Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0246781 Helianthus annuus HOM05D000641 ORTHO05D000944 1.3e-55 219.5 115 100.0
HanXRQChr03g0065521 Helianthus annuus HOM05D000641 ORTHO05D000944 3.9e-28 128.3 70 95.7
ECA240G1180 Erigeron canadensis HOM05D000641 ORTHO05D000944 4.2e-22 108.2 88 68.2
Dinv42831 Davidia involucrata HOM05D000641 ORTHO05D000944 4.8e-10 68.2 70 47.1
Dinv43269 Davidia involucrata HOM05D000641 ORTHO05D000944 4.8e-10 68.2 70 47.1
Atru.chr7.346 Acer truncatum HOM05D000001 ORTHO05D000003 8.2e-10 67.4 70 47.1
TPR.G24839 Trifolium pratense HOM05D000641 ORTHO05D000944 1.4e-09 66.6 70 44.3
GSVIVG01023645001 Vitis vinifera HOM05D000641 ORTHO05D000944 1.4e-09 66.6 73 41.1
EL10Ac8g18925 Beta vulgaris HOM05D000641 ORTHO05D000944 2.4e-09 65.9 70 45.7
AUR62028354 Chenopodium quinoa HOM05D000641 ORTHO05D000944 2.4e-09 65.9 70 44.3
COL.COLO4_23955 Corchorus olitorius HOM05D000641 ORTHO05D000944 2.4e-09 65.9 73 42.5
ECA236G2399 Erigeron canadensis HOM05D000641 ORTHO05D000944 2.4e-09 65.9 70 45.7
HanXRQChr05g0138281 Helianthus annuus HOM05D000641 ORTHO05D000944 2.4e-09 65.9 69 47.8
Prupe.7G265600 Prunus persica HOM05D000641 ORTHO05D000944 2.4e-09 65.9 70 44.3
Ca_21148_v3 Cicer arietinum L. HOM05D000641 ORTHO05D000003 3.1e-09 65.5 70 42.9
Lsat_1_v5_gn_8_63840 Lactuca sativa HOM05D000641 ORTHO05D000944 3.1e-09 65.5 73 42.5
Medtr4g130490 Medicago truncatula HOM05D000641 ORTHO05D000944 3.1e-09 65.5 70 42.9
Psat7g006320 Pisum sativum HOM05D000641 ORTHO05D000944 3.1e-09 65.5 70 42.9
Potri.006G181700 Populus trichocarpa HOM05D000641 ORTHO05D000944 3.1e-09 65.5 70 44.3
TWI34G0421 Tripterygium wilfordii HOM05D000641 ORTHO05D000944 3.1e-09 65.5 73 41.1
Ah.09g228770 Amaranthus hybridus HOM05D000001 ORTHO05D000003 4.1e-09 65.1 70 44.3
Duzib187G0132 Durio zibethinus HOM05D000641 ORTHO05D000944 4.1e-09 65.1 74 45.9
Phvul.003G154300 Phaseolus vulgaris HOM05D000641 ORTHO05D000944 4.1e-09 65.1 78 42.3
Cpa.g.sc46.181 Carica papaya HOM05D000641 ORTHO05D000944 5.3e-09 64.7 69 44.9
Duzib150G0605 Durio zibethinus HOM05D000641 ORTHO05D000944 5.3e-09 64.7 70 41.4
VMungo1215G3247 Vigna mungo HOM05D000641 ORTHO05D000944 5.3e-09 64.7 70 45.7
AUR62025351 Chenopodium quinoa HOM05D000641 ORTHO05D000944 6.9e-09 64.3 70 42.9
Duzib168G1759 Durio zibethinus HOM05D000641 ORTHO05D000944 6.9e-09 64.3 70 44.3
Glyma.02G206000 Glycine max HOM05D000641 ORTHO05D000944 6.9e-09 64.3 70 44.3
BcaC09g51865 Brassica carinata HOM05D000641 ORTHO05D000944 9.1e-09 63.9 70 47.1
A01p07410 Brassica napus HOM05D000001 ORTHO05D000003 9.1e-09 63.9 70 47.1
