Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0275211 Helianthus annuus HOM05D005859 ORTHO05D007576 4.3e-89 331.3 164 100.0
HanXRQChr07g0193381 Helianthus annuus HOM05D005859 ORTHO05D007576 5.5e-84 314.3 157 96.8
ECA238G0328 Erigeron canadensis HOM05D005859 ORTHO05D007576 1.4e-79 299.7 158 91.1
Lsat_1_v5_gn_5_41801 Lactuca sativa HOM05D005859 ORTHO05D007576 9.1e-79 297.0 157 90.4
FvH4_2g36340 Fragaria vesca HOM05D005859 ORTHO05D007576 1.3e-77 293.1 157 87.9
FAN15G0047 Fragaria x ananassa HOM05D005859 ORTHO05D007576 1.3e-77 293.1 157 87.9
FAN20G1422 Fragaria x ananassa HOM05D005859 ORTHO05D007576 2.2e-77 292.4 157 87.3
RcHm_v2.0_Chr6g0305541 Rosa chinensis HOM05D005859 ORTHO05D007576 2.2e-77 292.4 157 87.3
Lalb_Chr11g0064301 Lupinus albus HOM05D005859 ORTHO05D007576 2.9e-77 292.0 158 86.7
Lj1g0020437 Lotus japonicus HOM05D005859 ORTHO05D007576 6.5e-77 290.8 158 87.3
Ciclev10009277m.g Citrus clementina HOM05D005859 ORTHO05D007576 8.5e-77 290.4 158 87.3
Prupe.1G454800 Prunus persica HOM05D005859 ORTHO05D007576 1.4e-76 289.7 157 86.0
Dinv07263 Davidia involucrata HOM05D005859 ORTHO05D007576 1.9e-76 289.3 158 87.3
VMungo1309G0784 Vigna mungo HOM05D005859 ORTHO05D007576 2.5e-76 288.9 158 86.7
CsaV3_2G031130 Cucumis sativus L. HOM05D005859 ORTHO05D007576 3.2e-76 288.5 157 87.3
DCAR_010833 Daucus carota HOM05D005859 ORTHO05D007576 3.2e-76 288.5 157 87.3
Phvul.009G104500 Phaseolus vulgaris HOM05D005859 ORTHO05D007576 3.2e-76 288.5 158 86.7
Duzib151G0446 Durio zibethinus HOM05D005859 ORTHO05D007576 7.2e-76 287.3 157 87.9
Duzib151G0554 Durio zibethinus HOM05D005859 ORTHO05D007576 7.2e-76 287.3 157 87.9
Ah.07g199340 Amaranthus hybridus HOM05D005859 ORTHO05D007576 9.4e-76 287.0 157 86.0
CSS0019957 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 9.4e-76 287.0 159 86.2
MD08G1121000 Malus domestica HOM05D005859 ORTHO05D007576 9.4e-76 287.0 156 85.9
Atru.chr7.2673 Acer truncatum HOM05D005859 ORTHO05D007576 1.2e-75 286.6 158 87.3
AUR62007184 Chenopodium quinoa HOM05D005859 ORTHO05D007576 1.2e-75 286.6 157 86.0
Rhsim05G0088100 Rhododendron simsii HOM05D005859 ORTHO05D007576 1.2e-75 286.6 158 86.1
Thecc.04G293600 Theobroma cacao HOM05D005859 ORTHO05D007576 1.2e-75 286.6 158 86.1
Glyma.04G078700 Glycine max HOM05D005859 ORTHO05D007576 1.6e-75 286.2 158 86.1
Gohir.D09G062800 Gossypium hirsutum HOM05D005859 ORTHO05D007576 1.6e-75 286.2 157 87.9
CANSAT64G2965 Cannabis sativa HOM05D005859 ORTHO05D007576 2.1e-75 285.8 161 84.5
MELO3C011163.2 Cucumis melo HOM05D005859 ORTHO05D007576 2.1e-75 285.8 157 86.6
Psat5g022960 Pisum sativum HOM05D005859 ORTHO05D007576 2.7e-75 285.4 157 85.4
