Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 0.0e+00 1092.0 581 100.0
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 8.9e-262 906.7 593 82.5
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 4.6e-250 867.8 612 75.7
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-241 838.6 605 71.9
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 1.9e-195 686.4 511 67.1
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 4.3e-192 675.2 616 58.6
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 6.9e-190 667.9 593 59.7
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 3.8e-188 662.1 615 57.7
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 3.8e-188 662.1 614 57.8
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 1.0e-185 654.1 617 56.6
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 3.1e-182 642.5 618 54.7
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 1.7e-180 636.7 626 55.3
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 1.4e-177 627.1 608 55.9
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 8.8e-177 624.4 615 54.8
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 1.5e-176 623.6 608 55.4
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 1.3e-175 620.5 611 55.0
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.4e-174 617.1 531 60.3
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 2.4e-174 616.3 582 57.0
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 3.1e-174 615.9 611 56.3
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 1.1e-171 607.4 617 54.3
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.5e-171 607.1 620 54.5
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 9.4e-171 604.4 623 55.1
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 1.2e-170 604.0 586 55.8
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 2.7e-170 602.8 617 52.8
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 1.4e-169 600.5 586 55.8
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 6.7e-169 598.2 586 56.3
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 8.2e-167 591.3 612 51.5
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 3.1e-166 589.3 530 56.4
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.7e-165 586.3 618 52.1
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 2.7e-165 586.3 616 51.6
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 4.5e-165 585.5 618 52.1
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 4.5e-165 585.5 577 56.0
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 2.9e-164 582.8 618 51.8
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 3.2e-163 579.3 674 48.5
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 7.2e-163 578.2 599 53.1
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 1.6e-162 577.0 618 52.6
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 2.7e-162 576.2 634 51.7
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 3.6e-162 575.9 604 52.6
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 8.0e-162 574.7 532 57.3
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.4e-161 573.9 532 57.0
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 2.3e-161 573.2 633 50.6
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 6.8e-161 571.6 532 56.8
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 1.3e-159 567.4 606 51.2
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 1.3e-159 567.4 603 50.6
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 4.1e-158 562.4 618 51.0
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 5.4e-158 562.0 533 55.3
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 9.1e-158 561.2 604 51.0
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.0e-157 560.1 530 56.2
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.0e-156 557.8 529 55.6
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 1.0e-156 557.8 617 48.5
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 2.3e-156 556.6 534 55.8
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 2.3e-156 556.6 529 55.0
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 2.9e-156 556.2 598 56.5
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 1.9e-155 553.5 529 54.8
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 8.0e-154 548.1 614 49.3
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 5.2e-153 545.4 630 49.2
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 7.5e-152 541.6 628 50.3
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 1.4e-150 537.3 511 56.4
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 2.0e-149 533.5 529 52.9
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 1.7e-148 530.4 698 44.3
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 3.8e-148 529.3 676 45.3
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 6.6e-148 528.5 633 47.7
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 8.6e-148 528.1 614 50.2
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 3.3e-147 526.2 705 43.3
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 7.3e-147 525.0 583 50.1
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 1.6e-146 523.9 711 43.2
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 1.6e-146 523.9 528 54.0
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 1.4e-145 520.8 595 48.7
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 3.4e-144 516.2 455 58.7
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 1.7e-143 513.8 583 51.1
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 3.7e-143 512.7 537 50.7
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 2.4e-142 510.0 616 48.2
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 1.6e-141 507.3 597 51.4
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 2.0e-141 506.9 612 47.9
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 4.6e-141 505.8 610 49.7
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 7.8e-141 505.0 597 49.6
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 1.0e-140 504.6 689 42.7
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.3e-140 503.4 599 47.6
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 3.9e-140 502.7 598 48.5
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 8.6e-140 501.5 611 47.1
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 1.9e-139 500.4 581 48.9
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 2.8e-138 496.5 575 48.3
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 6.2e-138 495.4 612 47.9
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 8.9e-137 491.5 600 47.7
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 1.5e-136 490.7 617 46.7
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 2.6e-136 490.0 612 47.2
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.6e-136 490.0 602 48.5
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 5.8e-136 488.8 597 48.4
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 2.2e-135 486.9 539 49.4
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 3.7e-135 486.1 625 45.6
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.7e-135 486.1 621 45.9
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 6.4e-135 485.3 595 47.2
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 7.0e-134 481.9 621 45.6
