Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 1.2e-225 787.3 896 100.0
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 3.7e-41 174.5 263 53.2
ECA232G0949 Erigeron canadensis HOM05D012625 ORTHO05D003332 1.2e-34 152.9 268 48.1
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 6.0e-23 114.0 169 45.6
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 4.0e-19 101.3 138 39.1
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.9e-17 95.1 82 56.1
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.7e-17 94.7 72 59.7
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 8.3e-17 93.6 88 52.3
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 1.1e-16 93.2 128 43.0
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 2.4e-16 92.0 66 62.1
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 2.4e-16 92.0 83 55.4
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 2.4e-16 92.0 71 59.2
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 3.2e-16 91.7 91 51.6
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 5.4e-16 90.9 123 41.5
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 7.0e-16 90.5 145 38.6
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.2e-15 89.7 143 35.7
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 2.1e-15 89.0 108 45.4
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 2.7e-15 88.6 147 36.1
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 4.6e-15 87.8 78 52.6
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 4.6e-15 87.8 66 63.6
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 6.0e-15 87.4 67 61.2
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.8e-15 87.0 126 42.1
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 1.0e-14 86.7 81 54.3
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 1.0e-14 86.7 89 43.8
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.7e-14 85.9 86 47.7
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 5.1e-14 84.3 132 38.6
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 6.6e-14 84.0 67 56.7
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.1e-13 83.2 73 52.1
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.9e-13 82.4 90 45.6
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 1.9e-13 82.4 69 55.1
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.3e-13 81.6 65 58.5
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 4.3e-13 81.3 90 41.1
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 5.6e-13 80.9 66 56.1
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 5.6e-13 80.9 66 56.1
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 5.6e-13 80.9 66 56.1
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 5.6e-13 80.9 66 56.1
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 5.6e-13 80.9 78 51.3
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 7.3e-13 80.5 120 36.7
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 7.3e-13 80.5 120 39.2
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 9.5e-13 80.1 113 38.9
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 9.5e-13 80.1 67 50.7
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 1.2e-12 79.7 80 46.2
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 1.2e-12 79.7 110 39.1
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.2e-12 79.7 134 35.1
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.6e-12 79.3 65 52.3
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 2.1e-12 79.0 118 36.4
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 2.1e-12 79.0 89 42.7
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 2.8e-12 78.6 103 37.9
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.8e-12 78.6 95 40.0
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 3.6e-12 78.2 100 40.0
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 3.6e-12 78.2 95 41.1
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 3.6e-12 78.2 68 50.0
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 3.6e-12 78.2 76 48.7
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 4.7e-12 77.8 94 41.5
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 6.2e-12 77.4 107 40.2
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 8.1e-12 77.0 111 34.2
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 8.1e-12 77.0 109 40.4
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.1e-11 76.6 75 46.7
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 1.4e-11 76.3 111 36.9
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 1.4e-11 76.3 76 44.7
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.4e-11 76.3 74 48.6
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 1.8e-11 75.9 79 44.3
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 1.8e-11 75.9 71 47.9
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.3e-11 75.5 88 45.5
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.3e-11 75.5 99 40.4
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.3e-11 75.5 99 40.4
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 2.3e-11 75.5 99 40.4
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 2.3e-11 75.5 89 49.4
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 2.3e-11 75.5 83 47.0
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 2.3e-11 75.5 63 50.8
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 3.1e-11 75.1 66 50.0
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 3.1e-11 75.1 67 49.3
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 4.0e-11 74.7 67 47.8
AUR62016000 Chenopodium quinoa HOM05D025484 ORTHO05D003332 4.0e-11 74.7 85 50.6
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 4.0e-11 74.7 109 36.7
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 4.0e-11 74.7 72 45.8
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 5.2e-11 74.3 82 47.6
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 6.8e-11 73.9 96 41.7
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 6.8e-11 73.9 82 46.3
