Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0273911 Helianthus annuus HOM05D005764 ORTHO05D006600 6.8e-208 728.4 916 100.0
ECA232G3323 Erigeron canadensis HOM05D005764 ORTHO05D006600 2.3e-102 377.9 241 84.2
Lsat_1_v5_gn_4_84661 Lactuca sativa HOM05D005764 ORTHO05D006600 2.9e-81 307.8 229 68.1
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 2.4e-43 181.8 234 46.2
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 1.6e-39 169.1 220 47.7
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 4.6e-39 167.5 225 42.7
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 3.0e-38 164.9 209 45.9
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 5.1e-38 164.1 232 44.8
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 5.7e-37 160.6 232 44.0
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 5.7e-37 160.6 232 44.0
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 5.7e-37 160.6 227 42.7
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 8.2e-36 156.8 228 40.8
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.4e-35 155.2 219 43.8
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 3.1e-35 154.8 235 42.1
HanXRQChr16g0498891 Helianthus annuus HOM05D005764 ORTHO05D006600 9.1e-35 153.3 206 44.2
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 2.0e-34 152.1 202 43.1
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 1.1e-32 146.4 200 43.0
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 7.2e-32 143.7 197 42.6
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 2.1e-31 142.1 174 45.4
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 6.1e-31 140.6 210 43.8
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 1.8e-30 139.0 226 40.7
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 2.3e-30 138.7 200 42.5
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 3.0e-30 138.3 225 38.2
Duzib205G1181 Durio zibethinus HOM05D005764 ORTHO05D006600 3.9e-30 137.9 225 40.0
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 6.7e-30 137.1 200 40.0
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 8.8e-30 136.7 225 39.6
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 8.8e-30 136.7 218 39.0
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 1.5e-29 136.0 202 40.1
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 3.3e-29 134.8 228 37.3
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 3.3e-29 134.8 202 40.6
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 5.7e-29 134.0 243 37.0
vmacro19171 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 5.7e-29 134.0 194 46.9
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 5.7e-29 134.0 183 42.1
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 7.4e-29 133.7 232 37.9
Gohir.D03G110000 Gossypium hirsutum HOM05D005764 ORTHO05D006600 9.7e-29 133.3 228 36.8
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 2.2e-28 132.1 201 41.8
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 2.8e-28 131.7 227 37.4
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 1.1e-27 129.8 204 40.7
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 1.1e-27 129.8 222 37.4
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 1.1e-27 129.8 234 39.3
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 1.4e-27 129.4 207 40.1
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 3.1e-27 128.3 197 37.1
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 3.1e-27 128.3 243 37.0
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 4.1e-27 127.9 225 38.7
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 6.9e-27 127.1 226 38.5
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 6.9e-27 127.1 198 41.9
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 1.5e-26 125.9 204 40.2
THA.LOC104804672 Tarenaya hassleriana HOM05D005764 ORTHO05D006600 2.0e-26 125.6 210 40.0
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 2.6e-26 125.2 222 36.5
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 4.5e-26 124.4 203 37.4
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 5.9e-26 124.0 220 38.2
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 7.7e-26 123.6 235 37.4
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 1.0e-25 123.2 209 39.2
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.3e-25 122.9 197 36.5
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 5.0e-25 120.9 209 38.8
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 6.5e-25 120.6 183 41.0
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 6.5e-25 120.6 207 40.1
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 8.5e-25 120.2 240 37.1
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 8.5e-25 120.2 211 37.4
