Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 2.9e-246 854.7 425 100.0
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 9.8e-218 760.0 427 85.9
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 3.1e-195 685.3 426 75.8
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 8.9e-195 683.7 424 75.9
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.5e-194 682.9 426 76.1
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.4e-194 681.8 412 77.9
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 7.6e-194 680.6 426 75.1
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.3e-193 679.9 426 75.8
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 2.9e-193 678.7 426 75.4
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 6.4e-193 677.6 426 75.8
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 1.2e-191 673.3 412 75.5
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 3.5e-191 671.8 430 74.9
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 6.0e-191 671.0 426 74.9
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 1.7e-190 669.5 426 74.4
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 2.3e-190 669.1 426 73.9
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 2.5e-189 665.6 427 75.2
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 2.5e-189 665.6 426 75.1
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 4.3e-189 664.8 427 73.8
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 2.8e-188 662.1 427 73.5
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.6e-188 661.8 412 75.7
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 1.1e-187 660.2 427 73.8
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 1.4e-187 659.8 426 76.5
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 1.8e-187 659.4 414 74.6
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.8e-187 659.4 407 76.2
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 2.6e-186 655.6 412 74.3
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 2.6e-186 655.6 412 74.0
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 4.4e-186 654.8 414 74.2
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 7.6e-186 654.1 421 72.7
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 9.9e-186 653.7 412 75.5
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.7e-185 652.9 410 74.6
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 8.4e-185 650.6 412 74.3
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 1.9e-184 649.4 412 73.8
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 9.3e-184 647.1 412 73.3
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 3.5e-183 645.2 412 72.3
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.3e-182 643.3 447 68.9
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 2.3e-182 642.5 412 71.8
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 3.6e-180 635.2 392 76.0
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 1.1e-179 633.6 409 71.9
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 2.4e-179 632.5 427 69.6
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 4.0e-179 631.7 411 71.3
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 4.0e-179 631.7 413 71.7
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 7.6e-178 627.5 426 70.7
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.9e-177 625.5 428 68.2
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 3.8e-177 625.2 428 68.2
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 6.4e-177 624.4 428 68.2
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 6.4e-177 624.4 413 70.5
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.9e-176 622.9 434 69.8
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 7.1e-176 620.9 412 69.7
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.6e-175 619.8 394 74.1
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 2.1e-175 619.4 412 70.9
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 1.8e-174 616.3 412 69.7
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 3.9e-174 615.1 464 64.2
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 8.7e-174 614.0 412 69.4
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.5e-173 613.2 412 68.7
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 5.6e-173 611.3 449 67.0
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 2.1e-172 609.4 412 70.9
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 3.1e-171 605.5 448 66.5
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 9.9e-170 600.5 395 71.9
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.7e-169 599.7 411 68.4
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 4.9e-169 598.2 412 68.4
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 6.4e-169 597.8 376 75.3
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 1.1e-168 597.0 413 67.6
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.9e-168 596.3 432 64.8
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 3.2e-168 595.5 412 66.3
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 1.2e-167 593.6 413 66.8
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 7.9e-167 590.9 416 67.5
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 1.8e-166 589.7 412 66.7
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 2.3e-166 589.3 413 68.5
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 4.8e-164 581.6 452 63.7
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.1e-163 580.5 415 67.2
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 3.1e-163 578.9 415 67.0
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 6.9e-163 577.8 414 67.4
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 6.9e-163 577.8 414 67.4
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 6.9e-163 577.8 414 67.6
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 9.0e-163 577.4 394 68.3
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 5.8e-162 574.7 394 65.7
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 8.4e-161 570.9 413 67.3
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 1.4e-160 570.1 410 65.9
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 2.5e-160 569.3 354 76.0
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 2.3e-158 562.8 413 65.1
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 5.1e-158 561.6 411 65.2
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 1.1e-157 560.5 413 65.4
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 2.5e-157 559.3 418 65.3
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 4.3e-157 558.5 413 65.6
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.4e-155 552.7 483 57.1
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 1.0e-153 547.4 413 64.6
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 8.5e-153 544.3 412 63.8
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 1.6e-151 540.0 412 60.9
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 6.1e-151 538.1 440 63.6
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 5.7e-149 531.6 381 67.2
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 1.3e-145 520.4 331 73.1
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 1.0e-142 510.8 384 65.6
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 3.3e-141 505.8 424 56.6
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 1.3e-140 503.8 412 60.4
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 6.3e-140 501.5 431 60.1
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 1.9e-136 490.0 356 64.6
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.5e-133 480.3 421 60.1
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.4e-131 473.8 426 57.7
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 4.1e-131 472.2 412 56.1
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 1.2e-125 454.1 401 57.1
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 5.7e-125 451.8 395 58.2
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 3.6e-119 432.6 302 65.6
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 9.1e-115 417.9 415 49.6
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 5.9e-114 415.2 307 62.9
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 9.8e-109 397.9 277 69.7
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 1.7e-108 397.1 276 69.6
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 2.2e-108 396.7 276 69.9
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 3.8e-105 386.0 421 48.0
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 6.1e-103 378.6 410 51.0
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 8.9e-102 374.8 421 48.9
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 1.4e-99 367.5 444 47.1
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.0e-97 361.3 412 48.3
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 1.0e-97 361.3 273 64.5
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.2e-90 337.8 416 44.0
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 1.1e-86 324.7 269 57.2
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 4.4e-85 319.3 622 34.7
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.1e-80 304.7 263 58.2
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 2.9e-76 290.0 189 69.3
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 2.8e-71 273.5 678 30.2
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 1.5e-53 214.5 530 30.8
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 2.0e-53 214.2 316 42.4
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 1.8e-49 201.1 145 65.5
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.1e-42 177.6 149 62.4
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 1.1e-40 171.8 122 64.8
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 3.1e-38 163.7 107 70.1
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 6.7e-33 146.0 288 33.3
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 2.0e-32 144.4 288 33.3
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 4.3e-32 143.3 143 49.7
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 5.3e-30 136.3 90 71.1
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 7.7e-29 132.5 88 70.5
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 3.8e-20 103.6 85 55.3
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 7.2e-19 99.4 68 66.2
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.7e-18 97.4 58 74.1
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 4.7e-18 96.7 70 65.7
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 7.0e-14 82.8 55 74.5
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.5e-11 75.1 56 53.6
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 2.3e-09 67.8 154 31.8
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.3e-09 67.8 54 57.4
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 7.5e-08 62.8 42 64.3


User provided reference genes

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