BolC1t00804H Brassica oleracea HOM05D000001 ORTHO05D000003 9.1e-09 63.9 70 47.1
BraA01t00690Z Brassica rapa HOM05D000001 ORTHO05D000003 9.1e-09 63.9 70 47.1
MD02G1005400 Malus domestica HOM05D000641 ORTHO05D000944 9.1e-09 63.9 70 44.3
Hund08938 Selenicereus undatus HOM05D000641 ORTHO05D000944 9.1e-09 63.9 73 41.1
Lsat_1_v5_gn_5_89401 Lactuca sativa HOM05D000641 ORTHO05D000944 1.2e-08 63.5 70 44.3
Lj4g0016087 Lotus japonicus HOM05D000641 ORTHO05D000944 1.2e-08 63.5 70 45.7
A03p60260 Brassica napus HOM05D000001 ORTHO05D000003 1.5e-08 63.2 70 44.3
BraA03t15069Z Brassica rapa HOM05D000641 ORTHO05D000944 1.5e-08 63.2 70 44.3
Peaxi162Scf00062g00126 Petunia axillaris HOM05D000641 ORTHO05D000944 1.5e-08 63.2 70 47.1
arahy.Tifrunner.gnm1.ann1.E98L7U Arachis hypogaea HOM05D000001 ORTHO05D000003 2.0e-08 62.8 70 40.0
Dinv41356 Davidia involucrata HOM05D000641 ORTHO05D000944 2.0e-08 62.8 70 47.1
arahy.Tifrunner.gnm1.ann1.M4RUY8 Arachis hypogaea HOM05D000641 ORTHO05D000944 2.6e-08 62.4 70 40.0
Cc09_g00010 Coffea canephora HOM05D000641 ORTHO05D007351 2.6e-08 62.4 102 36.3
Gohir.A08G236200 Gossypium hirsutum HOM05D000641 ORTHO05D000944 2.6e-08 62.4 70 42.9
Gohir.D08G256800 Gossypium hirsutum HOM05D000641 ORTHO05D000944 2.6e-08 62.4 70 42.9
Gorai.004G273800 Gossypium raimondii HOM05D000641 ORTHO05D000944 2.6e-08 62.4 70 42.9
MD15G1149900 Malus domestica HOM05D000641 ORTHO05D000944 2.6e-08 62.4 70 42.9
Manes.14G143616 Manihot esculenta HOM05D000641 ORTHO05D000944 2.6e-08 62.4 70 42.9
Rhsim01G0027000 Rhododendron simsii HOM05D000641 ORTHO05D000944 2.6e-08 62.4 71 42.3
AL7G21410 Arabidopsis lyrata HOM05D000641 ORTHO05D000944 3.4e-08 62.0 70 44.3
AT4G30710 Arabidopsis thaliana HOM05D000641 ORTHO05D000944 3.4e-08 62.0 70 44.3
BcaNung02745 Brassica carinata HOM05D000641 ORTHO05D000944 3.4e-08 62.0 70 44.3
BolC7t46277H Brassica oleracea HOM05D000641 ORTHO05D000944 3.4e-08 62.0 70 44.3
Carub.0007s0977 Capsella rubella HOM05D000641 ORTHO05D000944 3.4e-08 62.0 73 42.5
Ciclev10007765m.g Citrus clementina HOM05D000641 ORTHO05D000944 3.4e-08 62.0 71 39.4
Haze_19157 Corylus avellana HOM05D000641 ORTHO05D000944 3.4e-08 62.0 70 42.9
FvH4_1g00660 Fragaria vesca HOM05D000641 ORTHO05D000944 3.4e-08 62.0 70 42.9
FAN23G2400 Fragaria x ananassa HOM05D000641 ORTHO05D000944 3.4e-08 62.0 70 42.9
Lalb_Chr07g0179951 Lupinus albus HOM05D000641 ORTHO05D000944 3.4e-08 62.0 70 38.6
Sp7g28620 Schrenkiella parvula HOM05D000641 ORTHO05D000944 3.4e-08 62.0 70 44.3
vmacro16783 Vaccinium macrocarpon HOM05D000641 ORTHO05D000944 3.4e-08 62.0 70 41.4
