Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr09g0244001 Helianthus annuus HOM05D004859 ORTHO05D005807 3.8e-54 214.5 106 100.0
HanXRQChr11g0333601 Helianthus annuus HOM05D004859 ORTHO05D005807 3.5e-47 191.4 106 87.7
ECA238G2179 Erigeron canadensis HOM05D004859 ORTHO05D005807 1.7e-46 189.1 106 85.8
Lsat_1_v5_gn_2_18260 Lactuca sativa HOM05D004859 ORTHO05D005807 1.5e-45 186.0 107 84.1
ECA233G5366 Erigeron canadensis HOM05D004859 ORTHO05D005807 6.1e-44 180.6 106 80.2
Aa31LG5G13260 Aethionema arabicum HOM05D004859 ORTHO05D005807 8.0e-44 180.3 107 83.2
CARHR076800 Cardamine hirsuta HOM05D004859 ORTHO05D005807 8.0e-44 180.3 106 81.1
Carub.0003s0189 Capsella rubella HOM05D004859 ORTHO05D005807 2.3e-43 178.7 106 79.2
Sp3g01820 Schrenkiella parvula HOM05D004859 ORTHO05D005807 4.0e-43 177.9 106 79.2
BcaC05g30507 Brassica carinata HOM05D004859 ORTHO05D005807 5.2e-43 177.6 106 79.2
BcaC05g30510 Brassica carinata HOM05D004859 ORTHO05D005807 8.8e-43 176.8 106 78.3
C09p75910 Brassica napus HOM05D004859 ORTHO05D005807 8.8e-43 176.8 106 78.3
AL3G12200 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 3.4e-42 174.9 106 78.3
BolC5t35066H Brassica oleracea HOM05D004859 ORTHO05D005807 3.4e-42 174.9 106 78.3
AT3G02790 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 1.7e-41 172.6 106 77.4
Sed0011478 Sechium edule HOM05D004859 ORTHO05D005807 2.2e-41 172.2 106 77.4
Lalb_Chr03g0038491 Lupinus albus HOM05D004859 ORTHO05D005807 3.7e-41 171.4 106 74.5
Rhsim09G0129900 Rhododendron simsii HOM05D004859 ORTHO05D005807 3.7e-41 171.4 105 78.1
PSO675G0300 Papaver somniferum HOM05D004859 ORTHO05D005807 1.8e-40 169.1 107 75.7
PSO675G8596 Papaver somniferum HOM05D004859 ORTHO05D005807 1.8e-40 169.1 107 75.7
Lalb_Chr01g0020391 Lupinus albus HOM05D004859 ORTHO05D005807 3.1e-40 168.3 106 74.5
RcHm_v2.0_Chr3g0447891 Rosa chinensis HOM05D004859 ORTHO05D005807 1.2e-39 166.4 106 75.5
MELO3C010059.2 Cucumis melo HOM05D004859 ORTHO05D005807 2.7e-39 165.2 106 73.6
ClCG03G010710 Citrullus lanatus HOM05D004859 ORTHO05D005807 3.5e-39 164.9 106 74.5
Lsat_1_v5_gn_8_2360 Lactuca sativa HOM05D004859 ORTHO05D005807 3.5e-39 164.9 105 74.3
THA.LOC104802953 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 4.5e-39 164.5 106 75.5
CsaV3_1G044540 Cucumis sativus L. HOM05D004859 ORTHO05D005807 5.9e-39 164.1 106 71.7
TWI18G1000 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 5.9e-39 164.1 106 76.4
Ah.06g195490 Amaranthus hybridus HOM05D004859 ORTHO05D005807 7.8e-39 163.7 106 74.5
Sc06g0005050 Simmondsia chinensis HOM05D004859 ORTHO05D005807 7.8e-39 163.7 106 75.5
