Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0265871 Helianthus annuus HOM05D002258 ORTHO05D221382 3.7e-39 164.5 86 100.0
HanXRQChr08g0214081 Helianthus annuus HOM05D002258 ORTHO05D002539 2.3e-09 65.5 43 86.0
PGR010G0003 Punica granatum HOM05D002258 ORTHO05D002539 2.0e-08 62.4 44 79.5
PGR119G1176 Punica granatum HOM05D002258 ORTHO05D002539 2.0e-08 62.4 44 79.5
Lsat_1_v5_gn_5_172701 Lactuca sativa HOM05D002258 ORTHO05D002539 4.4e-08 61.2 43 79.1
Thhalv10014632m.g Eutrema salsugineum HOM05D002258 ORTHO05D002539 9.8e-08 60.1 48 68.8
BcaB08g36195 Brassica carinata HOM05D000083 ORTHO05D000196 1.3e-07 59.7 47 70.2
Thhalv10008685m.g Eutrema salsugineum HOM05D002258 ORTHO05D002539 2.2e-07 58.9 49 71.4
Solyc06g082120.4 Solanum lycopersicum HOM05D002258 ORTHO05D002539 2.8e-07 58.5 59 61.0
Cpa.g.sc2.431 Carica papaya HOM05D002258 ORTHO05D002539 3.7e-07 58.2 60 60.0
Cc01_g14460 Coffea canephora HOM05D002258 ORTHO05D002539 3.7e-07 58.2 48 68.8
ECA248G1236 Erigeron canadensis HOM05D002258 ORTHO05D002539 3.7e-07 58.2 59 59.3
Eucgr.B02236 Eucalyptus grandis HOM05D002258 ORTHO05D002539 3.7e-07 58.2 59 61.0
AUR62025120 Chenopodium quinoa HOM05D002258 ORTHO05D002539 4.9e-07 57.8 58 53.4
AL1G17270 Arabidopsis lyrata HOM05D002258 ORTHO05D002539 6.3e-07 57.4 49 69.4
AT1G07140 Arabidopsis thaliana HOM05D002258 ORTHO05D002539 6.3e-07 57.4 49 69.4
BcaB03g13403 Brassica carinata HOM05D002258 ORTHO05D002539 6.3e-07 57.4 60 56.7
BcaC07g42024 Brassica carinata HOM05D002258 ORTHO05D002539 6.3e-07 57.4 60 56.7
BcaC07g42447 Brassica carinata HOM05D002258 ORTHO05D002539 6.3e-07 57.4 60 56.7
C08p02930 Brassica napus HOM05D002258 ORTHO05D002539 6.3e-07 57.4 60 56.7
BolC8t47092H Brassica oleracea HOM05D002258 ORTHO05D002539 6.3e-07 57.4 60 56.7
Carub.0001s0643 Capsella rubella HOM05D002258 ORTHO05D002539 6.3e-07 57.4 49 69.4
Ciclev10029223m.g Citrus clementina HOM05D002258 ORTHO05D002539 8.3e-07 57.0 42 78.6
AL8G34830 Arabidopsis lyrata HOM05D002258 ORTHO05D002539 1.1e-06 56.6 43 74.4
AUR62037172 Chenopodium quinoa HOM05D002258 ORTHO05D002539 1.1e-06 56.6 58 51.7
Lj2C1085T7 Lonicera japonica HOM05D002258 ORTHO05D002539 1.1e-06 56.6 58 56.9
Peaxi162Scf00540g00126 Petunia axillaris HOM05D002258 ORTHO05D002539 1.1e-06 56.6 45 75.6
Potri.009G073400 Populus trichocarpa HOM05D002258 ORTHO05D002539 1.1e-06 56.6 49 69.4
Sp1g05900 Schrenkiella parvula HOM05D002258 ORTHO05D002539 1.1e-06 56.6 49 69.4
TAR369G0550 Trochodendron aralioides HOM05D002258 ORTHO05D002539 1.1e-06 56.6 58 55.2
A09p66600 Brassica napus HOM05D003314 ORTHO05D004164 1.4e-06 56.2 60 55.0
Carub.0008s1921 Capsella rubella HOM05D002258 ORTHO05D002539 1.4e-06 56.2 43 74.4
Eucgr.J01894 Eucalyptus grandis HOM05D002258 ORTHO05D002539 1.4e-06 56.2 44 77.3
FAN16G3710 Fragaria x ananassa HOM05D002258 ORTHO05D002539 1.8e-06 55.8 43 72.1
Lj1A131T59 Lonicera japonica HOM05D002258 ORTHO05D002539 1.8e-06 55.8 55 58.2
Lj1C133T4 Lonicera japonica HOM05D002258 ORTHO05D002539 1.8e-06 55.8 55 58.2