MSTRG.19660 Avicennia marina HOM05D000641 ORTHO05D000944 4.5e-08 61.6 82 37.8
MBI15_g27188_MAGBIO Magnolia biondii HOM05D000641 ORTHO05D000944 4.5e-08 61.6 70 45.7
RcHm_v2.0_Chr2g0085281 Rosa chinensis HOM05D000641 ORTHO05D000944 4.5e-08 61.6 70 41.4
Sabra06G0138500 Salix brachista HOM05D000641 ORTHO05D000944 4.5e-08 61.6 70 41.4
THA.LOC104803914 Tarenaya hassleriana HOM05D000641 ORTHO05D000944 4.5e-08 61.6 70 42.9
AUR62031341 Chenopodium quinoa HOM05D000641 ORTHO05D000944 5.9e-08 61.2 76 40.8
Migut.K00306 Erythranthe guttata HOM05D000641 ORTHO05D000944 5.9e-08 61.2 73 37.0
Hma1.2p1_0222F.1_g093800 Hydrangea macrophylla HOM05D000641 ORTHO05D000944 5.9e-08 61.2 70 42.9
Zm00001eb257690 Zea mays HOM05D000641 ORTHO05D000944 5.9e-08 61.2 90 36.7
Aa31LG2G19650 Aethionema arabicum HOM05D000641 ORTHO05D000944 7.7e-08 60.8 70 44.3
Cfa020800 Carpinus fangiana HOM05D000641 ORTHO05D000944 7.7e-08 60.8 70 42.9
Peaxi162Scf00401g00324 Petunia axillaris HOM05D000641 ORTHO05D000944 7.7e-08 60.8 104 38.5
Solyc07g005860.3 Solanum lycopersicum HOM05D000641 ORTHO05D000944 7.7e-08 60.8 103 36.9
Sopen07g001960 Solanum pennellii HOM05D000641 ORTHO05D000944 7.7e-08 60.8 103 36.9
PGSC0003DMG400011200 Solanum tuberosum HOM05D000641 ORTHO05D000944 7.7e-08 60.8 103 36.9
FAN28G1534 Fragaria x ananassa HOM05D000641 ORTHO05D000944 1.0e-07 60.5 70 42.9
Glyma.17G072000 Glycine max HOM05D000641 ORTHO05D000944 1.0e-07 60.5 70 41.4
TWI63G0168 Tripterygium wilfordii HOM05D000641 ORTHO05D000944 1.0e-07 60.5 105 33.3
Zm00001eb192500 Zea mays HOM05D000641 ORTHO05D000944 1.0e-07 60.5 73 41.1
Cc06_g14640 Coffea canephora HOM05D000641 ORTHO05D000944 1.3e-07 60.1 70 40.0
Glyma.04G155000 Glycine max HOM05D000641 ORTHO05D000944 1.3e-07 60.1 70 38.6
HanXRQChr10g0313701 Helianthus annuus HOM05D000641 ORTHO05D000944 1.3e-07 60.1 70 41.4
Lj6g0002398 Lotus japonicus HOM05D000641 ORTHO05D000944 1.3e-07 60.1 70 40.0
Actinidia24373 Actinidia chinensis HOM05D000641 ORTHO05D000944 1.7e-07 59.7 70 40.0
C07p58180 Brassica napus HOM05D000641 ORTHO05D000944 1.7e-07 59.7 70 42.9
CANSAT11G2459 Cannabis sativa HOM05D000641 ORTHO05D000944 1.7e-07 59.7 71 39.4
Eucgr.C02506 Eucalyptus grandis HOM05D000641 ORTHO05D000944 1.7e-07 59.7 73 38.4
Lalb_Chr13g0300731 Lupinus albus HOM05D000641 ORTHO05D000944 1.7e-07 59.7 64 40.6
Ah.14g084540 Amaranthus hybridus HOM05D000641 ORTHO05D000944 2.9e-07 58.9 70 41.4
Thhalv10000102m.g Eutrema salsugineum HOM05D000641 ORTHO05D000944 2.9e-07 58.9 70 44.3
Hma1.2p1_2085F.1_g313700 Hydrangea macrophylla HOM05D000641 ORTHO05D000944 2.9e-07 58.9 74 40.5