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.1e-24 119.8 230 33.9
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 1.4e-24 119.4 233 35.6
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 3.2e-24 118.2 225 35.6
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 3.2e-24 118.2 206 38.8
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 7.2e-24 117.1 199 40.2
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 2.1e-23 115.5 231 35.1
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 2.7e-23 115.2 204 36.3
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 4.7e-23 114.4 235 35.3
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 1.4e-22 112.8 229 36.7
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 1.4e-22 112.8 229 36.7
QL04p006829 Quercus lobata HOM05D000056 ORTHO05D000019 1.8e-22 112.5 178 41.0
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 3.9e-22 111.3 182 39.6
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 5.2e-22 110.9 183 38.8
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 5.2e-22 110.9 227 35.7
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 1.5e-21 109.4 190 38.9
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 1.5e-21 109.4 183 38.8
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 2.0e-21 109.0 233 37.8
Sp2g25170 Schrenkiella parvula HOM05D005764 ORTHO05D006600 3.3e-21 108.2 206 36.4
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 9.7e-21 106.7 216 36.1
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 1.3e-20 106.3 189 39.7
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 1.3e-20 106.3 231 35.9
Sopen07g023950 Solanum pennellii HOM05D005764 ORTHO05D006600 2.2e-20 105.5 231 34.2
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 2.8e-20 105.1 231 33.8
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 3.7e-20 104.8 222 38.3
A06p28690 Brassica napus HOM05D005764 ORTHO05D006600 3.7e-20 104.8 192 39.1
BraA06t25809Z Brassica rapa HOM05D005764 ORTHO05D006600 3.7e-20 104.8 192 39.1
BolC3t18765H Brassica oleracea HOM05D005764 ORTHO05D006600 4.8e-20 104.4 193 37.8
C03p65110 Brassica napus HOM05D005764 ORTHO05D006600 6.3e-20 104.0 193 37.8
AT5G61990 Arabidopsis thaliana HOM05D005764 ORTHO05D006600 9.1e-19 100.1 229 34.9
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 1.2e-18 99.8 208 36.1
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 5.9e-18 97.4 203 35.5
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 5.9e-18 97.4 177 37.3
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 2.9e-17 95.1 237 32.9
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 5.0e-17 94.4 120 42.5
Solyc07g045400.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 1.5e-16 92.8 199 34.7
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 7.2e-16 90.5 235 30.6
ECA232G2490 Erigeron canadensis HOM05D005764 ORTHO05D006600 6.1e-15 87.4 194 32.0
RcHm_v2.0_Chr2g0162681 Rosa chinensis HOM05D005764 ORTHO05D006600 1.8e-14 85.9 130 45.4
CDE05G2510 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 3.0e-14 85.1 206 29.6
Atru.chr1.4150 Acer truncatum HOM05D005764 ORTHO05D006600 2.6e-13 82.0 161 39.8
ECA232G4944 Erigeron canadensis HOM05D000422 ORTHO05D006600 1.3e-12 79.7 97 39.2
ECA248G1009 Erigeron canadensis HOM05D005764 ORTHO05D006600 3.7e-12 78.2 117 36.8
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 4.8e-12 77.8 204 28.9
MELO3C011746.2 Cucumis melo HOM05D005764 ORTHO05D006600 6.3e-12 77.4 117 39.3
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 4.1e-11 74.7 103 40.8
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 4.5e-10 71.2 203 31.5
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 5.9e-10 70.9 108 35.2
CDE05G0348 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 7.7e-10 70.5 183 31.7
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 1.0e-09 70.1 237 24.5
HanXRQChr03g0075031 Helianthus annuus HOM05D005764 ORTHO05D006600 1.3e-09 69.7 198 30.3
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 1.7e-09 69.3 222 23.4
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 2.2e-09 68.9 170 27.1
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 3.8e-09 68.2 237 25.3
Thecc.05G053600 Theobroma cacao HOM05D000855 ORTHO05D008530 3.8e-09 68.2 170 27.6
Sc17g0007100 Simmondsia chinensis HOM05D007956 ORTHO05D010152 5.0e-09 67.8 217 27.2
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 5.0e-09 67.8 222 24.8
A01p07620 Brassica napus HOM05D015591 ORTHO05D000001 6.5e-09 67.4 209 24.4
BraA01t00705Z Brassica rapa HOM05D015591 ORTHO05D000001 6.5e-09 67.4 209 24.4
Atru.chr6.3407 Acer truncatum HOM05D005764 ORTHO05D006600 8.5e-09 67.0 211 32.2