PGR042G0112 Punica granatum HOM05D005859 ORTHO05D007576 2.7e-75 285.4 157 86.6
Rhsim02G0125100 Rhododendron simsii HOM05D005859 ORTHO05D007576 2.7e-75 285.4 158 85.4
Gorai.006G077600 Gossypium raimondii HOM05D005859 ORTHO05D007576 3.6e-75 285.0 157 87.9
Potri.006G277100 Populus trichocarpa HOM05D005859 ORTHO05D007576 3.6e-75 285.0 157 86.0
Sed0013908 Sechium edule HOM05D005859 ORTHO05D007576 3.6e-75 285.0 157 86.6
Ca_15630_v3 Cicer arietinum L. HOM05D005859 ORTHO05D007576 4.7e-75 284.6 158 84.8
Solyc02g068650.2 Solanum lycopersicum HOM05D005859 ORTHO05D007576 4.7e-75 284.6 158 86.1
Actinidia22411 Actinidia chinensis HOM05D005859 ORTHO05D007576 6.1e-75 284.3 158 85.4
QL12p026076 Quercus lobata HOM05D005859 ORTHO05D007576 6.1e-75 284.3 158 85.4
Sabra06G0214800 Salix brachista HOM05D005859 ORTHO05D007576 6.1e-75 284.3 157 86.0
ClCG08G012440 Citrullus lanatus HOM05D005859 ORTHO05D007576 8.0e-75 283.9 157 86.0
Potri.018G003900 Populus trichocarpa HOM05D005859 ORTHO05D007576 8.0e-75 283.9 161 83.2
Glyma.06G080300 Glycine max HOM05D005859 ORTHO05D007576 1.0e-74 283.5 158 85.4
Sabra18G0009500 Salix brachista HOM05D005859 ORTHO05D007576 1.0e-74 283.5 161 83.2
EL10Ac5g12246 Beta vulgaris HOM05D005859 ORTHO05D007576 1.4e-74 283.1 156 85.9
Gohir.A09G063900 Gossypium hirsutum HOM05D005859 ORTHO05D007576 1.4e-74 283.1 157 86.0
Medtr3g109360 Medicago truncatula HOM05D005859 ORTHO05D007576 1.4e-74 283.1 157 85.4
Sc10g0009100 Simmondsia chinensis HOM05D005859 ORTHO05D007576 1.4e-74 283.1 157 84.7
PGSC0003DMG400010428 Solanum tuberosum HOM05D005859 ORTHO05D007576 1.4e-74 283.1 159 84.9
THA.LOC104814931 Tarenaya hassleriana HOM05D005859 ORTHO05D007576 1.8e-74 282.7 157 86.0
COL.COLO4_34684 Corchorus olitorius HOM05D005859 ORTHO05D007576 2.3e-74 282.3 157 85.4
Haze_21816 Corylus avellana HOM05D005859 ORTHO05D007576 2.3e-74 282.3 158 84.2
Sed0022456 Sechium edule HOM05D005859 ORTHO05D007576 2.3e-74 282.3 157 85.4
CAN.G149.19 Capsicum annuum HOM05D005859 ORTHO05D007576 3.0e-74 282.0 156 85.3
TPR.G1368 Trifolium pratense HOM05D005859 ORTHO05D007576 3.0e-74 282.0 157 84.1
Aqoxy7G02813 Aquilegia oxysepala HOM05D005859 ORTHO05D007576 3.9e-74 281.6 157 85.4
Cfa013324 Carpinus fangiana HOM05D005859 ORTHO05D007576 3.9e-74 281.6 158 84.2
MSTRG.12122 Avicennia marina HOM05D005859 ORTHO05D007576 5.2e-74 281.2 157 85.4
Sabra18G0001700 Salix brachista HOM05D005859 ORTHO05D007576 5.2e-74 281.2 161 82.6
TWI63G1176 Tripterygium wilfordii HOM05D005859 ORTHO05D007576 5.2e-74 281.2 158 84.8
Cpa.g.sc10.203 Carica papaya HOM05D005859 ORTHO05D007576 6.7e-74 280.8 161 83.2