Ca_07986_v3 Cicer arietinum L. HOM05D004859 ORTHO05D005807 1.3e-38 162.9 106 74.5
unitig_749.g13492 Utricularia gibba HOM05D004859 ORTHO05D005807 1.3e-38 162.9 106 73.6
ATR0568G125 Amborella trichopoda HOM05D004859 ORTHO05D005807 1.7e-38 162.5 107 74.8
Eucgr.H01388 Eucalyptus grandis HOM05D004859 ORTHO05D005807 1.7e-38 162.5 108 74.1
TWI36G0708 Tripterygium wilfordii HOM05D004859 ORTHO05D005807 1.7e-38 162.5 106 74.5
THA.LOC104827174 Tarenaya hassleriana HOM05D004859 ORTHO05D005807 2.3e-38 162.2 106 73.6
Sc16g0010390 Simmondsia chinensis HOM05D004859 ORTHO05D005807 2.9e-38 161.8 106 74.5
Ciclev10013411m.g Citrus clementina HOM05D004859 ORTHO05D005807 3.8e-38 161.4 106 70.8
FAN05G4796 Fragaria x ananassa HOM05D004859 ORTHO05D005807 3.8e-38 161.4 106 73.6
CSS0045397 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 5.0e-38 161.0 107 73.8
A10p22730 Brassica napus HOM05D004859 ORTHO05D005807 6.6e-38 160.6 106 73.6
BraA10t44336Z Brassica rapa HOM05D004859 ORTHO05D005807 6.6e-38 160.6 106 73.6
CANSAT54G1839 Cannabis sativa HOM05D004859 ORTHO05D005807 6.6e-38 160.6 106 72.6
CDE12G0839 Ceratophyllum demersum HOM05D004859 ORTHO05D005807 6.6e-38 160.6 106 75.5
DCAR_024584 Daucus carota HOM05D004859 ORTHO05D005807 6.6e-38 160.6 108 74.1
Oeu062049.1 Olea europaea HOM05D004859 ORTHO05D005807 6.6e-38 160.6 106 71.7
unitig_26.g9580 Utricularia gibba HOM05D000798 ORTHO05D000659 6.6e-38 160.6 106 71.7
Pp3c26_1250 Physcomitrium patens HOM05D004859 ORTHO05D005807 8.6e-38 160.2 106 70.8
PGR031G2676 Punica granatum HOM05D004859 ORTHO05D005807 8.6e-38 160.2 106 74.5
Aqoxy7G00303 Aquilegia oxysepala HOM05D004859 ORTHO05D005807 1.1e-37 159.8 107 72.9
Potri.013G086400 Populus trichocarpa HOM05D004859 ORTHO05D005807 1.1e-37 159.8 106 72.6
SEGI_19955 Sequoiadendron giganteum HOM05D004859 ORTHO05D005807 1.1e-37 159.8 106 74.5
CANSAT35G0417 Cannabis sativa HOM05D004859 ORTHO05D005807 1.5e-37 159.5 106 68.9
DCAR_029983 Daucus carota HOM05D004859 ORTHO05D005807 1.5e-37 159.5 106 72.6
Glyma.09G250600 Glycine max HOM05D004859 ORTHO05D005807 1.5e-37 159.5 106 71.7
TAR629G2726 Trochodendron aralioides HOM05D004859 ORTHO05D005807 1.5e-37 159.5 107 74.8
BraA02t05326Z Brassica rapa HOM05D004859 ORTHO05D005807 1.9e-37 159.1 106 73.6
Cpa.g.sc39.7 Carica papaya HOM05D004859 ORTHO05D005807 1.9e-37 159.1 106 72.6
Duzib177G0866 Durio zibethinus HOM05D004859 ORTHO05D005807 1.9e-37 159.1 106 72.6
Gohir.A13G154200 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.9e-37 159.1 106 72.6
