Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 3.0e-128 461.8 230 100.0
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 2.0e-63 246.5 185 74.1
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 3.4e-63 245.7 185 73.5
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 3.7e-54 215.7 185 62.7
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.1e-53 214.2 185 62.7
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 1.9e-53 213.4 167 70.1
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 1.9e-53 213.4 185 62.2
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 9.2e-53 211.1 187 61.0
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 9.2e-53 211.1 187 61.0
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 9.2e-53 211.1 175 66.3
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 1.6e-52 210.3 175 67.4
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 3.5e-52 209.1 169 67.5
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 3.5e-52 209.1 185 61.6
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.0e-51 207.6 175 65.1
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.7e-51 206.8 185 60.0
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 2.3e-51 206.5 175 62.9
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 1.9e-50 203.4 185 59.5
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 3.3e-50 202.6 188 59.6
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 4.3e-50 202.2 188 59.6
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 5.6e-50 201.8 185 60.0
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 9.5e-50 201.1 186 60.2
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 1.6e-49 200.3 185 58.4
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.1e-49 199.9 173 64.7
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 2.8e-49 199.5 186 61.8
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.8e-49 199.5 173 64.2
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 3.6e-49 199.1 188 59.0
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 3.6e-49 199.1 188 59.0
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 4.7e-49 198.7 190 57.4
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 4.7e-49 198.7 173 64.2
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 6.2e-49 198.4 190 58.4
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 6.2e-49 198.4 175 61.1
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 8.0e-49 198.0 173 61.8
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 1.1e-48 197.6 184 60.3
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 1.4e-48 197.2 173 61.8
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 1.4e-48 197.2 184 60.9
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 2.3e-48 196.4 175 61.1
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 3.1e-48 196.1 173 63.0
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 3.1e-48 196.1 173 63.0
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 3.1e-48 196.1 186 58.6
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 3.1e-48 196.1 185 57.8
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.0e-48 195.7 173 62.4
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.0e-48 195.7 173 63.0
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 5.2e-48 195.3 173 61.3
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 5.2e-48 195.3 173 61.8
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 6.8e-48 194.9 185 57.8
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 8.9e-48 194.5 185 57.8
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 1.2e-47 194.1 185 59.5
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.0e-47 193.4 183 58.5
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 2.0e-47 193.4 173 60.1
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 2.0e-47 193.4 176 59.7
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 3.4e-47 192.6 185 55.1
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.4e-47 192.6 173 60.1
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 3.4e-47 192.6 173 60.1
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 4.4e-47 192.2 173 61.3
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 4.4e-47 192.2 185 57.8
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 5.8e-47 191.8 185 56.2
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 7.5e-47 191.4 171 59.6
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 7.5e-47 191.4 189 57.1
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 9.8e-47 191.0 185 58.4
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.3e-46 190.7 186 56.5
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 1.3e-46 190.7 185 57.8
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.3e-46 190.7 185 57.3
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.7e-46 190.3 183 56.8
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.7e-46 190.3 186 55.9
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 1.7e-46 190.3 173 61.3
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 2.2e-46 189.9 184 57.1
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 2.9e-46 189.5 185 55.7
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 3.7e-46 189.1 173 59.5
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 8.3e-46 188.0 174 59.2
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 1.1e-45 187.6 173 58.4
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 1.9e-45 186.8 171 59.1
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.4e-45 186.4 173 60.7
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 7.0e-45 184.9 175 57.7
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 9.2e-45 184.5 173 58.4
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 1.2e-44 184.1 171 59.1
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.6e-44 183.7 185 55.7
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 1.6e-44 183.7 169 58.6
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 2.1e-44 183.3 174 57.5
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 2.1e-44 183.3 174 57.5
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 2.1e-44 183.3 169 58.6
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 4.6e-44 182.2 171 56.7
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 4.6e-44 182.2 172 59.9
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 6.0e-44 181.8 179 58.1
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 7.8e-44 181.4 185 53.0
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 7.8e-44 181.4 185 54.1
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 1.0e-43 181.0 174 57.5
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 1.0e-43 181.0 174 57.5
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 2.3e-43 179.9 174 56.9
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 2.3e-43 179.9 183 54.6
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 3.0e-43 179.5 171 57.3
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 3.0e-43 179.5 191 54.5
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 3.0e-43 179.5 191 54.5
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 3.0e-43 179.5 171 57.3
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 5.1e-43 178.7 173 58.4
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 5.1e-43 178.7 210 51.0
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 6.6e-43 178.3 185 54.6
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 6.6e-43 178.3 185 54.6
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 6.6e-43 178.3 185 54.6
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 1.1e-42 177.6 174 56.9
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 1.1e-42 177.6 185 55.7
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.1e-42 177.6 185 54.6
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.5e-42 177.2 185 54.6
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.5e-42 176.4 169 56.2
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 3.3e-42 176.0 171 57.3
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 3.3e-42 176.0 171 57.3
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.3e-42 176.0 188 53.2
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 4.3e-42 175.6 182 53.8
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 4.3e-42 175.6 171 56.7
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 4.3e-42 175.6 171 56.7
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 5.6e-42 175.3 184 55.4
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 1.2e-41 174.1 174 54.6
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 3.6e-41 172.6 186 51.1
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 2.3e-40 169.9 174 54.0
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 2.3e-40 169.9 184 53.8
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 8.9e-40 167.9 184 53.3
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 1.5e-39 167.2 167 53.9
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 5.8e-39 165.2 163 54.0
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 1.7e-38 163.7 144 61.8
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 3.7e-38 162.5 164 56.7
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.1e-37 159.1 170 56.5
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.1e-34 151.0 128 62.5
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 2.1e-33 146.7 157 55.4
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.1e-32 144.4 115 65.2
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 4.4e-31 139.0 146 52.7
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 4.2e-29 132.5 104 64.4
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 7.8e-28 128.3 155 47.1
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 6.6e-27 125.2 137 48.9
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 6.6e-27 125.2 160 46.9
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 2.8e-25 119.8 139 50.4
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 9.0e-24 114.8 139 46.8
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 2.9e-22 109.8 148 43.2
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 8.4e-22 108.2 172 41.3
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 2.1e-20 103.6 135 43.7
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 1.0e-19 101.3 140 43.6
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 3.0e-19 99.8 174 40.2
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 3.8e-14 82.8 118 41.5
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 1.3e-11 74.3 111 43.2
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 2.9e-06 56.6 93 39.8


User provided reference genes

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