Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 0.0e+00 1495.7 806 100.0
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 3.1e-172 609.8 899 48.4
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 2.0e-166 590.5 920 44.7
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 5.9e-163 578.9 785 49.6
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 5.9e-163 578.9 858 46.9
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 3.0e-159 566.6 871 44.9
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 8.8e-159 565.1 865 45.9
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.7e-157 560.8 927 43.3
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.7e-157 559.7 927 43.3
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 3.7e-157 559.7 943 42.9
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.1e-156 556.6 893 44.2
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.2e-155 554.7 869 46.4
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 3.8e-154 549.7 905 44.1
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 8.5e-154 548.5 897 45.3
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.1e-152 543.9 920 43.7
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.5e-150 537.7 777 50.5
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 2.6e-150 537.0 868 43.8
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.7e-150 535.8 899 43.5
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 7.5e-150 535.4 868 45.3
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.2e-149 533.9 909 42.9
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.7e-149 533.1 899 43.5
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 8.2e-149 531.9 899 43.4
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.4e-148 531.2 899 43.2
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-148 531.2 924 42.2
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.4e-148 530.4 924 42.2
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.1e-148 530.0 924 42.3
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 7.0e-148 528.9 881 44.2
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.0e-147 527.3 858 43.5
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 2.2e-146 523.9 886 42.6
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.2e-146 523.9 881 41.4
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 3.8e-146 523.1 932 41.7
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.0e-146 522.7 858 43.4
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.2e-145 519.6 861 42.7
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 7.2e-145 518.8 903 42.1
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 9.4e-145 518.5 929 41.8
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 1.4e-143 514.6 932 42.0
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 4.0e-143 513.1 907 42.3
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 4.0e-143 513.1 854 43.4
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.2e-142 511.5 931 39.7
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.0e-142 510.8 899 42.4
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 4.4e-142 509.6 898 42.5
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 1.7e-141 507.7 888 41.1
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 4.8e-141 506.1 903 41.3
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 2.4e-140 503.8 943 40.7
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 1.2e-139 501.5 904 43.0
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 3.5e-139 500.0 915 43.2
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 7.7e-139 498.8 957 42.5
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.0e-138 498.4 919 41.1
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.0e-138 498.4 915 40.0
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.3e-138 498.0 838 40.9
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.2e-138 497.3 939 41.9
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.9e-137 494.2 918 40.3
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 3.2e-137 493.4 906 40.7
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.2e-136 491.5 872 41.2
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 6.1e-136 489.2 902 40.0
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-135 487.6 920 39.9
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.0e-135 486.9 907 43.2
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.8e-135 485.7 922 39.7
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.2e-134 485.0 908 40.1
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 3.4e-134 483.4 878 40.1
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 5.7e-134 482.6 917 38.5
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 3.1e-132 476.9 865 42.2
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.6e-131 474.6 827 44.1
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 2.7e-131 473.8 865 40.7
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.5e-131 473.0 918 39.7
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 5.0e-130 469.5 870 40.7
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 6.6e-130 469.2 916 40.2
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 1.9e-129 467.6 902 39.8
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.9e-129 467.6 651 48.5
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.9e-129 467.6 855 40.7
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 3.6e-128 463.4 924 39.4
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.0e-127 461.8 875 40.2
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 4.0e-127 459.9 805 40.1
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 5.2e-127 459.5 950 37.8
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.5e-126 458.0 768 44.4
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.6e-126 457.2 819 40.9
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 5.7e-126 456.1 923 38.0
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 7.5e-126 455.7 851 37.8
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.2e-125 454.1 855 41.9
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.7e-125 453.4 848 41.2
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 3.7e-125 453.4 850 38.9
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 6.4e-125 452.6 889 39.8
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.0e-123 447.6 889 38.1
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 1.0e-122 445.3 820 39.4
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.3e-122 444.1 823 41.9
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 2.5e-121 440.7 897 39.6
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 2.5e-121 440.7 872 39.3
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 7.3e-121 439.1 968 38.3
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.8e-119 434.5 916 38.2
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.8e-119 434.5 820 38.8