Gohir.D13G158900 Gossypium hirsutum HOM05D004859 ORTHO05D005807 1.9e-37 159.1 106 72.6
Gorai.013G179600 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.9e-37 159.1 106 72.6
VMungo1383G1359 Vigna mungo HOM05D004859 ORTHO05D005807 1.9e-37 159.1 106 70.8
Duzib128G0817 Durio zibethinus HOM05D004859 ORTHO05D005807 2.5e-37 158.7 106 72.6
BcaC03g18492 Brassica carinata HOM05D004859 ORTHO05D005807 3.3e-37 158.3 107 72.9
A02p03550 Brassica napus HOM05D004859 ORTHO05D005807 3.3e-37 158.3 106 73.6
BcaB08g36850 Brassica carinata HOM05D004859 ORTHO05D005807 4.3e-37 157.9 106 72.6
BcaC04g18876 Brassica carinata HOM05D004859 ORTHO05D005807 4.3e-37 157.9 106 72.6
C09p60710 Brassica napus HOM05D004859 ORTHO05D005807 4.3e-37 157.9 106 72.6
BolC9t58902H Brassica oleracea HOM05D004859 ORTHO05D005807 4.3e-37 157.9 106 72.6
CARHR196760 Cardamine hirsuta HOM05D004859 ORTHO05D005807 4.3e-37 157.9 107 72.9
Gohir.A05G391600 Gossypium hirsutum HOM05D004859 ORTHO05D005807 4.3e-37 157.9 106 70.8
Sp6g27710 Schrenkiella parvula HOM05D004859 ORTHO05D005807 4.3e-37 157.9 106 72.6
BcaB01g04980 Brassica carinata HOM05D004859 ORTHO05D005807 5.6e-37 157.5 106 71.7
BolC3t13398H Brassica oleracea HOM05D004859 ORTHO05D005807 5.6e-37 157.5 106 71.7
CSS0011817 Camellia sinensis var. sinensis HOM05D004859 ORTHO05D005807 5.6e-37 157.5 105 74.3
CiPaw.07G080000 Carya illinoinensis HOM05D004859 ORTHO05D005807 5.6e-37 157.5 106 72.6
Thhalv10015095m.g Eutrema salsugineum HOM05D004859 ORTHO05D005807 5.6e-37 157.5 106 72.6
Nn7g37400 Nelumbo nucifera HOM05D004859 ORTHO05D005807 5.6e-37 157.5 106 72.6
GSVIVG01019111001 Vitis vinifera HOM05D004859 ORTHO05D005807 5.6e-37 157.5 105 72.4
Glyma.18G241900 Glycine max HOM05D004859 ORTHO05D005807 7.3e-37 157.1 106 71.7
Gohir.D04G025700 Gossypium hirsutum HOM05D004859 ORTHO05D005807 7.3e-37 157.1 106 70.8
Gorai.012G028300 Gossypium raimondii HOM05D004859 ORTHO05D005807 7.3e-37 157.1 106 70.8
Hma1.2p1_0171F.1_g075510 Hydrangea macrophylla HOM05D004859 ORTHO05D005807 7.3e-37 157.1 106 74.5
Lj1g0018632 Lotus japonicus HOM05D004859 ORTHO05D005807 7.3e-37 157.1 105 69.5
Nitab4.5_0001435g0020 Nicotiana tabacum HOM05D004859 ORTHO05D005807 7.3e-37 157.1 107 70.1
Oeu020252.1 Olea europaea HOM05D004859 ORTHO05D005807 7.3e-37 157.1 106 71.7
Peaxi162Scf00344g00092 Petunia axillaris HOM05D004859 ORTHO05D005807 7.3e-37 157.1 107 72.0
A03p07800 Brassica napus HOM05D004859 ORTHO05D005807 9.5e-37 156.8 109 72.5
BraA03t10107Z Brassica rapa HOM05D004859 ORTHO05D005807 9.5e-37 156.8 109 72.5
CAN.G217.12 Capsicum annuum HOM05D004859 ORTHO05D005807 9.5e-37 156.8 106 67.0
