Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 2.0e-107 392.5 203 100.0
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.8e-68 263.1 198 71.2
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 1.1e-60 237.3 199 67.3
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 1.8e-39 166.8 231 43.7
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 6.7e-39 164.9 219 46.1
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 1.9e-38 163.3 206 45.6
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 6.2e-37 158.3 192 43.8
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 6.2e-37 158.3 209 44.0
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 3.1e-36 156.0 197 46.2
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 4.0e-36 155.6 209 43.5
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 2.0e-35 153.3 209 43.5
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.6e-35 152.9 218 42.7
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 5.8e-35 151.8 225 40.9
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 1.0e-34 151.0 223 40.8
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 2.9e-34 149.4 231 42.0
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 6.5e-34 148.3 207 42.0
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 1.4e-33 147.1 205 42.4
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 1.4e-33 147.1 214 43.9
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 3.2e-33 146.0 206 41.7
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 4.2e-33 145.6 206 42.2
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 4.2e-33 145.6 235 40.9
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 7.1e-33 144.8 211 42.7
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 3.5e-32 142.5 205 41.5
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 6.0e-32 141.7 220 38.2
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 6.0e-32 141.7 205 42.9
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 6.0e-32 141.7 228 40.4
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 7.9e-32 141.4 192 43.2
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 1.0e-31 141.0 213 40.8
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.8e-31 140.2 226 39.4
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 3.9e-31 139.0 198 39.9
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 5.1e-31 138.7 193 41.5
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 8.7e-31 137.9 202 43.1
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 1.1e-30 137.5 218 39.4
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 1.9e-30 136.7 209 42.6
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 2.5e-30 136.3 204 38.2
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 3.3e-30 136.0 202 39.6
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 3.3e-30 136.0 202 42.6
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 3.3e-30 136.0 193 43.0
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 4.3e-30 135.6 207 39.6
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 5.7e-30 135.2 184 42.9
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 9.6e-30 134.4 236 36.9
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 1.3e-29 134.0 203 39.4
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 1.3e-29 134.0 225 41.3
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 1.3e-29 134.0 173 42.2
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 1.6e-29 133.7 219 41.1
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 2.1e-29 133.3 205 40.5
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 2.1e-29 133.3 201 40.3
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 2.1e-29 133.3 210 42.4
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 3.7e-29 132.5 201 39.8
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 3.7e-29 132.5 222 41.9
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 4.8e-29 132.1 208 40.4
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 4.8e-29 132.1 214 39.7
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 6.3e-29 131.7 228 38.2
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 6.3e-29 131.7 229 35.4
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 8.2e-29 131.3 202 42.6
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 8.2e-29 131.3 216 39.4
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 1.1e-28 131.0 225 39.1
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 1.4e-28 130.6 198 39.4
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 1.8e-28 130.2 226 35.0
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 1.8e-28 130.2 219 37.4
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 1.8e-28 130.2 221 38.5
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 2.4e-28 129.8 212 41.0
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 2.4e-28 129.8 219 38.8
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 2.4e-28 129.8 205 40.5
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 3.1e-28 129.4 237 35.0
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.1e-28 129.4 212 38.7
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 5.3e-28 128.6 200 40.0
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 6.9e-28 128.3 208 41.3
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 1.2e-27 127.5 214 38.3
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 2.0e-27 126.7 205 39.5
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 2.0e-27 126.7 201 40.8
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 2.6e-27 126.3 206 40.3
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 2.6e-27 126.3 204 44.1
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 2.6e-27 126.3 178 43.3
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 3.4e-27 125.9 217 39.2
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 4.5e-27 125.6 227 36.1
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 7.6e-27 124.8 209 40.7
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 1.3e-26 124.0 217 35.9
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 1.7e-26 123.6 230 34.3
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 2.2e-26 123.2 214 38.8
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 2.9e-26 122.9 205 39.5
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 2.9e-26 122.9 222 39.2
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 5.0e-26 122.1 208 37.5
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 8.4e-26 121.3 219 39.7
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 8.4e-26 121.3 219 37.9
