e-151 541.2 493 61.5
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.4e-151 540.8 491 60.5
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 2.4e-151 540.0 492 58.5
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 3.2e-151 539.7 532 59.4
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 5.4e-151 538.9 440 63.4
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.6e-150 537.3 528 57.0
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 2.7e-150 536.6 515 58.4
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 7.8e-150 535.0 515 58.4
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.0e-149 534.6 453 62.3
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 1.0e-149 534.6 490 59.4
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 3.0e-149 533.1 517 59.0
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 3.0e-149 533.1 422 65.2
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.5e-148 530.8 493 60.6
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 2.5e-148 530.0 470 61.7
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.2e-147 527.7 454 60.4
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.6e-147 527.3 522 57.7
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 2.1e-147 526.9 502 59.2
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.6e-147 526.2 471 63.3
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 4.7e-147 525.8 446 63.9
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 4.7e-147 525.8 526 56.7
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.1e-146 524.6 453 60.7
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 1.8e-146 523.9 515 56.3
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.2e-145 521.2 505 58.0
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.5e-145 520.8 437 64.3
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 2.0e-145 520.4 563 53.3
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 2.0e-145 520.4 519 57.4
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 2.0e-145 520.4 478 58.4
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 1.7e-144 517.3 518 56.9
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.2e-144 516.9 530 56.6
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 2.9e-144 516.5 460 60.2
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.9e-144 516.5 486 59.1
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.9e-144 516.5 530 56.4
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 4.9e-144 515.8 407 64.1
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 4.9e-144 515.8 511 58.1
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 8.3e-144 515.0 518 56.6
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 8.3e-144 515.0 497 58.1
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 4.1e-143 512.7 528 56.8
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 7.0e-143 511.9 520 56.3
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.6e-142 510.8 459 59.9
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 3.5e-142 509.6 528 56.4
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.6e-142 509.2 530 55.7
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 1.3e-141 507.7 522 55.7
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 1.3e-141 507.7 384 66.4
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 5.1e-141 505.8 528 56.4
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.9e-140 503.8 414 63.0
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.5e-140 503.4 530 56.4
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 4.3e-140 502.7 519 55.1
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 7.3e-140 501.9 471 59.0
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 4.7e-139 499.2 530 55.1
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 4.7e-139 499.2 488 56.6
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 6.8e-138 495.4 518 54.2
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 6.8e-138 495.4 513 54.6
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 8.9e-138 495.0 456 59.6
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.2e-137 494.6 401 63.3
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 1.5e-137 494.2 495 57.4
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 2.6e-137 493.4 470 58.1
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 2.9e-136 490.0 463 57.7
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 3.7e-136 489.6 541 52.5
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.2e-135 486.5 450 57.6
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 3.2e-135 486.5 518 54.2
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 3.2e-135 486.5 463 57.5
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 6.0e-134 482.3 438 59.6
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.3e-133 481.1 409 60.4
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 1.7e-133 480.7 397 62.0
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 5.1e-133 479.2 442 57.9
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 8.6e-133 478.4 534 53.0
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.1e-132 478.0 519 54.3
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.5e-132 477.6 376 62.8
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 3.3e-132 476.5 481 57.0
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.8e-131 473.4 394 63.5
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 2.6e-129 466.8 417 57.8
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 5.8e-129 465.7 473 56.2
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.2e-126 458.0 462 54.1
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.6e-126 456.1 478 54.2
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 4.6e-126 456.1 393 61.6
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 9.6e-124 448.4 468 52.8
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 1.3e-123 448.0 402 62.9
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 2.4e-122 443.7 518 50.6
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 4.0e-122 443.0 392 58.4
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 4.0e-122 443.0 479 52.6
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 4.9e-120 436.0 328 65.9
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 7.1e-119 432.2 467 52.9
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 3.3e-116 423.3 382 57.6
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 8.1e-115 418.7 422 53.6
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 7.4e-108 395.6 401 54.9
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 6.4e-104 382.5 286 69.2
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 3.7e-99 366.7 327 57.2
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 2.5e-95 354.0 347 57.9
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 3.2e-95 353.6 422 45.7
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 7.1e-95 352.4 373 50.9
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 1.3e-93 348.2 349 54.2
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.5e-92 344.7 422 47.4
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 2.4e-90 337.4 405 45.4
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 6.5e-80 302.8 360 48.9
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.6e-76 290.8 232 63.8
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 4.4e-76 290.0 481 42.2
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 5.7e-68 263.1 329 48.3
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 4.5e-65 253.4 384 40.4
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 1.1e-58 232.3 210 59.0
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.9e-56 224.2 356 41.9
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 6.5e-56 223.0 184 61.4
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.0e-53 215.7 492 33.5
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 2.0e-49 201.4 265 48.7
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 2.3e-45 188.0 193 51.8
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 4.4e-44 183.7 150 61.3
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 4.1e-42 177.2 123 66.7
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 5.0e-40 170.2 515 28.0
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 2.7e-33 147.9 94 76.6
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.7e-27 128.6 184 45.7
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 3.7e-27 127.5 95 62.1
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 8.3e-27 126.3 95 62.1
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 1.5e-23 115.5 442 24.7
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 9.2e-18 96.3 116 50.0
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 4.6e-17 94.0 87 55.2
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 8.1e-14 83.2 106 48.1
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 1.1e-13 82.8 127 46.5
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 4.0e-13 80.9 120 43.3
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 3.4e-12 77.8 160 34.4
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 3.2e-10 71.2 125 41.6
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 9.3e-10 69.7 86 50.0
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 1.7e-08 65.5 73 57.5
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 1.5e-07 62.4 85 49.4
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 1.9e-07 62.0 44 68.2
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 9.6e-07 59.7 129 41.1
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 3.6e-06 57.8 70 42.9


User provided reference genes

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