Potri.018G103800 Populus trichocarpa HOM05D000641 ORTHO05D000944 2.9e-07 58.9 70 38.6
Sc14g0002540 Simmondsia chinensis HOM05D000641 ORTHO05D000944 2.9e-07 58.9 103 34.0
DCAR_019412 Daucus carota HOM05D000641 ORTHO05D000944 3.8e-07 58.5 73 38.4
Thhalv10024652m.g Eutrema salsugineum HOM05D000641 ORTHO05D000944 3.8e-07 58.5 70 41.4
Lj7A462T54 Lonicera japonica HOM05D000641 ORTHO05D000944 3.8e-07 58.5 64 42.2
Nitab4.5_0002611g0050 Nicotiana tabacum HOM05D000641 ORTHO05D000944 3.8e-07 58.5 104 35.6
Oeu054264.1 Olea europaea HOM05D000641 ORTHO05D000944 3.8e-07 58.5 69 40.6
PSO017G3898 Papaver somniferum HOM05D000641 ORTHO05D000944 3.8e-07 58.5 73 39.7
PSO170G4859 Papaver somniferum HOM05D000641 ORTHO05D000944 3.8e-07 58.5 70 41.4
Phvul.009G194900 Phaseolus vulgaris HOM05D000641 ORTHO05D000944 3.8e-07 58.5 69 42.0
PGR042G3584 Punica granatum HOM05D000641 ORTHO05D000944 3.8e-07 58.5 70 42.9
Actinidia38310 Actinidia chinensis HOM05D000641 ORTHO05D000944 5.0e-07 58.2 73 38.4
ATR0019G047 Amborella trichopoda HOM05D000641 ORTHO05D000944 5.0e-07 58.2 73 35.6
AT2G24070 Arabidopsis thaliana HOM05D000641 ORTHO05D000944 5.0e-07 58.2 70 42.9
Carub.0004s0324 Capsella rubella HOM05D000641 ORTHO05D000944 5.0e-07 58.2 70 42.9
ECA234G1172 Erigeron canadensis HOM05D000641 ORTHO05D000944 5.0e-07 58.2 70 42.9
FAN23G1679 Fragaria x ananassa HOM05D000641 ORTHO05D000944 5.0e-07 58.2 69 40.6
FAN26G3212 Fragaria x ananassa HOM05D000641 ORTHO05D000944 5.0e-07 58.2 69 40.6
Lj2A592G35 Lonicera japonica HOM05D000641 ORTHO05D000944 5.0e-07 58.2 70 40.0
VMungo1309G2297 Vigna mungo HOM05D000641 ORTHO05D000944 5.0e-07 58.2 69 42.0
AL4G14120 Arabidopsis lyrata HOM05D000641 ORTHO05D000944 6.5e-07 57.8 70 42.9
MSTRG.10710 Avicennia marina HOM05D000641 ORTHO05D000944 6.5e-07 57.8 73 32.9
ClCG02G014370 Citrullus lanatus HOM05D000641 ORTHO05D000944 6.5e-07 57.8 121 28.9
Nn1g04601 Nelumbo nucifera HOM05D000641 ORTHO05D000944 6.5e-07 57.8 70 40.0
Nn5g30541 Nelumbo nucifera HOM05D000641 ORTHO05D000944 6.5e-07 57.8 74 40.5
CSS0020203 Camellia sinensis var. sinensis HOM05D000641 ORTHO05D000944 8.5e-07 57.4 71 36.6
CSS0026813 Camellia sinensis var. sinensis HOM05D000641 ORTHO05D000944 8.5e-07 57.4 71 36.6
CiPaw.15G165600 Carya illinoinensis HOM05D000641 ORTHO05D000944 8.5e-07 57.4 70 40.0
Glyma.06G225100 Glycine max HOM05D000641 ORTHO05D000944 8.5e-07 57.4 70 37.1
unitig_748.g7197 Utricularia gibba HOM05D000641 ORTHO05D000944 8.5e-07 57.4 73 37.0
BcaNung04826 Brassica carinata HOM05D000641 ORTHO05D000944 1.1e-06 57.0 66 42.4