PGR102G1166 Punica granatum HOM05D002258 ORTHO05D002539 1.8e-06 55.8 44 77.3
PGSC0003DMG400030368 Solanum tuberosum HOM05D002258 ORTHO05D002539 1.8e-06 55.8 60 56.7
TAR623G0441 Trochodendron aralioides HOM05D002258 ORTHO05D002539 1.8e-06 55.8 60 51.7
BcaC05g24679 Brassica carinata HOM05D002258 ORTHO05D002539 2.4e-06 55.5 54 59.3
A08p35740 Brassica napus HOM05D002258 ORTHO05D002539 2.4e-06 55.5 54 59.3
C09p50610 Brassica napus HOM05D002258 ORTHO05D042886 2.4e-06 55.5 44 70.5
BolC9t57915H Brassica oleracea HOM05D002258 ORTHO05D042886 2.4e-06 55.5 44 70.5
BraA08t35481Z Brassica rapa HOM05D002258 ORTHO05D002539 2.4e-06 55.5 54 59.3
CARHR123360 Cardamine hirsuta HOM05D002258 ORTHO05D002539 2.4e-06 55.5 48 68.8
Dinv09640 Davidia involucrata HOM05D002258 ORTHO05D002539 2.4e-06 55.5 59 57.6
Gohir.A05G107400 Gossypium hirsutum HOM05D002258 ORTHO05D002539 2.4e-06 55.5 60 56.7
Lsat_1_v5_gn_8_70741 Lactuca sativa HOM05D002258 ORTHO05D002539 2.4e-06 55.5 47 68.1
Lalb_Chr01g0009821 Lupinus albus HOM05D002258 ORTHO05D002539 2.4e-06 55.5 45 75.6
Sabra16G0172700 Salix brachista HOM05D002258 ORTHO05D002539 2.4e-06 55.5 49 67.3
Zm00001eb013490 Zea mays HOM05D002258 ORTHO05D002539 2.4e-06 55.5 55 58.2
Actinidia23221 Actinidia chinensis HOM05D002258 ORTHO05D002539 3.1e-06 55.1 48 66.7
BcaB01g04134 Brassica carinata HOM05D002258 ORTHO05D002539 3.1e-06 55.1 45 68.9
BcaC01g06032 Brassica carinata HOM05D002258 ORTHO05D002539 3.1e-06 55.1 45 68.9
C03p19720 Brassica napus HOM05D002258 ORTHO05D002539 3.1e-06 55.1 45 68.9
BolC3t14351H Brassica oleracea HOM05D002258 ORTHO05D002539 3.1e-06 55.1 45 68.9
Duzib168G0033 Durio zibethinus HOM05D002258 ORTHO05D002539 3.1e-06 55.1 50 66.0
Potri.016G119800 Populus trichocarpa HOM05D002258 ORTHO05D002539 3.1e-06 55.1 62 58.1
Sabra09G0055500 Salix brachista HOM05D002258 ORTHO05D002539 3.1e-06 55.1 49 67.3
TAR633G2642 Trochodendron aralioides HOM05D002258 ORTHO05D002539 3.1e-06 55.1 58 53.4
Aa31LG1G6370 Aethionema arabicum HOM05D002258 ORTHO05D002539 4.1e-06 54.7 48 68.8
Aa31LG5G6640 Aethionema arabicum HOM05D002258 ORTHO05D002539 4.1e-06 54.7 45 73.3
AT5G58590 Arabidopsis thaliana HOM05D002258 ORTHO05D002539 4.1e-06 54.7 58 53.4
arahy.Tifrunner.gnm1.ann1.MZRF0M Arachis hypogaea HOM05D002258 ORTHO05D002539 4.1e-06 54.7 48 68.8
arahy.Tifrunner.gnm1.ann1.SW24RX Arachis hypogaea HOM05D002258 ORTHO05D002539 4.1e-06 54.7 48 68.8
A10p05660 Brassica napus HOM05D002258 ORTHO05D002539 4.1e-06 54.7 54 55.6
Ca_04668_v3 Cicer arietinum L. HOM05D002258 ORTHO05D002539 4.1e-06 54.7 57 54.4
ClCG03G000600 Citrullus lanatus HOM05D002258 ORTHO05D002539 4.1e-06 54.7 47 66.0
COL.COLO4_03382 Corchorus olitorius HOM05D002258 ORTHO05D002539 4.1e-06 54.7 59 54.2
MELO3C020534.2 Cucumis melo HOM05D002258 ORTHO05D002539 4.1e-06 54.7 47 68.1
CsaV3_1G036350 Cucumis sativus L. HOM05D002258 ORTHO05D002539 4.1e-06 54.7 47 68.1
Thhalv10017072m.g Eutrema salsugineum HOM05D002258 ORTHO05D002539 4.1e-06 54.7 48 68.8
Gohir.A08G201300 Gossypium hirsutum HOM05D002258 ORTHO05D002539 4.1e-06 54.7 49 65.3