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.4e-25 120.6 228 35.1
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.9e-25 120.2 216 34.7
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 2.5e-25 119.8 220 37.7
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 2.5e-25 119.8 206 38.8
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 3.2e-25 119.4 216 34.7
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 7.2e-25 118.2 197 37.1
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 7.2e-25 118.2 218 39.0
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 6.1e-24 115.2 212 38.7
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 7.9e-24 114.8 224 35.7
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.0e-23 114.4 193 42.0
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 1.8e-23 113.6 184 37.0
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 3.9e-23 112.5 151 42.4
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 5.1e-23 112.1 228 33.8
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 2.5e-22 109.8 186 40.3
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 2.5e-22 109.8 228 34.2
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 5.7e-22 108.6 219 35.6
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 5.7e-22 108.6 141 44.0
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 8.2e-21 104.8 223 34.5
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 1.1e-20 104.4 226 35.0
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 2.4e-20 103.2 203 34.0
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 2.4e-20 103.2 109 50.5
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 1.2e-19 100.9 111 49.5
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 2.0e-19 100.1 211 34.1
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 8.5e-18 94.7 191 35.1
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.9e-17 93.6 193 31.6
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 1.2e-16 90.9 130 46.2
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 1.6e-16 90.5 229 30.1
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 5.1e-15 85.5 224 29.0
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 5.1e-15 85.5 224 28.6
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 5.1e-15 85.5 179 33.0
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 1.5e-14 84.0 208 31.7
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 1.5e-14 84.0 224 28.6
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 2.8e-13 79.7 142 37.3
CSS0015165 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 6.3e-13 78.6 125 40.0
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 6.3e-13 78.6 225 29.8
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 1.1e-12 77.8 129 38.0
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.4e-12 76.6 226 27.9
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 9.1e-12 74.7 206 28.6
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 1.2e-11 74.3 240 30.8
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 1.5e-11 73.9 245 30.6
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 2.0e-11 73.6 239 31.0
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 2.0e-11 73.6 173 34.1
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 3.4e-11 72.8 240 30.0
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 5.9e-11 72.0 238 30.3
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 1.0e-10 71.2 213 29.1
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 1.7e-10 70.5 221 31.2
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 2.9e-10 69.7 238 30.3
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.9e-10 69.7 219 26.5
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 3.8e-10 69.3 234 29.9
CDE02G4410 Ceratophyllum demersum HOM05D001668 ORTHO05D005522 3.8e-10 69.3 142 30.3
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 1.1e-09 67.8 210 27.1
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 1.4e-09 67.4 212 26.4
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 1.4e-09 67.4 124 34.7
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 1.9e-09 67.0 212 26.4
SGA_v2.0_scaffold80G25871 Striga asiatica HOM05D003097 ORTHO05D003437 3.2e-09 66.2 172 31.4
CSS0029047 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 5.5e-09 65.5 124 36.3
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 5.5e-09 65.5 114 33.3
TWI75G0491 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 9.4e-09 64.7 143 31.5
Aa31LG8G6630 Aethionema arabicum HOM05D003097 ORTHO05D003437 1.6e-08 63.9 123 31.7
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 2.7e-08 63.2 235 28.1
CANSAT01G2970 Cannabis sativa HOM05D003097 ORTHO05D003437 2.7e-08 63.2 161 30.4
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 3.6e-08 62.8 87 41.4
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 1.0e-07 61.2 97 43.3
BcaNung03019 Brassica carinata HOM05D003097 ORTHO05D003437 1.8e-07 60.5 71 47.9
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 3.0e-07 59.7 239 28.9
Dinv33630 Davidia involucrata HOM05D003097 ORTHO05D003437 3.0e-07 59.7 123 31.7
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 3.9e-07 59.3 239 28.9
MD16G1216000 Malus domestica HOM05D001139 ORTHO05D000936 3.9e-07 59.3 127 33.1
SGA_v2.0_scaffold308G48089 Striga asiatica HOM05D001139 ORTHO05D000936 3.9e-07 59.3 124 31.5
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 6.7e-07 58.5 94 38.3
Duzib151G0978 Durio zibethinus HOM05D001139 ORTHO05D000936 8.8e-07 58.2 110 34.5
Thhalv10026039m.g Eutrema salsugineum HOM05D003097 ORTHO05D003437 8.8e-07 58.2 60 53.3
Ca_12533_v3 Cicer arietinum L. HOM05D000822 ORTHO05D002021 2.0e-06 57.0 183 26.2
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 2.0e-06 57.0 108 30.6
Gohir.A03G203100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 4.4e-06 55.8 141 31.2
Gohir.D02G224400 Gossypium hirsutum HOM05D003097 ORTHO05D003437 4.4e-06 55.8 141 31.2
Pp3c11_20170 Physcomitrium patens HOM05D003097 ORTHO05D005522 4.4e-06 55.8 93 33.3
Migut.N00259 Erythranthe guttata HOM05D001139 ORTHO05D000936 5.7e-06 55.5 102 33.3
Sp7g33840 Schrenkiella parvula HOM05D003097 ORTHO05D003437 5.7e-06 55.5 60 51.7
AL3G37860 Arabidopsis lyrata HOM05D001139 ORTHO05D000936 7.4e-06 55.1 127 31.5
unitig_749.g13974 Utricularia gibba HOM05D000221 ORTHO05D000936 7.4e-06 55.1 140 31.4
Gohir.A11G175100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 9.7e-06 54.7 122 32.0
Sabra09G0099100 Salix brachista HOM05D003097 ORTHO05D003437 9.7e-06 54.7 108 30.6


User provided reference genes

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