CiPaw.16G107500 Carya illinoinensis HOM05D000641 ORTHO05D000944 1.1e-06 57.0 70 38.6
AUR62022490 Chenopodium quinoa HOM05D000641 ORTHO05D000944 1.1e-06 57.0 74 37.8
GSVIVG01037854001 Vitis vinifera HOM05D000641 ORTHO05D000944 1.1e-06 57.0 70 44.3
Aa31LG7G12690 Aethionema arabicum HOM05D000641 ORTHO05D000944 1.4e-06 56.6 70 41.4
Ah.09g231970 Amaranthus hybridus HOM05D000641 ORTHO05D000944 1.4e-06 56.6 91 30.8
BcaC07g40963 Brassica carinata HOM05D000641 ORTHO05D000944 1.4e-06 56.6 70 41.4
C08p39570 Brassica napus HOM05D000641 ORTHO05D000944 1.4e-06 56.6 70 41.4
BolC8t51530H Brassica oleracea HOM05D000641 ORTHO05D000944 1.4e-06 56.6 70 41.4
CAN.G160.24 Capsicum annuum HOM05D000641 ORTHO05D000944 1.4e-06 56.6 103 35.9
CARHR118280 Cardamine hirsuta HOM05D000641 ORTHO05D000944 1.4e-06 56.6 70 41.4
Cfa013676 Carpinus fangiana HOM05D000641 ORTHO05D000944 1.4e-06 56.6 88 36.4
Haze_22313 Corylus avellana HOM05D000641 ORTHO05D000944 1.4e-06 56.6 69 42.0
Lj4C69T12 Lonicera japonica HOM05D000641 ORTHO05D000944 1.4e-06 56.6 70 38.6
QL02p093853 Quercus lobata HOM05D000641 ORTHO05D000944 1.4e-06 56.6 67 37.3
TAR381G0627 Trochodendron aralioides HOM05D000641 ORTHO05D000944 1.4e-06 56.6 70 40.0
EL10Ac8g19367 Beta vulgaris HOM05D000641 ORTHO05D000944 1.9e-06 56.2 91 30.8
MELO3C004124.2 Cucumis melo HOM05D000641 ORTHO05D000944 1.9e-06 56.2 121 28.1
Hma1.2p1_1023F.1_g248870 Hydrangea macrophylla HOM05D000641 ORTHO05D000944 1.9e-06 56.2 79 39.2
Hma1.2p1_1773F.1_g301690 Hydrangea macrophylla HOM05D000641 ORTHO05D000944 1.9e-06 56.2 79 39.2
PSO675G6084 Papaver somniferum HOM05D000641 ORTHO05D000944 1.9e-06 56.2 83 32.5
SEGI_38472 Sequoiadendron giganteum HOM05D000641 ORTHO05D000944 1.9e-06 56.2 81 33.3
TAR625G0781 Trochodendron aralioides HOM05D000641 ORTHO05D000944 1.9e-06 56.2 70 40.0
A08p03490 Brassica napus HOM05D000641 ORTHO05D000944 2.5e-06 55.8 107 35.5
A09p56620 Brassica napus HOM05D000641 ORTHO05D000944 2.5e-06 55.8 70 41.4
BraA08t32383Z Brassica rapa HOM05D000641 ORTHO05D000944 2.5e-06 55.8 107 35.5
BraA09t41053Z Brassica rapa HOM05D000641 ORTHO05D000944 2.5e-06 55.8 70 41.4
Oeu011143.1 Olea europaea HOM05D000641 ORTHO05D000944 2.5e-06 55.8 78 37.2
PSO111G0022 Papaver somniferum HOM05D000641 ORTHO05D000944 2.5e-06 55.8 70 40.0
Phvul.001G026600 Phaseolus vulgaris HOM05D000641 ORTHO05D000944 2.5e-06 55.8 99 32.3
Sp4g02980 Schrenkiella parvula HOM05D000641 ORTHO05D000944 2.5e-06 55.8 58 44.8
GSVIVG01009361001 Vitis vinifera HOM05D000641 ORTHO05D000944 2.5e-06 55.8 87 33.3
