Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0244521 Helianthus annuus HOM05D005762 ORTHO05D006823 5.8e-101 370.9 191 100.0
HanXRQChr03g0066031 Helianthus annuus HOM05D005762 ORTHO05D006823 1.3e-89 333.2 191 89.5
Lsat_1_v5_gn_7_49601 Lactuca sativa HOM05D005762 ORTHO05D006823 1.5e-88 329.7 191 91.1
ECA240G2400 Erigeron canadensis HOM05D006258 ORTHO05D007961 5.8e-77 291.2 173 86.7
Nitab4.5_0000032g0060 Nicotiana tabacum HOM05D005762 ORTHO05D006823 6.4e-68 261.2 192 71.9
Sopen04g027270 Solanum pennellii HOM05D005762 ORTHO05D006823 3.2e-67 258.8 190 70.5
PGSC0003DMG400024111 Solanum tuberosum HOM05D005762 ORTHO05D006823 4.2e-67 258.5 190 70.5
DCAR_014801 Daucus carota HOM05D005762 ORTHO05D006823 5.4e-67 258.1 191 72.3
Solyc04g071310.3 Solanum lycopersicum HOM05D005762 ORTHO05D006823 1.6e-66 256.5 190 70.0
Peaxi162Scf00765g00313 Petunia axillaris HOM05D005762 ORTHO05D006823 3.0e-65 252.3 190 71.1
Hma1.2p1_0222F.1_g093870 Hydrangea macrophylla HOM05D005762 ORTHO05D006823 3.9e-65 251.9 195 69.7
SGA_v2.0_scaffold118G32537 Striga asiatica HOM05D005762 ORTHO05D006823 5.1e-65 251.5 193 70.5
DCAR_019992 Daucus carota HOM05D005762 ORTHO05D006823 1.1e-64 250.4 191 69.6
SalBow7G3475 Salvia bowleyana HOM05D005762 ORTHO05D006823 1.1e-64 250.4 192 68.2
TAR625G0504 Trochodendron aralioides HOM05D005762 ORTHO05D006823 5.6e-64 248.1 196 66.8
MSTRG.25456 Avicennia marina HOM05D005762 ORTHO05D006823 7.4e-64 247.7 195 68.2
CAN.G268.6 Capsicum annuum HOM05D005762 ORTHO05D006823 3.6e-63 245.4 191 69.1
Dinv42823 Davidia involucrata HOM05D005762 ORTHO05D006823 1.4e-62 243.4 195 67.7
Dinv43277 Davidia involucrata HOM05D005762 ORTHO05D006823 1.4e-62 243.4 195 67.7
ClCG06G012630 Citrullus lanatus HOM05D005762 ORTHO05D006823 2.0e-61 239.6 190 67.9
Cc00_g06610 Coffea canephora HOM05D005762 ORTHO05D006823 2.6e-61 239.2 196 66.8
Prupe.7G266400 Prunus persica HOM05D005762 ORTHO05D006823 2.6e-61 239.2 193 65.3
Actinidia24370 Actinidia chinensis HOM05D000058 ORTHO05D000077 3.4e-61 238.8 196 68.4
Rhsim01G0024500 Rhododendron simsii HOM05D005762 ORTHO05D006823 1.7e-60 236.5 197 68.5
Nn8g40046 Nelumbo nucifera HOM05D005762 ORTHO05D006823 1.1e-59 233.8 183 68.9
Sed0007428 Sechium edule HOM05D005762 ORTHO05D006823 2.4e-59 232.6 190 65.3
PSO761G0310 Papaver somniferum HOM05D005762 ORTHO05D006823 9.3e-59 230.7 193 67.9
Gorai.008G090500 Gossypium raimondii HOM05D005762 ORTHO05D006823 1.6e-58 229.9 194 65.5
Sed0006648 Sechium edule HOM05D005762 ORTHO05D006823 2.1e-58 229.6 191 66.0
Manes.14G112900 Manihot esculenta HOM05D005762 ORTHO05D006823 2.7e-58 229.2 193 68.9
vmacro06054 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 3.5e-58 228.8 194 66.5
Duzib147G0575 Durio zibethinus HOM05D005762 ORTHO05D006823 6.0e-58 228.0 194 63.9
Gohir.D12G082500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 2.3e-57 226.1 193 64.8
Gohir.A12G083500 Gossypium hirsutum HOM05D005762 ORTHO05D006823 3.0e-57 225.7 193 64.8
CSS0036647 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 3.9e-57 225.3 183 69.9
