Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 2.5e-153 545.4 282 100.0
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 1.8e-111 406.4 237 86.9
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 2.3e-106 389.4 280 75.0
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 2.2e-101 372.9 270 71.5
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 7.2e-100 367.9 238 77.7
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 9.4e-100 367.5 222 81.5
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 9.4e-100 367.5 269 73.6
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.6e-99 366.7 270 72.6
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 4.7e-99 365.2 268 73.1
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 6.1e-99 364.8 239 77.8
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.0e-98 364.0 229 81.7
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 1.4e-98 363.6 228 80.7
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 3.0e-98 362.5 270 72.6
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 5.2e-98 361.7 266 71.1
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 8.8e-98 360.9 258 74.4
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 3.3e-97 359.0 222 79.3
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 3.3e-97 359.0 222 79.3
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 3.3e-97 359.0 261 73.6
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 4.4e-97 358.6 227 80.6
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 5.7e-97 358.2 222 79.3
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 7.4e-97 357.8 234 76.9
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 9.7e-97 357.5 226 79.6
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 1.7e-96 356.7 215 82.8
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 2.2e-96 356.3 268 70.9
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 3.7e-96 355.5 220 80.0
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 3.7e-96 355.5 261 72.0
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 4.8e-96 355.1 227 78.0
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 6.3e-96 354.8 223 81.2
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.1e-95 354.0 267 70.0
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 1.1e-95 354.0 249 74.7
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 1.4e-95 353.6 220 80.9
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.8e-95 353.2 222 78.8
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 2.4e-95 352.8 269 70.6
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.4e-95 352.8 218 79.8
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 5.3e-95 351.7 244 73.8
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 1.2e-94 350.5 216 81.5
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 1.6e-94 350.1 217 79.7
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.6e-94 350.1 270 70.7
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 1.6e-94 350.1 223 79.8
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 1.6e-94 350.1 279 68.8
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.5e-94 349.0 230 77.8
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 3.5e-94 349.0 242 74.4
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 5.9e-94 348.2 222 79.7
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 7.7e-94 347.8 269 69.9
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.0e-93 347.4 270 69.6
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 2.2e-93 346.3 275 70.5
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.2e-93 346.3 255 70.6
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 2.2e-93 346.3 229 77.7
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 3.8e-93 345.5 238 74.4
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 3.8e-93 345.5 238 75.2
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 3.8e-93 345.5 235 75.3
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 8.5e-93 344.4 261 69.7
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 8.5e-93 344.4 219 79.0
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 1.1e-92 344.0 221 77.8
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.9e-92 343.2 228 76.8
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 2.5e-92 342.8 205 83.9
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 2.5e-92 342.8 219 79.9
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 4.2e-92 342.0 231 74.5
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 4.2e-92 342.0 207 82.6
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 4.2e-92 342.0 224 76.8
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 5.5e-92 341.7 249 72.7
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 7.2e-92 341.3 234 73.5
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 9.4e-92 340.9 238 73.1
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 9.4e-92 340.9 219 76.7
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 1.6e-91 340.1 207 83.6
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 1.6e-91 340.1 247 72.5
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 2.7e-91 339.3 208 79.8
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 2.7e-91 339.3 219 76.7
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 4.7e-91 338.6 219 77.2
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 1.0e-90 337.4 229 72.9
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.4e-90 337.0 219 75.3
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 2.3e-90 336.3 277 65.0
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 5.2e-90 335.1 240 70.4
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 6.8e-90 334.7 229 72.5
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 6.8e-90 334.7 277 64.6
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 1.2e-89 334.0 251 70.5
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 3.4e-89 332.4 223 75.3
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 4.4e-89 332.0 264 66.3
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.3e-88 330.5 206 77.7
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 2.8e-88 329.3 245 70.6
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 3.7e-88 328.9 227 73.6
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 3.7e-88 328.9 246 71.1
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 1.1e-87 327.4 258 69.4
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 1.1e-87 327.4 258 69.4
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 2.4e-87 326.2 253 70.4
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 7.0e-87 324.7 258 68.6
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 4.5e-86 322.0 224 74.6
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.0e-85 320.9 261 66.3
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 1.0e-85 320.9 258 68.2
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 2.9e-85 319.3 257 66.5
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 3.8e-85 318.9 220 75.0
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 5.0e-85 318.5 267 65.2
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 8.5e-85 317.8 274 65.3
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.5e-84 317.0 188 82.4
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 1.9e-84 316.6 258 64.3
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 9.4e-84 314.3 257 65.8
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 2.1e-83 313.2 205 75.6
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 3.6e-83 312.4 250 66.4
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 2.3e-82 309.7 259 64.9
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.5e-81 307.0 178 83.7
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 2.0e-81 306.6 246 69.1
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.0e-81 306.6 246 66.7
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 9.8e-81 304.3 218 71.6
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 1.7e-80 303.5 235 67.2
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 4.9e-80 302.0 239 66.9
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 2.5e-76 289.7 239 65.7
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 2.3e-74 283.1 216 64.4
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.6e-70 270.4 222 59.9
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 1.9e-68 263.5 205 68.3
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 9.5e-68 261.2 224 58.5
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 1.5e-60 237.3 179 60.9
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 2.1e-59 233.4 199 58.3
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.2e-49 201.1 135 73.3
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.3e-48 197.6 114 84.2
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.1e-46 190.3 149 63.8
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 3.6e-43 179.5 211 46.4
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 6.0e-38 162.2 166 48.2
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 5.5e-23 112.5 171 36.3
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 6.7e-21 105.5 77 67.5
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.3e-20 103.2 75 73.3
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.5e-17 92.8 56 78.6
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 1.5e-12 77.8 158 34.2
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 2.6e-09 67.0 225 25.3
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 2.2e-08 63.9 231 25.1
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 6.5e-08 62.4 233 23.6
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 3.2e-07 60.1 258 23.6
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 4.2e-07 59.7 224 23.7
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 5.5e-07 59.3 192 26.0
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.2e-06 58.2 77 45.5
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 1.6e-06 57.8 227 22.9
Nn3g20127 Nelumbo nucifera HOM05D002933 ORTHO05D009221 2.7e-06 57.0 191 25.1
Sabra10G0162300 Salix brachista HOM05D002933 ORTHO05D009221 2.7e-06 57.0 241 22.8
Medtr1g115410 Medicago truncatula HOM05D002933 ORTHO05D009221 3.5e-06 56.6 236 22.9
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 4.6e-06 56.2 209 24.4
THA.LOC104824260 Tarenaya hassleriana HOM05D002933 ORTHO05D009221 4.6e-06 56.2 238 23.1
Eucgr.G02907 Eucalyptus grandis HOM05D002933 ORTHO05D009221 7.9e-06 55.5 224 22.8
Lalb_Chr21g0307341 Lupinus albus HOM05D002933 ORTHO05D009221 7.9e-06 55.5 187 24.1
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 7.9e-06 55.5 221 22.6


User provided reference genes

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