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 4.0e-119 433.3 852 38.8
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 8.9e-119 432.2 803 40.7
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 1.2e-118 431.8 879 37.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.0e-118 431.0 865 41.5
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.4e-118 430.3 613 47.8
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.3e-117 428.3 858 38.3
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.2e-117 427.6 819 38.9
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 3.2e-116 423.7 850 38.4
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 7.8e-115 419.1 900 36.8
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 1.7e-114 417.9 893 38.5
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 5.6e-113 412.9 840 41.4
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.1e-112 411.0 876 38.2
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 4.7e-112 409.8 912 36.6
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-111 408.3 899 38.6
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 4.0e-111 406.8 844 41.4
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 4.0e-111 406.8 874 38.8
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.2e-110 405.2 865 38.4
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.2e-110 405.2 827 40.6
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 5.8e-110 402.9 758 39.1
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 6.4e-109 399.4 898 35.4
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.4e-108 398.3 759 39.1
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 1.9e-108 397.9 569 44.6
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 9.2e-108 395.6 927 36.5
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.3e-106 391.0 850 36.0
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.0e-106 390.6 853 36.7
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.6e-106 389.4 861 38.1
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 6.6e-106 389.4 837 37.8
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.9e-105 387.9 803 39.0
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.9e-105 387.9 661 41.8
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 2.1e-104 384.4 833 38.8
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.8e-104 384.0 744 41.3
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 6.2e-104 382.9 831 38.9
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 6.2e-104 382.9 742 40.7
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.4e-103 381.7 833 38.7
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 4.0e-103 380.2 835 39.0
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 5.2e-103 379.8 721 41.3
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.5e-102 378.3 846 38.1
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.5e-102 378.3 846 38.1
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 3.4e-102 377.1 841 38.4
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.8e-102 376.3 664 41.4
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.2e-96 358.6 807 37.8
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 4.7e-96 356.7 721 38.4
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 4.7e-96 356.7 690 41.2
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 5.2e-95 353.2 780 35.4
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.4e-87 328.6 708 37.1
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.1e-84 318.9 611 41.9
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.9e-84 318.2 677 39.6
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.1e-81 308.9 437 44.6
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 6.2e-80 303.1 798 33.1
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.6e-78 296.2 674 37.5
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 3.7e-72 277.3 465 41.5
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 6.5e-69 266.5 502 39.8
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 4.2e-68 263.8 714 34.2
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.5e-68 263.5 468 44.4
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 6.0e-67 260.0 752 35.4
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 1.8e-66 258.5 763 32.4
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 9.6e-65 252.7 402 42.3
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.0e-58 231.1 759 32.9
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.7e-57 226.9 751 29.3
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.8e-56 224.6 709 30.9
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.6e-54 218.0 696 33.3
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.7e-54 216.5 431 38.5
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 1.1e-52 212.6 355 42.3
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.6e-51 208.8 256 46.5
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.7e-50 203.4 320 44.4
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 5.3e-47 193.7 350 48.3
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 4.8e-40 170.6 390 39.2
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 4.2e-36 157.5 298 39.3
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 5.2e-34 150.6 442 28.5
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 3.7e-32 144.4 207 43.0
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.5e-30 137.9 554 32.1
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.7e-29 135.6 245 37.6
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 2.1e-27 128.6 157 45.2
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.8e-26 125.6 339 33.3
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.8e-26 123.6 255 38.0
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 2.0e-25 122.1 107 54.2
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-24 119.4 255 43.9
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.0e-22 112.1 113 48.7
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 5.9e-22 110.5 141 48.9
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.6e-17 95.1 127 43.3
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.7e-13 82.4 80 50.0
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.6e-11 75.9 120 37.5
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 6.1e-11 73.9 110 40.0
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.8e-10 70.5 128 36.7
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.9e-10 70.1 79 46.8
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 9.8e-09 66.6 41 75.6
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 2.9e-08 65.1 66 39.4
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.4e-07 62.0 77 41.6
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 7.8e-06 57.0 120 39.2


User provided reference genes

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