MELO3C010201.2 Cucumis melo HOM05D005762 ORTHO05D006823 3.9e-57 225.3 190 66.3
GSVIVG01023684001 Vitis vinifera HOM05D005762 ORTHO05D006823 3.9e-57 225.3 194 64.9
Atru.chr7.1163 Acer truncatum HOM05D005762 ORTHO05D006823 8.7e-57 224.2 193 63.7
MBI02_g32399_MAGBIO Magnolia biondii HOM05D005762 ORTHO05D006823 1.1e-56 223.8 199 61.8
Eucgr.C02513 Eucalyptus grandis HOM05D005762 ORTHO05D006823 1.5e-56 223.4 194 63.9
Eucgr.L01546 Eucalyptus grandis HOM05D005762 ORTHO05D006823 1.5e-56 223.4 194 63.9
TWI34G1522 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 1.9e-56 223.0 195 63.6
COL.COLO4_27292 Corchorus olitorius HOM05D005762 ORTHO05D006823 2.5e-56 222.6 194 62.4
Migut.C01281 Erythranthe guttata HOM05D005762 ORTHO05D006823 2.5e-56 222.6 194 63.4
Aqoxy6G02656 Aquilegia oxysepala HOM05D005762 ORTHO05D006823 3.3e-56 222.2 197 61.9
Thecc.01G095900 Theobroma cacao HOM05D005762 ORTHO05D006823 5.6e-56 221.5 194 62.4
Lj2g0011355 Lotus japonicus HOM05D005762 ORTHO05D006823 9.6e-56 220.7 192 64.6
ATR0767G248 Amborella trichopoda HOM05D005762 ORTHO05D006823 8.1e-55 217.6 194 60.3
unitig_0.g206 Utricularia gibba HOM05D005762 ORTHO05D006823 8.1e-55 217.6 193 62.7
arahy.Tifrunner.gnm1.ann1.0D8FTQ Arachis hypogaea HOM05D005762 ORTHO05D006823 3.1e-54 215.7 187 64.2
arahy.Tifrunner.gnm1.ann1.3SV7H4 Arachis hypogaea HOM05D005762 ORTHO05D006823 3.1e-54 215.7 187 64.7
PSO170G6399 Papaver somniferum HOM05D005762 ORTHO05D006823 5.3e-54 214.9 193 64.2
PSO357G0319 Papaver somniferum HOM05D005762 ORTHO05D006823 5.3e-54 214.9 193 64.2
TWI63G0575 Tripterygium wilfordii HOM05D005762 ORTHO05D006823 5.3e-54 214.9 193 60.6
CDE02G2562 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 6.9e-54 214.5 194 60.8
CSS0014952 Camellia sinensis var. sinensis HOM05D005762 ORTHO05D006823 9.0e-54 214.2 190 64.7
HPP92_021390 Vanilla planifolia HOM05D005762 ORTHO05D006823 9.0e-54 214.2 199 60.3
SGA_v2.0_scaffold69G23111 Striga asiatica HOM05D005762 ORTHO05D006823 1.2e-53 213.8 214 58.4
CiPaw.16G107100 Carya illinoinensis HOM05D005762 ORTHO05D006823 2.0e-53 213.0 193 62.7
Lalb_Chr16g0380631 Lupinus albus HOM05D005762 ORTHO05D006823 3.4e-53 212.2 196 62.8
unitig_60.g25712 Utricularia gibba HOM05D005762 ORTHO05D006823 3.4e-53 212.2 194 59.8
Lalb_Chr05g0215351 Lupinus albus HOM05D005762 ORTHO05D006823 7.6e-53 211.1 194 62.9
Glyma.19G036900 Glycine max HOM05D005762 ORTHO05D006823 6.5e-52 208.0 193 62.2
Phvul.004G044600 Phaseolus vulgaris HOM05D005762 ORTHO05D006823 6.5e-52 208.0 191 59.7
Ciclev10009604m.g Citrus clementina HOM05D005762 ORTHO05D006823 1.4e-51 206.8 197 62.4
QL02p094110 Quercus lobata HOM05D005762 ORTHO05D006823 5.5e-51 204.9 191 60.2
Lj9A721G60 Lonicera japonica HOM05D005762 ORTHO05D006823 2.1e-50 203.0 147 74.8
PGR102G1062 Punica granatum HOM05D005762 ORTHO05D006823 2.7e-50 202.6 194 58.2
Haze_19144 Corylus avellana HOM05D005762 ORTHO05D006823 3.5e-50 202.2 182 63.7
CDE06G1965 Ceratophyllum demersum HOM05D005762 ORTHO05D006823 7.9e-50 201.1 194 57.2