Cc09_g05860 Coffea canephora HOM05D005859 ORTHO05D007576 8.8e-74 280.4 156 85.3
CiPaw.07G208600 Carya illinoinensis HOM05D005859 ORTHO05D007576 1.1e-73 280.0 157 84.7
Eucgr.A02021 Eucalyptus grandis HOM05D005859 ORTHO05D007576 1.5e-73 279.6 157 84.1
Nn2g12765 Nelumbo nucifera HOM05D005859 ORTHO05D007576 1.5e-73 279.6 157 82.8
Sopen02g017820 Solanum pennellii HOM05D005859 ORTHO05D007576 1.5e-73 279.6 157 86.0
HPP92_010546 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.5e-73 279.6 157 83.4
Manes.08G049200 Manihot esculenta HOM05D005859 ORTHO05D007576 2.0e-73 279.3 157 84.7
TAR625G0738 Trochodendron aralioides HOM05D005859 ORTHO05D007576 2.0e-73 279.3 157 83.4
Nitab4.5_0006282g0050 Nicotiana tabacum HOM05D005859 ORTHO05D007576 3.3e-73 278.5 157 85.4
Lj2P347T15 Lonicera japonica HOM05D005859 ORTHO05D007576 7.4e-73 277.3 157 85.4
SalBow1G3786 Salvia bowleyana HOM05D005859 ORTHO05D007576 7.4e-73 277.3 157 85.4
Migut.A01131 Erythranthe guttata HOM05D005859 ORTHO05D007576 1.3e-72 276.6 157 82.8
MBI07_g41262_MAGBIO Magnolia biondii HOM05D005859 ORTHO05D007576 1.3e-72 276.6 160 82.5
Nitab4.5_0003379g0070 Nicotiana tabacum HOM05D005859 ORTHO05D007576 1.3e-72 276.6 157 84.1
CSS0002423 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 8.2e-72 273.9 159 82.4
CSS0037116 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 8.2e-72 273.9 159 82.4
Oeu056039.1 Olea europaea HOM05D005859 ORTHO05D007576 8.2e-72 273.9 158 81.6
Carub.0006s2269 Capsella rubella HOM05D005859 ORTHO05D007576 1.1e-71 273.5 158 83.5
AL6G36490 Arabidopsis lyrata HOM05D005859 ORTHO05D007576 1.4e-71 273.1 158 83.5
AT5G24840 Arabidopsis thaliana HOM05D005859 ORTHO05D007576 1.4e-71 273.1 158 84.2
SGA_v2.0_scaffold104G30176 Striga asiatica HOM05D005859 ORTHO05D007576 1.4e-71 273.1 157 82.2
Aa31LG11G4050 Aethionema arabicum HOM05D005859 ORTHO05D007576 1.8e-71 272.7 157 83.4
BolC7t44822H Brassica oleracea HOM05D005859 ORTHO05D008158 3.1e-71 271.9 158 83.5
Sp2g22610 Schrenkiella parvula HOM05D005859 ORTHO05D007576 4.1e-71 271.6 158 83.5
BcaB04g19801 Brassica carinata HOM05D005859 ORTHO05D007576 5.3e-71 271.2 158 82.3
A06p35610 Brassica napus HOM05D005859 ORTHO05D007576 5.3e-71 271.2 158 83.5
C07p42930 Brassica napus HOM05D005859 ORTHO05D008158 5.3e-71 271.2 158 83.5
HPP92_010527 Vanilla planifolia HOM05D005859 ORTHO05D007576 5.3e-71 271.2 154 82.5
Thhalv10004821m.g Eutrema salsugineum HOM05D005859 ORTHO05D007576 7.0e-71 270.8 158 82.3
Zm00001eb208790 Zea mays HOM05D005859 ORTHO05D007576 9.1e-71 270.4 157 82.2