Migut.F02136 Erythranthe guttata HOM05D004859 ORTHO05D005807 9.5e-37 156.8 106 69.8
Medtr7g079990 Medicago truncatula HOM05D004859 ORTHO05D005807 9.5e-37 156.8 107 72.0
SalBow6G1022 Salvia bowleyana HOM05D004859 ORTHO05D005807 9.5e-37 156.8 106 70.8
Aa31LG11G13190 Aethionema arabicum HOM05D004859 ORTHO05D005807 1.2e-36 156.4 106 72.6
FvH4_6g00510 Fragaria vesca HOM05D004859 ORTHO05D005807 1.2e-36 156.4 108 72.2
Solyc04g056350.1 Solanum lycopersicum HOM05D004859 ORTHO05D005807 1.2e-36 156.4 106 67.9
AUR62000312 Chenopodium quinoa HOM05D004859 ORTHO05D005807 1.6e-36 156.0 106 69.8
FAN09G3430 Fragaria x ananassa HOM05D004859 ORTHO05D005807 1.6e-36 156.0 107 72.0
FAN14G1059 Fragaria x ananassa HOM05D004859 ORTHO05D005807 1.6e-36 156.0 107 72.0
Gorai.004G261900 Gossypium raimondii HOM05D004859 ORTHO05D005807 1.6e-36 156.0 106 70.8
Sopen04g025250 Solanum pennellii HOM05D004859 ORTHO05D005807 1.6e-36 156.0 106 67.0
Gohir.D08G245400 Gossypium hirsutum HOM05D004859 ORTHO05D005807 2.1e-36 155.6 106 70.8
Psat3g138280 Pisum sativum HOM05D004859 ORTHO05D005807 2.1e-36 155.6 107 71.0
AUR62006657 Chenopodium quinoa HOM05D004859 ORTHO05D005807 2.8e-36 155.2 106 69.8
HPP92_025926 Vanilla planifolia HOM05D004859 ORTHO05D005807 2.8e-36 155.2 105 73.3
BolC2t06754H Brassica oleracea HOM05D004859 ORTHO05D005807 3.6e-36 154.8 106 71.7
MBI18_g38869_MAGBIO Magnolia biondii HOM05D004859 ORTHO05D005807 3.6e-36 154.8 106 71.7
Nitab4.5_0000083g0160 Nicotiana tabacum HOM05D004859 ORTHO05D005807 4.7e-36 154.5 107 68.2
Atru.chr12.1788 Acer truncatum HOM05D004859 ORTHO05D005807 6.1e-36 154.1 107 68.2
TPR.G30708 Trifolium pratense HOM05D004859 ORTHO05D005807 6.1e-36 154.1 106 70.8
AL6G27410 Arabidopsis lyrata HOM05D004859 ORTHO05D005807 8.0e-36 153.7 107 71.0
AT5G16470 Arabidopsis thaliana HOM05D004859 ORTHO05D005807 8.0e-36 153.7 107 71.0
Carub.0006s1467 Capsella rubella HOM05D004859 ORTHO05D005807 8.0e-36 153.7 107 71.0
COL.COLO4_19821 Corchorus olitorius HOM05D004859 ORTHO05D005807 8.0e-36 153.7 107 71.0
Manes.13G005600 Manihot esculenta HOM05D004859 ORTHO05D005807 8.0e-36 153.7 106 70.8
Pp3c9_1130 Physcomitrium patens HOM05D004859 ORTHO05D005807 8.0e-36 153.7 106 69.8
Manes.12G005900 Manihot esculenta HOM05D004859 ORTHO05D005807 1.0e-35 153.3 106 70.8
PGSC0003DMG400007259 Solanum tuberosum HOM05D004859 ORTHO05D005807 1.0e-35 153.3 106 67.9
Thecc.05G199300 Theobroma cacao HOM05D004859 ORTHO05D005807 1.0e-35 153.3 107 71.0
Cc09_g03620 Coffea canephora HOM05D004859 ORTHO05D005807 1.4e-35 152.9 111 68.5