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 8.9e-11 73.6 75 46.7
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 1.5e-10 72.8 97 45.4
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.0e-10 72.4 123 34.1
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 2.0e-10 72.4 97 45.4
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 2.6e-10 72.0 64 50.0
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 2.6e-10 72.0 92 39.1
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 2.6e-10 72.0 119 31.9
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 3.4e-10 71.6 90 45.6
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 3.4e-10 71.6 155 36.1
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 3.4e-10 71.6 76 43.4
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 4.4e-10 71.2 65 47.7
MBI17_g21053_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 4.4e-10 71.2 80 48.8
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 5.8e-10 70.9 78 42.3
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 5.8e-10 70.9 66 47.0
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 7.5e-10 70.5 93 38.7
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 7.5e-10 70.5 93 38.7
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 7.5e-10 70.5 69 47.8
Sc13g0008550 Simmondsia chinensis HOM05D025484 ORTHO05D003332 7.5e-10 70.5 131 39.7
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 9.9e-10 70.1 117 36.8
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 9.9e-10 70.1 58 51.7
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 1.3e-09 69.7 77 44.2
Thhalv10012954m.g Eutrema salsugineum HOM05D012366 ORTHO05D003332 1.3e-09 69.7 120 35.8
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.7e-09 69.3 125 33.6
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 1.7e-09 69.3 82 37.8
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 1.7e-09 69.3 94 40.4
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 2.2e-09 68.9 92 34.8
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 2.9e-09 68.6 125 32.0
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 3.7e-09 68.2 84 38.1
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 4.9e-09 67.8 131 33.6
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 4.9e-09 67.8 111 36.0
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 8.3e-09 67.0 78 42.3
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 8.3e-09 67.0 71 43.7
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 8.3e-09 67.0 71 43.7
Ah.07g207320 Amaranthus hybridus HOM05D025484 ORTHO05D017259 1.1e-08 66.6 102 40.2
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 1.1e-08 66.6 117 35.0
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 1.1e-08 66.6 128 35.2
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.1e-08 66.6 66 45.5
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.4e-08 66.2 68 47.1
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 1.4e-08 66.2 86 39.5
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 1.9e-08 65.9 69 46.4
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.9e-08 65.9 92 37.0
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.9e-08 65.9 119 37.8
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 1.9e-08 65.9 89 41.6
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 1.9e-08 65.9 63 52.4
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 2.4e-08 65.5 79 41.8
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 2.4e-08 65.5 69 46.4
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 2.4e-08 65.5 101 36.6
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 2.4e-08 65.5 71 42.3
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 2.4e-08 65.5 58 48.3
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 2.4e-08 65.5 105 38.1
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 4.1e-08 64.7 83 41.0
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 4.1e-08 64.7 96 38.5
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 5.4e-08 64.3 84 41.7
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 5.4e-08 64.3 66 42.4
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 7.1e-08 63.9 125 37.6
SGA_v2.0_scaffold2G01065 Striga asiatica HOM05D003520 ORTHO05D003332 7.1e-08 63.9 56 51.8
Zm00001eb430800 Zea mays HOM05D023145 ORTHO05D003332 7.1e-08 63.9 140 35.7
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 9.2e-08 63.5 132 36.4
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.2e-07 63.2 69 46.4
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 1.2e-07 63.2 127 32.3
Lj8C25T11 Lonicera japonica HOM05D003520 ORTHO05D003332 2.1e-07 62.4 78 43.6
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 2.7e-07 62.0 117 34.2
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 1.7e-06 59.3 69 43.5
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.7e-06 59.3 68 44.1
Hund04730 Selenicereus undatus HOM05D025484 ORTHO05D003332 1.7e-06 59.3 65 50.8
BcaC04g20600 Brassica carinata HOM05D012366 ORTHO05D003332 2.3e-06 58.9 73 38.4
C09p41640 Brassica napus HOM05D012366 ORTHO05D003332 2.3e-06 58.9 73 38.4
Actinidia34100 Actinidia chinensis HOM05D003520 ORTHO05D003332 3.9e-06 58.2 72 44.4
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 3.9e-06 58.2 109 35.8
A10p09930 Brassica napus HOM05D012366 ORTHO05D003332 5.1e-06 57.8 76 36.8
BraA10t43073Z Brassica rapa HOM05D012366 ORTHO05D003332 5.1e-06 57.8 76 36.8
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 5.1e-06 57.8 75 37.3
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 6.6e-06 57.4 56 44.6
vmacro06696 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 6.6e-06 57.4 47 59.6
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 8.6e-06 57.0 91 33.0
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 8.6e-06 57.0 112 33.0
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 8.6e-06 57.0 151 30.5


User provided reference genes

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