CSS0022235 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 2.0e-70 269.2 159 80.5
CARHR188610 Cardamine hirsuta HOM05D005859 ORTHO05D007576 2.0e-70 269.2 158 82.3
PSO063G7086 Papaver somniferum HOM05D005859 ORTHO05D007576 7.7e-70 267.3 157 81.5
unitig_21.g20313 Utricularia gibba HOM05D005859 ORTHO05D007576 4.2e-68 261.5 158 78.5
BcaC04g23549 Brassica carinata HOM05D005859 ORTHO05D007576 1.2e-67 260.0 159 79.2
SEGI_16955 Sequoiadendron giganteum HOM05D005859 ORTHO05D007576 3.6e-67 258.5 163 74.8
Peaxi162Scf00149g00014 Petunia axillaris HOM05D005859 ORTHO05D007576 5.7e-65 251.1 155 78.7
ATR0697G154 Amborella trichopoda HOM05D005859 ORTHO05D007576 9.7e-65 250.4 159 74.2
Mapoly0026s0057 Marchantia polymorpha HOM05D005859 ORTHO05D007576 2.4e-63 245.7 157 73.9
MD15G1100000 Malus domestica HOM05D005859 ORTHO05D007576 5.9e-62 241.1 157 75.2
Pp3c24_9600 Physcomitrium patens HOM05D005859 ORTHO05D007576 5.9e-62 241.1 157 71.3
SMO358G0125 Selaginella moellendorffii HOM05D005859 ORTHO05D007576 1.5e-60 236.5 157 70.1
CBR_g63067 Chara braunii HOM05D005859 ORTHO05D007576 3.2e-60 235.3 157 70.1
AagrBONN_evm.TU.Sc2ySwM_344.1368 Anthoceros agrestis HOM05D005859 ORTHO05D007576 4.2e-60 235.0 157 70.7
Cre07.g314550 Chlamydomonas reinhardtii HOM05D005859 ORTHO05D007576 2.4e-55 219.2 157 63.1
BolC9t53628H Brassica oleracea HOM05D005859 ORTHO05D007576 5.5e-52 208.0 118 80.5
HanXRQChr14g0440281 Helianthus annuus HOM05D005859 ORTHO05D007576 1.6e-51 206.5 103 96.1
HPP92_010638 Vanilla planifolia HOM05D005859 ORTHO05D007576 2.1e-51 206.1 117 80.3
AUR62018819 Chenopodium quinoa HOM05D005859 ORTHO05D007576 1.4e-50 203.4 157 65.0
CSS0033509 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 5.2e-50 201.4 110 84.5
MCO01G481 Micromonas commoda HOM05D005859 ORTHO05D007576 7.5e-49 197.6 156 59.6
CSS0005155 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 1.3e-48 196.8 160 65.0
GSVIVG01035552001 Vitis vinifera HOM05D005859 ORTHO05D007576 2.2e-48 196.1 152 68.4
PRCOL_00003713 Prasinoderma coloniale HOM05D005859 ORTHO05D007576 3.8e-45 185.3 157 58.6
HPP92_010538 Vanilla planifolia HOM05D005859 ORTHO05D007576 8.6e-45 184.1 103 80.6
HPP92_010585 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.1e-44 183.7 101 87.1
Dinv07265 Davidia involucrata HOM05D005859 ORTHO05D007576 9.5e-44 180.6 98 87.8
CDE05G2856 Ceratophyllum demersum HOM05D005859 ORTHO05D007576 3.6e-43 178.7 97 85.6
Haze_26141 Corylus avellana HOM05D005859 ORTHO05D007576 1.2e-41 173.7 156 49.4
CSS0020153 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 3.7e-40 168.7 96 82.3
CSS0043283 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 5.4e-39 164.9 141 60.3
