Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 0.0e+00 1851.3 925 100.0
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 0.0e+00 1194.9 960 65.1
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 0.0e+00 1166.8 949 65.5
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 2.0e-279 966.1 964 53.6
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 1.1e-277 960.3 978 53.9
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 5.7e-271 937.9 967 52.7
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 6.3e-270 934.5 1013 50.5
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 1.0e-267 927.2 969 52.3
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 4.0e-264 915.2 969 52.4
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 1.8e-261 906.4 971 51.2
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 1.6e-257 893.3 978 51.6
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 4.4e-255 885.2 978 48.6
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 5.7e-255 884.8 972 49.1
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 7.5e-255 884.4 974 49.8
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 3.5e-252 875.5 980 49.3
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 1.1e-250 870.5 981 48.7
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 2.8e-249 865.9 975 49.1
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 2.3e-248 862.8 978 49.6
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 8.9e-248 860.9 962 49.9
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.5e-247 860.1 1041 46.9
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 3.4e-247 859.0 912 51.2
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 9.8e-247 857.4 979 48.9
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 2.4e-245 852.8 906 51.5
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 1.6e-244 850.1 972 49.2
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 2.0e-244 849.7 962 49.7
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 1.0e-243 847.4 999 48.0
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 6.6e-243 844.7 942 49.6
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 9.5e-242 840.9 1005 47.8
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 4.6e-236 822.0 968 46.1
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 6.2e-233 811.6 985 47.2
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 8.1e-233 811.2 958 47.8
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 5.8e-231 805.1 928 48.6
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 1.3e-230 803.9 958 47.2
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 2.7e-228 796.2 852 51.6
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 3.5e-228 795.8 904 48.8
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.7e-227 793.5 996 46.5
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 2.6e-223 779.6 971 45.3
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 2.9e-222 776.2 948 46.1
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 6.4e-222 775.0 955 46.1
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 7.1e-221 771.5 1043 43.1
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 8.7e-219 764.6 997 44.8
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 4.3e-218 762.3 931 46.4
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 1.3e-217 760.8 853 48.9
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 4.8e-217 758.8 1004 45.5
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 1.8e-216 756.9 903 47.2
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 3.4e-215 752.7 935 44.8
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 4.5e-215 752.3 846 50.5
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 1.9e-213 746.9 904 46.2
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 1.6e-204 717.2 966 44.6
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 4.3e-202 709.1 763 52.3
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 2.1e-201 706.8 1008 43.6
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 1.4e-192 677.6 955 41.4
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 3.4e-191 672.9 801 47.3
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 2.9e-190 669.8 884 44.2
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 2.9e-190 669.8 785 48.8
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 1.8e-187 660.6 801 47.8
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.9e-186 657.1 893 43.3
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 1.7e-182 644.0 957 42.2
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 1.1e-181 641.3 751 48.6
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 1.9e-181 640.6 656 53.4
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 1.1e-178 631.3 676 51.9
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 4.5e-175 619.4 830 45.4
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 2.9e-174 616.7 756 48.9
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 1.9e-173 614.0 956 40.2
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 4.4e-170 602.8 849 42.4
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 6.3e-169 599.0 822 44.3
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 5.3e-168 595.9 827 43.2
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 1.7e-161 574.3 652 48.8
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 5.3e-160 569.3 699 47.5
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 2.5e-157 560.5 955 38.1
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 1.5e-146 524.6 484 55.2
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 2.3e-131 474.2 428 58.9
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 5.2e-131 473.0 532 50.2
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 2.3e-126 457.6 474 53.0
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 8.1e-124 449.1 756 39.3
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 1.7e-113 414.8 343 59.2
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 5.1e-110 403.3 492 48.4
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 9.0e-107 392.5 281 65.1
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 5.8e-106 389.8 403 51.4
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 6.6e-102 376.3 606 40.8
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 1.3e-92 345.5 799 33.7
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 2.8e-84 317.8 924 29.3
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 4.9e-81 307.0 517 39.8
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 2.3e-78 298.1 245 62.4
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 6.7e-78 296.6 417 41.0
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.1e-77 295.8 496 40.9
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 9.1e-67 259.6 849 26.7
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 1.0e-65 256.1 868 27.8
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 3.8e-65 254.2 949 26.0
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 1.8e-59 235.3 331 45.0
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 4.7e-55 220.7 244 47.5
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 7.4e-53 213.4 196 57.1
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 2.0e-50 205.3 172 57.0
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 7.7e-50 203.4 179 54.2
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 3.2e-48 198.0 171 55.0
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 4.2e-48 197.6 212 49.5
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 2.1e-47 195.3 198 50.0
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 1.0e-30 139.8 241 41.9
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 8.9e-30 136.7 128 49.2
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.7e-28 132.5 123 50.4
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 5.4e-27 127.5 172 50.0
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 9.2e-27 126.7 192 43.8
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 8.6e-25 120.2 208 35.1
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 8.6e-25 120.2 271 33.2
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 6.8e-22 110.5 158 39.2
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 6.8e-22 110.5 130 43.1
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 8.9e-22 110.2 181 35.4
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 1.7e-20 105.9 97 51.5
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 1.1e-19 103.2 101 48.5
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 2.0e-18 99.0 95 51.6
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 3.0e-17 95.1 77 55.8
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 4.4e-13 81.3 93 46.2
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 2.4e-11 75.5 130 36.9
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.7e-10 72.0 102 39.2
SEGI_31670 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 6.0e-10 70.9 120 36.7
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.0e-09 70.1 54 53.7
Glyma.19G193000 Glycine max HOM05D006439 ORTHO05D046803 3.3e-08 65.1 71 45.1
Lj1g0014420 Lotus japonicus HOM05D006439 ORTHO05D046803 4.3e-08 64.7 78 41.0
Lj1g0023385 Lotus japonicus HOM05D006439 ORTHO05D008152 5.6e-08 64.3 74 41.9
CSS0045256 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.2e-07 63.2 67 49.3
CSS0035414 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 4.0e-06 58.2 65 46.2
Sabra03G0131300 Salix brachista HOM05D001219 ORTHO05D001017 8.9e-06 57.0 355 21.7


User provided reference genes

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