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.1e-133 480.3 621 45.4
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.7e-133 479.9 596 46.6
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 2.7e-133 479.9 596 46.6
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 1.0e-132 478.0 600 47.2
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.0e-132 478.0 515 55.0
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 5.1e-132 475.7 595 46.2
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 6.6e-132 475.3 640 44.7
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 8.6e-132 474.9 632 44.9
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 8.6e-132 474.9 590 47.3
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.9e-131 473.8 591 46.7
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 1.9e-131 473.8 597 47.9
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.5e-131 473.4 561 49.0
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 2.5e-131 473.4 602 44.9
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 1.6e-130 470.7 602 47.7
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 1.6e-130 470.7 588 47.3
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 3.6e-130 469.5 543 46.8
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 2.3e-129 466.8 504 49.8
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 4.0e-129 466.1 602 47.5
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 4.0e-129 466.1 607 47.9
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 5.2e-129 465.7 540 48.1
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 3.4e-128 463.0 607 47.8
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 4.4e-128 462.6 534 49.8
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-126 458.0 596 47.5
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 6.0e-125 452.2 617 42.8
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 7.8e-125 451.8 614 45.8
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 2.3e-124 450.3 615 44.9
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 4.7e-122 442.6 501 49.3
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 8.4e-119 431.8 550 42.9
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 5.4e-118 429.1 604 45.7
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 6.0e-117 425.6 599 45.4
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.1e-115 421.4 591 43.8
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 1.6e-114 417.5 543 47.0
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.6e-114 416.4 594 42.1
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 5.4e-110 402.5 537 46.0
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 2.7e-109 400.2 564 42.7
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 3.5e-109 399.8 512 44.7
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 3.0e-108 396.7 452 49.3
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 5.6e-107 392.5 590 42.2
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.6e-106 391.0 347 58.8
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 2.1e-106 390.6 533 44.1
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 3.1e-105 386.7 600 41.0
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 1.2e-104 384.8 569 42.9
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 1.9e-102 377.5 607 41.2
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 5.1e-100 369.4 610 43.0
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 4.8e-98 362.8 524 42.4
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 3.4e-96 356.7 559 38.6
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 5.8e-96 355.9 564 39.4
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 5.8e-96 355.9 564 39.4
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 9.3e-94 348.6 303 59.7
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 1.7e-87 327.8 326 55.5
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 2.5e-86 323.9 567 40.9
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 5.5e-86 322.8 400 45.2
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 9.7e-83 312.0 422 43.6
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 4.1e-81 306.6 545 35.8
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 3.4e-80 303.5 352 49.1
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 1.1e-73 282.0 432 42.8
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 1.5e-72 278.1 253 57.7
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 4.5e-72 276.6 419 39.1
Actinidia20762 Actinidia chinensis HOM05D003539 ORTHO05D004111 6.1e-69 266.2 291 51.5
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 3.3e-59 233.8 168 67.3
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 5.7e-59 233.0 341 41.1
DCAR_007550 Daucus carota HOM05D003539 ORTHO05D004111 3.1e-57 227.3 257 52.1
SalBow7G0297 Salvia bowleyana HOM05D003539 ORTHO05D004111 1.4e-52 211.8 258 45.7
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 2.6e-51 207.6 172 61.0
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 7.5e-51 206.1 320 38.1
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 9.1e-49 199.1 161 60.9
BolC4t27866H Brassica oleracea HOM05D003539 ORTHO05D004111 1.2e-48 198.7 244 53.3
Cre03.g207950 Chlamydomonas reinhardtii HOM05D003539 ORTHO05D004111 1.0e-47 195.7 635 25.8
BcaC06g35980 Brassica carinata HOM05D003539 ORTHO05D004111 6.5e-47 193.0 255 49.0
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 5.5e-46 189.9 156 60.9
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 5.9e-40 169.9 299 35.5
HanXRQChr05g0145981 Helianthus annuus HOM05D003539 ORTHO05D004111 1.7e-39 168.3 136 68.4
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 2.9e-39 167.5 200 47.5
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 1.6e-32 145.2 343 29.7
PRCOL_00004831 Prasinoderma coloniale HOM05D003539 ORTHO05D004111 3.5e-32 144.1 548 25.2
EL10Ac6g14558 Beta vulgaris HOM05D003539 ORTHO05D004111 4.3e-30 137.1 104 62.5
Cfa022324 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.1e-29 134.8 478 27.8
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 3.6e-29 134.0 195 39.0
arahy.Tifrunner.gnm1.ann1.PJLZ8M Arachis hypogaea HOM05D003539 ORTHO05D004111 1.0e-23 115.9 125 51.2
CBR_g23267 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-23 115.5 178 36.5
MCO15G598 Micromonas commoda HOM05D003539 ORTHO05D004111 1.5e-22 112.1 598 22.9
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.7e-21 107.1 117 52.1
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 2.7e-16 91.3 179 33.5
Cpa.g.sc7.213 Carica papaya HOM05D003539 ORTHO05D004111 1.1e-14 85.9 68 52.9
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 7.3e-14 83.2 177 37.3
C03p59690 Brassica napus HOM05D003539 ORTHO05D004111 4.0e-12 77.4 69 52.2
BolC3t18231H Brassica oleracea HOM05D003539 ORTHO05D004111 4.0e-12 77.4 69 52.2
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 4.9e-10 70.5 80 45.0
Medtr4g117730 Medicago truncatula HOM05D003539 ORTHO05D004111 1.7e-07 62.0 68 48.5
Psat0s4462g0080 Pisum sativum HOM05D003539 ORTHO05D004111 1.5e-06 58.9 68 48.5
RcHm_v2.0_Chr2g0096831 Rosa chinensis HOM05D003539 ORTHO05D004111 5.6e-06 57.0 101 34.7


User provided reference genes

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