FvH4_1g00560 Fragaria vesca HOM05D005762 ORTHO05D006823 7.9e-50 201.1 191 59.2
MD15G1148500 Malus domestica HOM05D005762 ORTHO05D006823 1.9e-48 196.4 196 57.1
Sabra18G0088700 Salix brachista HOM05D000058 ORTHO05D000077 5.7e-48 194.9 185 60.0
VMungo1215G2009 Vigna mungo HOM05D005762 ORTHO05D006823 9.6e-48 194.1 171 63.2
FAN26G0640 Fragaria x ananassa HOM05D005762 ORTHO05D006823 2.1e-47 193.0 191 57.6
Lj2g0017040 Lotus japonicus HOM05D005762 ORTHO05D006823 2.1e-47 193.0 182 61.0
Potri.018G103200 Populus trichocarpa HOM05D005762 ORTHO05D006823 2.1e-47 193.0 193 59.1
Os06g0171700 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 6.3e-47 191.4 196 55.1
Potri.006G180900 Populus trichocarpa HOM05D005762 ORTHO05D006823 1.1e-46 190.7 189 56.6
Psat1g057520 Pisum sativum HOM05D005762 ORTHO05D006823 1.4e-46 190.3 194 58.8
RcHm_v2.0_Chr2g0085191 Rosa chinensis HOM05D005762 ORTHO05D006823 1.4e-46 190.3 189 56.6
Sabra06G0137900 Salix brachista HOM05D005762 ORTHO05D006823 4.1e-46 188.7 193 56.5
THA.LOC104814737 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 6.9e-46 188.0 194 54.6
Medtr6g006900 Medicago truncatula HOM05D005762 ORTHO05D006823 1.5e-45 186.8 188 55.9
Zm00001eb215170 Zea mays HOM05D005762 ORTHO05D006823 1.5e-45 186.8 197 54.8
Zm00001eb375400 Zea mays HOM05D005762 ORTHO05D006823 1.5e-45 186.8 197 54.8
Dinv41344 Davidia involucrata HOM05D005762 ORTHO05D006823 2.6e-45 186.0 149 67.8
TPR.G14135 Trifolium pratense HOM05D005762 ORTHO05D006823 4.5e-45 185.3 188 55.3
BcaB03g12662 Brassica carinata HOM05D005762 ORTHO05D006823 1.3e-44 183.7 194 54.1
Os11g0473100 Oryza sativa ssp. japonica HOM05D005762 ORTHO05D006823 2.2e-44 183.0 191 56.0
Ca_04188_v3 Cicer arietinum L. HOM05D005762 ORTHO05D006823 3.2e-43 179.1 188 54.8
Sp7g28690 Schrenkiella parvula HOM05D005762 ORTHO05D006823 3.2e-43 179.1 194 52.6
CANSAT11G0529 Cannabis sativa HOM05D005762 ORTHO05D006823 2.1e-42 176.4 190 53.2
SEGI_01916 Sequoiadendron giganteum HOM05D005762 ORTHO05D006823 1.3e-41 173.7 193 54.4
Cpa.g.sc199.22 Carica papaya HOM05D005762 ORTHO05D006823 2.3e-41 172.9 179 58.1
AagrBONN_evm.TU.Sc2ySwM_344.3285 Anthoceros agrestis HOM05D005762 ORTHO05D006823 3.9e-41 172.2 187 49.7
BraA08t33867Z Brassica rapa HOM05D005762 ORTHO05D006823 6.3e-39 164.9 195 50.8
Rhsim03G0259100 Rhododendron simsii HOM05D005762 ORTHO05D006823 6.3e-39 164.9 147 63.9
AT4G30820 Arabidopsis thaliana HOM05D005762 ORTHO05D006823 8.2e-39 164.5 195 51.3
CARHR238660 Cardamine hirsuta HOM05D005762 ORTHO05D006823 1.1e-38 164.1 199 48.2
C03p88490 Brassica napus HOM05D005762 ORTHO05D006823 6.9e-38 161.4 190 50.5
BcaNung02738 Brassica carinata HOM05D005762 ORTHO05D006823 4.5e-37 158.7 207 46.9
SHI02837 Sapria himalayana HOM05D005762 ORTHO05D006823 5.9e-37 158.3 192 54.2
Carub.0007s0975 Capsella rubella HOM05D005762 ORTHO05D006823 1.1e-35 154.1 194 50.5
Mapoly0025s0086 Marchantia polymorpha HOM05D005762 ORTHO05D006823 1.9e-35 153.3 189 44.4