Gorai.004G232500 Gossypium raimondii HOM05D002258 ORTHO05D002539 4.1e-06 54.7 49 65.3
Manes.09G106600 Manihot esculenta HOM05D002258 ORTHO05D002539 4.1e-06 54.7 59 52.5
Nn2g10905 Nelumbo nucifera HOM05D002258 ORTHO05D002539 4.1e-06 54.7 45 73.3
Nitab4.5_0008458g0030 Nicotiana tabacum HOM05D002258 ORTHO05D002539 4.1e-06 54.7 44 68.2
Prupe.6G054200 Prunus persica HOM05D002258 ORTHO05D002539 4.1e-06 54.7 45 73.3
Rhsim13G0067700 Rhododendron simsii HOM05D002258 ORTHO05D002539 4.1e-06 54.7 44 75.0
Hund08115 Selenicereus undatus HOM05D002258 ORTHO05D002539 4.1e-06 54.7 56 57.1
THA.LOC104815809 Tarenaya hassleriana HOM05D002258 ORTHO05D002539 4.1e-06 54.7 40 80.0
THA.LOC104826282 Tarenaya hassleriana HOM05D002258 ORTHO05D002539 4.1e-06 54.7 44 72.7
Aqoxy7G04017 Aquilegia oxysepala HOM05D002258 ORTHO05D002249 5.4e-06 54.3 58 51.7
AL4G24830 Arabidopsis lyrata HOM05D002258 ORTHO05D002539 5.4e-06 54.3 48 68.8
BcaB01g04133 Brassica carinata HOM05D002258 ORTHO05D002539 5.4e-06 54.3 48 66.7
BcaC07g42022 Brassica carinata HOM05D002258 ORTHO05D002539 5.4e-06 54.3 54 57.4
A03p16760 Brassica napus HOM05D002258 ORTHO05D002539 5.4e-06 54.3 48 66.7
C08p50780 Brassica napus HOM05D002258 ORTHO05D002539 5.4e-06 54.3 54 57.4
BolC8t52606H Brassica oleracea HOM05D002258 ORTHO05D002539 5.4e-06 54.3 54 57.4
BraA03t10964Z Brassica rapa HOM05D002258 ORTHO05D002539 5.4e-06 54.3 48 66.7
Gohir.D05G107600 Gossypium hirsutum HOM05D002258 ORTHO05D002539 5.4e-06 54.3 60 55.0
Gorai.009G111700 Gossypium raimondii HOM05D002258 ORTHO05D002539 5.4e-06 54.3 60 55.0
Nn2g13180 Nelumbo nucifera HOM05D002258 ORTHO05D002539 5.4e-06 54.3 45 73.3
Sabra16G0115700 Salix brachista HOM05D002258 ORTHO05D002539 5.4e-06 54.3 63 55.6
TPR.G17058 Trifolium pratense HOM05D002258 ORTHO05D002539 5.4e-06 54.3 49 67.3
EL10Ac9g22380 Beta vulgaris HOM05D002258 ORTHO05D002539 7.0e-06 53.9 56 53.6
BcaB02g06750 Brassica carinata HOM05D002258 ORTHO05D002539 7.0e-06 53.9 54 57.4
Carub.0004s1116 Capsella rubella HOM05D002258 ORTHO05D002539 7.0e-06 53.9 48 66.7
DCAR_007361 Daucus carota HOM05D002258 ORTHO05D002539 7.0e-06 53.9 47 66.0
ECA247G0222 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.0e-06 53.9 44 72.7
Glyma.10G220800 Glycine max HOM05D002258 ORTHO05D002539 7.0e-06 53.9 49 67.3
Glyma.20G170700 Glycine max HOM05D002258 ORTHO05D002539 7.0e-06 53.9 49 67.3
Hma1.2p1_1981F.1_g309900 Hydrangea macrophylla HOM05D002258 ORTHO05D002539 7.0e-06 53.9 44 72.7
Potri.001G278900 Populus trichocarpa HOM05D002258 ORTHO05D002539 7.0e-06 53.9 49 65.3
QL06p050723 Quercus lobata HOM05D002258 ORTHO05D002539 7.0e-06 53.9 45 71.1
TWI77G0019 Tripterygium wilfordii HOM05D002258 ORTHO05D002539 7.0e-06 53.9 58 58.6
Ah.03g136930 Amaranthus hybridus HOM05D002258 ORTHO05D002539 9.2e-06 53.5 56 53.6
Haze_21029 Corylus avellana HOM05D002258 ORTHO05D002539 9.2e-06 53.5 44 68.2
Sp6g20290 Schrenkiella parvula HOM05D002258 ORTHO05D002539 9.2e-06 53.5 48 66.7


User provided reference genes

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