MD04G1244600 Malus domestica HOM05D004859 ORTHO05D005807 1.4e-35 152.9 112 67.9
MD12G1260500 Malus domestica HOM05D004859 ORTHO05D005807 1.4e-35 152.9 111 67.6
Cfa006265 Carpinus fangiana HOM05D004859 ORTHO05D005807 1.8e-35 152.5 106 70.8
Potri.019G053500 Populus trichocarpa HOM05D004859 ORTHO05D005807 1.8e-35 152.5 104 70.2
Phvul.008G054200 Phaseolus vulgaris HOM05D004859 ORTHO05D005807 3.0e-35 151.8 109 67.9
Prupe.6G361200 Prunus persica HOM05D004859 ORTHO05D005807 3.0e-35 151.8 116 66.4
QL01p048380 Quercus lobata HOM05D004859 ORTHO05D005807 3.0e-35 151.8 106 71.7
Gohir.A08G225000 Gossypium hirsutum HOM05D004859 ORTHO05D005807 8.9e-35 150.2 103 68.9
EL10Ac4g09966 Beta vulgaris HOM05D004859 ORTHO05D005807 1.5e-34 149.4 101 70.3
Pp3c15_1090 Physcomitrium patens HOM05D004859 ORTHO05D005807 1.5e-34 149.4 106 67.0
Zm00001eb272650 Zea mays HOM05D004859 ORTHO05D005807 2.0e-34 149.1 109 67.0
Os06g0708600 Oryza sativa ssp. japonica HOM05D004859 ORTHO05D005807 2.6e-34 148.7 115 65.2
SMO361G0285 Selaginella moellendorffii HOM05D004859 ORTHO05D005807 4.4e-34 147.9 106 66.0
Haze_04552 Corylus avellana HOM05D004859 ORTHO05D005807 5.7e-34 147.5 106 68.9
Mapoly0153s0037 Marchantia polymorpha HOM05D004859 ORTHO05D005807 1.7e-33 146.0 107 67.3
Actinidia38902 Actinidia chinensis HOM05D004859 ORTHO05D005807 2.2e-33 145.6 88 77.3
SHI13720 Sapria himalayana HOM05D004859 ORTHO05D005807 2.2e-33 145.6 105 67.6
Sabra13G0077700 Salix brachista HOM05D004859 ORTHO05D005807 4.9e-33 144.4 98 72.4
Zm00001eb227470 Zea mays HOM05D004859 ORTHO05D005807 6.4e-33 144.1 119 61.3
VMungo0464G0653 Vigna mungo HOM05D004859 ORTHO05D005807 1.8e-27 125.9 100 59.0
A05p44330 Brassica napus HOM05D004859 ORTHO05D005807 8.9e-27 123.6 69 84.1
BraA06t23289Z Brassica rapa HOM05D004859 ORTHO05D005807 8.9e-27 123.6 69 84.1
Cre09.g416500 Chlamydomonas reinhardtii HOM05D004859 ORTHO05D005807 3.0e-22 108.6 104 54.8
RcHm_v2.0_Chr1g0316641 Rosa chinensis HOM05D004859 ORTHO05D005807 1.5e-21 106.3 72 68.1
PRCOL_00002520 Prasinoderma coloniale HOM05D004859 ORTHO05D005807 7.5e-18 94.0 103 48.5
Nn1g09361 Nelumbo nucifera HOM05D004859 ORTHO05D005807 2.2e-17 92.4 52 84.6
Nn1g01054 Nelumbo nucifera HOM05D004859 ORTHO05D005807 9.2e-16 87.0 56 73.2
AUR62006656 Chenopodium quinoa HOM05D004859 ORTHO05D005807 1.7e-14 82.8 82 50.0
BcaB08g36851 Brassica carinata HOM05D004859 ORTHO05D005807 5.6e-13 77.8 106 47.2
SHI22764 Sapria himalayana HOM05D004859 ORTHO05D005807 2.2e-09 65.9 72 48.6
SHI07073 Sapria himalayana HOM05D004859 ORTHO05D005807 8.6e-06 53.9 76 40.8


User provided reference genes

Program Settings