Actinidia38099 Actinidia chinensis HOM05D000641 ORTHO05D000944 3.2e-06 55.5 73 37.0
CsaV3_2G007630 Cucumis sativus L. HOM05D000641 ORTHO05D000944 3.2e-06 55.5 121 28.1
Sabra18G0089200 Salix brachista HOM05D000641 ORTHO05D000944 3.2e-06 55.5 69 36.2
Sed0003952 Sechium edule HOM05D000641 ORTHO05D000944 3.2e-06 55.5 70 37.1
Hund12604 Selenicereus undatus HOM05D000641 ORTHO05D000944 3.2e-06 55.5 91 30.8
MSTRG.6155 Avicennia marina HOM05D000641 ORTHO05D000944 4.2e-06 55.1 73 37.0
SalBow1G3871 Salvia bowleyana HOM05D000641 ORTHO05D000944 4.2e-06 55.1 66 36.4
Thecc.02G115000 Theobroma cacao HOM05D000641 ORTHO05D000944 4.2e-06 55.1 66 42.4
Actinidia00383 Actinidia chinensis HOM05D000641 ORTHO05D000944 5.5e-06 54.7 112 30.4
MSTRG.14577 Avicennia marina HOM05D000641 ORTHO05D007351 5.5e-06 54.7 74 36.5
C03p89360 Brassica napus HOM05D000641 ORTHO05D000944 5.5e-06 54.7 107 35.5
BraA01t03593Z Brassica rapa HOM05D000641 ORTHO05D000944 5.5e-06 54.7 112 33.0
Gohir.D13G045000 Gossypium hirsutum HOM05D000641 ORTHO05D000944 5.5e-06 54.7 73 35.6
Gorai.013G049800 Gossypium raimondii HOM05D000641 ORTHO05D000944 5.5e-06 54.7 73 35.6
Lalb_Chr08g0234241 Lupinus albus HOM05D000641 ORTHO05D000944 5.5e-06 54.7 63 39.7
PGR031G0418 Punica granatum HOM05D000641 ORTHO05D000944 5.5e-06 54.7 78 38.5
BcaC09g48922 Brassica carinata HOM05D000641 ORTHO05D000944 7.2e-06 54.3 107 33.6
C01p44540 Brassica napus HOM05D000641 ORTHO05D000944 7.2e-06 54.3 107 33.6
BolC1t04420H Brassica oleracea HOM05D000641 ORTHO05D000944 7.2e-06 54.3 107 33.6
Carub.0003s1941 Capsella rubella HOM05D000641 ORTHO05D000944 7.2e-06 54.3 112 30.4
Cpa.g.sc106.71 Carica papaya HOM05D000641 ORTHO05D000944 7.2e-06 54.3 74 40.5
CiPaw.07G176500 Carya illinoinensis HOM05D000641 ORTHO05D000944 7.2e-06 54.3 69 40.6
Sed0019586 Sechium edule HOM05D000641 ORTHO05D000944 7.2e-06 54.3 78 37.2
Cc10_g05630 Coffea canephora HOM05D000641 ORTHO05D000944 9.4e-06 53.9 103 32.0
COL.COLO4_32535 Corchorus olitorius HOM05D000641 ORTHO05D000944 9.4e-06 53.9 74 39.2
Lj5g0009394 Lotus japonicus HOM05D000641 ORTHO05D000944 9.4e-06 53.9 82 36.6
Oeu015339.1 Olea europaea HOM05D000641 ORTHO05D000944 9.4e-06 53.9 70 38.6
Os02g0794300 Oryza sativa ssp. japonica HOM05D000641 ORTHO05D000944 9.4e-06 53.9 77 36.4
Potri.001G295800 Populus trichocarpa HOM05D000641 ORTHO05D000944 9.4e-06 53.9 73 37.0
Sed0000800 Sechium edule HOM05D000641 ORTHO05D000944 9.4e-06 53.9 74 37.8
Zm00001eb007470 Zea mays HOM05D000641 ORTHO05D000944 9.4e-06 53.9 70 40.0


User provided reference genes

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