Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 3.4e-61 238.4 145 100.0
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 1.3e-57 226.5 141 98.6
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 2.3e-57 225.7 145 95.2
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 9.2e-51 203.8 141 85.8
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.1e-50 202.6 141 85.1
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.7e-49 199.5 141 78.7
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 2.1e-39 166.0 137 78.1
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 4.8e-39 164.9 133 76.7
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 8.1e-39 164.1 137 78.1
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.4e-38 163.3 137 76.6
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 2.4e-38 162.5 134 76.1
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 6.9e-38 161.0 125 61.6
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 9.0e-38 160.6 141 73.8
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 4.5e-37 158.3 137 74.5
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.3e-36 156.8 141 72.3
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 1.7e-36 156.4 141 70.2
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 1.7e-36 156.4 129 55.8
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 3.8e-36 155.2 129 77.5
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 4.9e-36 154.8 138 68.1
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 6.4e-36 154.5 138 72.5
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 6.4e-36 154.5 138 72.5
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 8.4e-36 154.1 132 72.7
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 1.1e-35 153.7 129 77.5
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 1.1e-35 153.7 137 70.8
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 1.9e-35 152.9 129 76.0
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.4e-35 152.5 137 70.8
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 3.2e-35 152.1 129 76.0
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.2e-35 151.8 137 74.5
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 4.2e-35 151.8 137 70.8
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.2e-34 150.2 137 73.0
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 1.2e-34 150.2 141 73.0
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 2.1e-34 149.4 137 70.1
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.1e-34 149.4 137 70.8
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.1e-34 149.4 137 70.8
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 2.7e-34 149.1 132 72.7
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 2.7e-34 149.1 129 72.9
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.5e-34 148.7 137 68.6
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 6.0e-34 147.9 137 73.0
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 1.3e-33 146.7 138 68.8
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 1.8e-33 146.4 88 72.7
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 3.0e-33 145.6 137 70.1
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 3.0e-33 145.6 134 68.7
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 3.0e-33 145.6 137 60.6
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 2.5e-32 142.5 137 70.8
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 3.3e-32 142.1 139 68.3
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 4.3e-32 141.7 137 69.3
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 4.3e-32 141.7 129 53.5
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 1.6e-31 139.8 137 65.0
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 1.6e-31 139.8 138 65.2
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 2.8e-31 139.0 141 68.1
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 2.8e-31 139.0 137 68.6
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 2.8e-31 139.0 141 65.2
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 2.8e-31 139.0 138 64.5
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 3.7e-31 138.7 137 65.7
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 3.7e-31 138.7 139 69.8
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 4.8e-31 138.3 138 68.1
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 4.8e-31 138.3 141 66.7
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 6.2e-31 137.9 138 65.2
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 1.8e-30 136.3 138 65.9
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 3.1e-30 135.6 138 62.3
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 5.3e-30 134.8 141 66.7
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 5.3e-30 134.8 143 65.0
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 6.9e-30 134.4 141 66.0
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 9.0e-30 134.0 127 60.6
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 1.2e-29 133.7 131 69.5
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.5e-29 133.3 141 66.7
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 2.6e-29 132.5 130 62.3
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 2.6e-29 132.5 127 70.1
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 4.5e-29 131.7 138 67.4
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 4.5e-29 131.7 140 60.7
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 4.5e-29 131.7 92 62.0
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 1.3e-28 130.2 129 68.2
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 2.9e-28 129.0 137 54.0
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 4.9e-28 128.3 91 64.8
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 1.1e-27 127.1 137 59.9
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.9e-27 126.3 121 70.2
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 2.1e-26 122.9 137 59.1
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 2.1e-26 122.9 137 59.1
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 2.7e-26 122.5 137 59.9
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 2.7e-26 122.5 137 52.6
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 3.5e-26 122.1 130 58.5
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 3.5e-26 122.1 116 70.7
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 4.6e-26 121.7 137 60.6
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 4.6e-26 121.7 137 59.9
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 6.0e-26 121.3 137 58.4
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.8e-25 119.8 81 59.3
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 5.1e-25 118.2 121 69.4
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 2.5e-24 115.9 137 56.2
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 9.6e-24 114.0 122 67.2
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 2.8e-23 112.5 112 70.5
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 6.2e-23 111.3 142 54.2
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 3.1e-22 109.0 80 52.5
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 6.9e-22 107.8 136 37.5
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.2e-21 107.1 131 57.3
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 2.6e-21 105.9 137 54.7
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 2.6e-21 105.9 137 54.7
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 3.4e-21 105.5 126 57.9
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 4.5e-21 105.1 137 54.0
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 5.8e-21 104.8 107 49.5
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 7.6e-21 104.4 114 56.1
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 2.9e-20 102.4 147 35.4
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 3.8e-20 102.1 114 55.3
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.9e-19 99.8 100 73.0
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.5e-19 99.4 82 51.2
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 2.5e-19 99.4 82 51.2
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 3.2e-19 99.0 137 51.1
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 4.2e-19 98.6 137 51.1
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 9.3e-19 97.4 116 61.2
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 1.2e-18 97.1 128 53.1
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.6e-18 96.7 136 55.9
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 1.0e-17 94.0 116 50.9
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 8.7e-17 90.9 95 58.9
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 8.7e-17 90.9 79 49.4
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 1.9e-16 89.7 132 40.2
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 6.9e-14 81.3 96 42.7
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 6.9e-14 81.3 127 48.8
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.0e-12 77.4 61 55.7
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 5.0e-12 75.1 118 33.9
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 5.0e-12 75.1 118 33.9
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 5.0e-12 75.1 118 33.9
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 5.0e-12 75.1 123 45.5
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 1.1e-11 73.9 62 50.0
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 4.2e-11 72.0 122 30.3
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 4.2e-11 72.0 122 30.3
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 7.2e-11 71.2 118 31.4
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 7.2e-11 71.2 118 31.4
Cre02.g075550 Chlamydomonas reinhardtii HOM05D001969 ORTHO05D009003 2.1e-10 69.7 137 40.9
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 4.6e-10 68.6 100 31.0
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 9.7e-08 60.8 93 46.2
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 1.3e-07 60.5 73 38.4


User provided reference genes

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