A08p19060 Brassica napus HOM05D005762 ORTHO05D006823 7.2e-35 151.4 223 44.8
Sc18g0003110 Simmondsia chinensis HOM05D005762 ORTHO05D006823 9.4e-35 151.0 147 61.2
BcaC01g01136 Brassica carinata HOM05D005762 ORTHO05D006823 1.6e-34 150.2 190 47.9
C07p58230 Brassica napus HOM05D000058 ORTHO05D000077 1.0e-33 147.5 191 45.0
BolC7t46281H Brassica oleracea HOM05D000058 ORTHO05D000077 1.0e-33 147.5 191 45.0
Oeu026957.1 Olea europaea HOM05D005762 ORTHO05D006823 1.4e-33 147.1 123 66.7
BcaNung01558 Brassica carinata HOM05D005762 ORTHO05D006823 2.3e-33 146.4 213 43.2
SMO356G0316 Selaginella moellendorffii HOM05D005762 ORTHO05D006823 1.7e-31 140.2 186 44.1
A03p60360 Brassica napus HOM05D005762 ORTHO05D006823 2.2e-31 139.8 190 44.7
Pp3c7_18190 Physcomitrium patens HOM05D005762 ORTHO05D006823 2.2e-31 139.8 186 43.0
EL10Ac8g18914 Beta vulgaris HOM05D005762 ORTHO05D006823 1.1e-27 127.5 83 77.1
AUR62025367 Chenopodium quinoa HOM05D005762 ORTHO05D006823 1.1e-27 127.5 83 75.9
BraA03t15075Z Brassica rapa HOM05D005762 ORTHO05D006823 1.9e-27 126.7 167 46.1
AUR62028383 Chenopodium quinoa HOM05D005762 ORTHO05D006823 2.5e-27 126.3 83 74.7
vmacro13053 Vaccinium macrocarpon HOM05D005762 ORTHO05D006823 5.5e-27 125.2 72 88.9
THA.LOC104804493 Tarenaya hassleriana HOM05D005762 ORTHO05D006823 2.7e-26 122.9 141 51.8
CBR_g45648 Chara braunii HOM05D005762 ORTHO05D006823 6.1e-26 121.7 197 43.1
Cfa020788 Carpinus fangiana HOM05D005762 ORTHO05D006823 3.3e-24 115.9 110 60.0
Thhalv10026542m.g Eutrema salsugineum HOM05D005762 ORTHO05D006823 3.3e-24 115.9 148 49.3
AL7G21310 Arabidopsis lyrata HOM05D005762 ORTHO05D006823 1.7e-23 113.6 149 49.0
SGA_v2.0_scaffold63G21769 Striga asiatica HOM05D005762 ORTHO05D006823 2.2e-23 113.2 79 74.7
Nitab4.5_0008759g0010 Nicotiana tabacum HOM05D005762 ORTHO05D006823 8.2e-23 111.3 98 60.2
BolC3t21157H Brassica oleracea HOM05D005762 ORTHO05D006823 7.0e-22 108.2 155 45.8
vmacro13054 Vaccinium macrocarpon HOM05D006258 ORTHO05D007961 6.5e-20 101.7 87 63.2
CBR_g3032 Chara braunii HOM05D005762 ORTHO05D006823 1.1e-19 100.9 80 67.5
Rhsim01G0060600 Rhododendron simsii HOM05D005762 ORTHO05D006823 4.2e-19 99.0 109 59.6
Oeu064081.1 Olea europaea HOM05D005762 ORTHO05D006823 3.0e-17 92.8 60 80.0
CsaV3_1G029180 Cucumis sativus L. HOM05D005762 ORTHO05D006823 8.8e-17 91.3 79 64.6
PSO357G0231 Papaver somniferum HOM05D005762 ORTHO05D006823 2.6e-16 89.7 132 45.5
Dinv09756 Davidia involucrata HOM05D000667 ORTHO05D002614 5.7e-16 88.6 90 54.4
SMO004G0001 Selaginella moellendorffii HOM05D028982 ORTHO05D006823 8.2e-15 84.7 73 56.2
MCO02G015 Micromonas commoda HOM05D005762 ORTHO05D006823 1.6e-13 80.5 87 50.6
Actinidia26604 Actinidia chinensis HOM05D005762 ORTHO05D006823 5.9e-13 78.6 77 62.3
Aa31LG2G19570 Aethionema arabicum HOM05D005762 ORTHO05D006823 1.6e-10 70.5 91 48.4
Cre16.g672753 Chlamydomonas reinhardtii HOM05D005762 ORTHO05D006823 4.7e-10 68.9 176 29.5
MD02G1004700 Malus domestica HOM05D005762 ORTHO05D006823 4.4e-08 62.4 51 56.9


User provided reference genes

Program Settings