HPP92_010304 Vanilla planifolia HOM05D005859 ORTHO05D007576 3.5e-38 162.2 116 69.8
CSS0049229 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 4.6e-38 161.8 159 54.1
CSS0012487 Camellia sinensis var. sinensis HOM05D005859 ORTHO05D007576 4.3e-36 155.2 96 76.0
Os06g0236900 Oryza sativa ssp. japonica HOM05D005859 ORTHO05D007576 7.0e-31 137.9 79 78.5
BraA06t26486Z Brassica rapa HOM05D000880 ORTHO05D008158 2.6e-17 92.8 55 87.3
C09p07080 Brassica napus HOM05D000880 ORTHO05D008158 2.2e-16 89.7 56 80.4
HPP92_010586 Vanilla planifolia HOM05D005859 ORTHO05D007576 1.2e-14 84.0 49 75.5
A09p06400 Brassica napus HOM05D005859 ORTHO05D007576 2.3e-13 79.7 48 72.9
ATR1096G015 Amborella trichopoda HOM05D005859 ORTHO05D007576 1.5e-12 77.0 50 66.0
CBR_g38752 Chara braunii HOM05D005695 ORTHO05D007810 9.9e-09 64.3 164 26.8
Cc05_g03930 Coffea canephora HOM05D005695 ORTHO05D007810 5.4e-07 58.5 137 30.7
Mapoly0006s0284 Marchantia polymorpha HOM05D005695 ORTHO05D007810 5.4e-07 58.5 161 24.2
Pp3c18_9830 Physcomitrium patens HOM05D005695 ORTHO05D007810 7.1e-07 58.2 161 26.7
PSO782G5257 Papaver somniferum HOM05D005695 ORTHO05D007810 9.3e-07 57.8 126 29.4
Pp3c19_7240 Physcomitrium patens HOM05D005695 ORTHO05D007810 9.3e-07 57.8 167 25.7
PGR083G0136 Punica granatum HOM05D005695 ORTHO05D007810 1.2e-06 57.4 107 30.8
BcaC04g18770 Brassica carinata HOM05D005695 ORTHO05D007810 2.1e-06 56.6 165 25.5
C09p59500 Brassica napus HOM05D005695 ORTHO05D007810 2.1e-06 56.6 165 25.5
Hma1.2p1_0128F.1_g060080 Hydrangea macrophylla HOM05D005695 ORTHO05D007810 2.1e-06 56.6 137 29.2
A10p21740 Brassica napus HOM05D005695 ORTHO05D007810 2.7e-06 56.2 166 25.3
BraA10t44235Z Brassica rapa HOM05D005695 ORTHO05D007810 2.7e-06 56.2 166 25.3
SMO351G0486 Selaginella moellendorffii HOM05D005695 ORTHO05D007810 3.5e-06 55.8 160 26.2
Actinidia21589 Actinidia chinensis HOM05D005695 ORTHO05D007810 4.6e-06 55.5 127 29.1
BcaB08g36754 Brassica carinata HOM05D005695 ORTHO05D007810 4.6e-06 55.5 110 30.9
BolC9t58788H Brassica oleracea HOM05D005695 ORTHO05D007810 4.6e-06 55.5 109 31.2
MCO05G350 Micromonas commoda HOM05D005695 ORTHO05D007810 4.6e-06 55.5 118 26.3
Sp6g26560 Schrenkiella parvula HOM05D005695 ORTHO05D007810 4.6e-06 55.5 113 31.9
Aa31LG11G11970 Aethionema arabicum HOM05D005695 ORTHO05D007810 6.0e-06 55.1 131 29.8
AagrBONN_evm.TU.Sc2ySwM_117.3790 Anthoceros agrestis HOM05D005695 ORTHO05D007810 7.8e-06 54.7 107 28.0
Thhalv10014195m.g Eutrema salsugineum HOM05D005695 ORTHO05D007810 7.8e-06 54.7 166 25.9


User provided reference genes

Program Settings