Atru.chr6.3419 Acer truncatum HOM05D005764 ORTHO05D006600 8.5e-09 67.0 212 32.1
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 8.5e-09 67.0 170 27.1
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 8.5e-09 67.0 170 27.1
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 1.1e-08 66.6 170 26.5
Ciclev10030383m.g Citrus clementina HOM05D000855 ORTHO05D000003 1.1e-08 66.6 235 25.5
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 1.1e-08 66.6 237 24.9
Ciclev10014235m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.5e-08 66.2 139 35.3
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 1.5e-08 66.2 170 25.9
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 1.5e-08 66.2 136 30.1
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 1.9e-08 65.9 170 25.3
CSS0013853 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 2.5e-08 65.5 241 24.1
CSS0023086 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 2.5e-08 65.5 241 24.1
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 2.5e-08 65.5 170 26.5
C01p08300 Brassica napus HOM05D015591 ORTHO05D000001 3.2e-08 65.1 209 24.9
Actinidia09797 Actinidia chinensis HOM05D005764 ORTHO05D006600 4.2e-08 64.7 231 22.9
BcaC09g51856 Brassica carinata HOM05D015591 ORTHO05D000001 4.2e-08 64.7 209 24.9
BolC1t00816H Brassica oleracea HOM05D015591 ORTHO05D000001 4.2e-08 64.7 209 24.9
DCAR_015277 Daucus carota HOM05D005287 ORTHO05D006893 5.5e-08 64.3 240 22.5
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 5.5e-08 64.3 223 26.0
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 7.2e-08 63.9 170 25.9
CiPaw.02G077000 Carya illinoinensis HOM05D000855 ORTHO05D008530 9.4e-08 63.5 170 25.9
Peaxi162Scf00314g00530 Petunia axillaris HOM05D005764 ORTHO05D006600 1.2e-07 63.2 60 48.3
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 1.2e-07 63.2 171 27.5
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 1.6e-07 62.8 170 25.9
Prupe.7G151800 Prunus persica HOM05D000891 ORTHO05D000761 1.6e-07 62.8 221 22.2
Ciclev10011148m.g Citrus clementina HOM05D000855 ORTHO05D008530 2.1e-07 62.4 170 25.9
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 2.1e-07 62.4 170 25.3
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 2.7e-07 62.0 136 27.2
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 3.6e-07 61.6 170 25.9
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 3.6e-07 61.6 170 24.1
Sp7g28540 Schrenkiella parvula HOM05D015591 ORTHO05D000001 3.6e-07 61.6 221 22.2
SEGI_02979 Sequoiadendron giganteum HOM05D007551 ORTHO05D006600 3.6e-07 61.6 201 26.9
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 4.7e-07 61.2 170 24.1
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 4.7e-07 61.2 186 25.3
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 4.7e-07 61.2 170 26.5
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 4.7e-07 61.2 137 27.0
AUR62040505 Chenopodium quinoa HOM05D000855 ORTHO05D008530 6.1e-07 60.8 170 25.9
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 8.0e-07 60.5 170 25.9
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 8.0e-07 60.5 170 25.9
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 8.0e-07 60.5 170 25.9
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.0e-06 60.1 233 26.6
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 1.0e-06 60.1 195 26.2
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 1.4e-06 59.7 170 25.3
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 1.4e-06 59.7 114 29.8
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.4e-06 59.7 195 25.6
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 1.4e-06 59.7 192 26.0
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 2.3e-06 58.9 235 23.8
RcHm_v2.0_Chr1g0325241 Rosa chinensis HOM05D005764 ORTHO05D006600 2.3e-06 58.9 79 49.4
AUR62025156 Chenopodium quinoa HOM05D006156 ORTHO05D007699 3.0e-06 58.5 165 24.8
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 3.0e-06 58.5 171 25.7
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.0e-06 58.2 171 25.7
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 4.0e-06 58.2 171 25.7
Ca_25358_v3 Cicer arietinum L. HOM05D004271 ORTHO05D006011 5.2e-06 57.8 216 23.1
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 5.2e-06 57.8 199 27.6
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 5.2e-06 57.8 173 22.5
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 6.8e-06 57.4 119 26.9
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 8.8e-06 57.0 136 25.7
Lj4g0012938 Lotus japonicus HOM05D002825 ORTHO05D003824 8.8e-06 57.0 118 30.5


User provided reference genes

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