Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0214581 Helianthus annuus HOM05D005486 ORTHO05D007411 0.0e+00 1227.6 671 100.0
ECA233G2219 Erigeron canadensis HOM05D005486 ORTHO05D007411 5.5e-130 469.2 722 46.0
Lsat_1_v5_gn_8_38000 Lactuca sativa HOM05D005486 ORTHO05D007411 1.8e-69 268.1 679 36.5
ECA234G1298 Erigeron canadensis HOM05D005486 ORTHO05D007411 1.6e-60 238.4 336 46.1
HanXRQChr16g0527001 Helianthus annuus HOM05D005486 ORTHO05D007411 3.9e-51 207.2 293 45.7
vmacro10503 Vaccinium macrocarpon HOM05D005486 ORTHO05D007411 2.5e-50 204.5 266 48.5
Dinv16542 Davidia involucrata HOM05D005486 ORTHO05D007411 4.0e-48 197.2 391 39.9
Actinidia16599 Actinidia chinensis HOM05D005486 ORTHO05D007411 1.5e-47 195.3 381 40.2
Hma1.2p1_1391F.1_g280160 Hydrangea macrophylla HOM05D005486 ORTHO05D007411 7.6e-47 193.0 354 40.1
Peaxi162Scf00198g00414 Petunia axillaris HOM05D005486 ORTHO05D007411 7.6e-47 193.0 348 39.4
CSS0021505 Camellia sinensis var. sinensis HOM05D005486 ORTHO05D007411 6.4e-46 189.9 363 39.1
TWI31G0478 Tripterygium wilfordii HOM05D005486 ORTHO05D007411 1.9e-45 188.3 364 40.7
Migut.E00279 Erythranthe guttata HOM05D005486 ORTHO05D007411 4.1e-45 187.2 330 40.0
Nitab4.5_0003073g0050 Nicotiana tabacum HOM05D005486 ORTHO05D007411 1.2e-44 185.7 379 37.5
ClCG00G003720 Citrullus lanatus HOM05D005486 ORTHO05D007411 1.6e-44 185.3 352 38.9
ClCG05G023220 Citrullus lanatus HOM05D005486 ORTHO05D007411 1.6e-44 185.3 352 38.9
Potri.008G111100 Populus trichocarpa HOM05D005486 ORTHO05D007411 3.5e-44 184.1 396 37.9
Thecc.02G364500 Theobroma cacao HOM05D005486 ORTHO05D007411 7.8e-44 183.0 455 36.9
CiPaw.05G117000 Carya illinoinensis HOM05D005486 ORTHO05D007411 1.0e-43 182.6 366 38.0
CsaV3_5G033800 Cucumis sativus L. HOM05D005486 ORTHO05D007411 1.0e-43 182.6 354 40.1
Oeu056581.1 Olea europaea HOM05D005486 ORTHO05D007411 1.0e-43 182.6 348 39.7
Sed0017603 Sechium edule HOM05D005486 ORTHO05D007411 1.3e-43 182.2 350 40.3
Rhsim09G0115000 Rhododendron simsii HOM05D005486 ORTHO05D007411 1.7e-43 181.8 381 38.6
TAR622G0197 Trochodendron aralioides HOM05D005486 ORTHO05D007411 1.7e-43 181.8 376 38.0
GSVIVG01012004001 Vitis vinifera HOM05D005486 ORTHO05D007411 3.9e-43 180.6 370 38.4
Gohir.A12G173400 Gossypium hirsutum HOM05D005486 ORTHO05D007411 5.1e-43 180.3 453 35.8
SalBow8G5042 Salvia bowleyana HOM05D005486 ORTHO05D007411 1.5e-42 178.7 353 37.7
Gohir.D12G176000 Gossypium hirsutum HOM05D005486 ORTHO05D007411 1.9e-42 178.3 386 37.6
Nn3g17656 Nelumbo nucifera HOM05D005486 ORTHO05D007411 1.9e-42 178.3 357 38.4
Potri.010G132600 Populus trichocarpa HOM05D005486 ORTHO05D007411 4.3e-42 177.2 400 36.0
Gorai.008G188400 Gossypium raimondii HOM05D005486 ORTHO05D007411 5.6e-42 176.8 386 37.6
MD13G1050300 Malus domestica HOM05D005486 ORTHO05D007411 5.6e-42 176.8 409 34.7
Nitab4.5_0010558g0010 Nicotiana tabacum HOM05D005486 ORTHO05D007411 7.3e-42 176.4 412 35.0
PGSC0003DMG400025103 Solanum tuberosum HOM05D005486 ORTHO05D007411 7.3e-42 176.4 346 37.6
MELO3C012197.2 Cucumis melo HOM05D005486 ORTHO05D007411 9.6e-42 176.0 469 36.2
Sabra08G0084000 Salix brachista HOM05D005486 ORTHO05D007411 9.6e-42 176.0 475 34.3
Lsat_1_v5_gn_4_20360 Lactuca sativa HOM05D005486 ORTHO05D007411 1.2e-41 175.6 292 42.8
PSO782G0099 Papaver somniferum HOM05D005486 ORTHO05D007411 3.6e-41 174.1 376 37.0
Prupe.1G301600 Prunus persica HOM05D005486 ORTHO05D007411 4.7e-41 173.7 484 33.3
CANSAT64G2054 Cannabis sativa HOM05D005486 ORTHO05D007411 8.1e-41 172.9 330 38.8
Duzib251G0619 Durio zibethinus HOM05D005486 ORTHO05D007411 8.1e-41 172.9 357 38.1
MD16G1051000 Malus domestica HOM05D005486 ORTHO05D007411 1.8e-40 171.8 407 33.7
CAN.G184.62 Capsicum annuum HOM05D005486 ORTHO05D007411 2.4e-40 171.4 397 35.3
Sopen05g005890 Solanum pennellii HOM05D005486 ORTHO05D007411 2.4e-40 171.4 371 37.2
Ciclev10030527m.g Citrus clementina HOM05D005486 ORTHO05D007411 5.2e-40 170.2 376 37.5
PGR119G1261 Punica granatum HOM05D005486 ORTHO05D007411 5.2e-40 170.2 404 37.4
MBI16_g36049_MAGBIO Magnolia biondii HOM05D005486 ORTHO05D007411 8.9e-40 169.5 382 36.6
Haze_11801 Corylus avellana HOM05D005486 ORTHO05D007411 1.2e-39 169.1 408 36.3
Sabra10G0101300 Salix brachista HOM05D005486 ORTHO05D007411 1.2e-39 169.1 428 34.6
TWI79G0683 Tripterygium wilfordii HOM05D005486 ORTHO05D007411 1.5e-39 168.7 373 36.2
Manes.06G075700 Manihot esculenta HOM05D005486 ORTHO05D007411 3.4e-39 167.5 394 36.3
PSO063G5162 Papaver somniferum HOM05D005486 ORTHO05D007411 4.4e-39 167.2 376 36.2
Cfa008789 Carpinus fangiana HOM05D005486 ORTHO05D007411 9.9e-39 166.0 385 35.8
MSTRG.13492 Avicennia marina HOM05D005486 ORTHO05D007411 1.7e-38 165.2 391 35.3
Aqoxy3G03843 Aquilegia oxysepala HOM05D005486 ORTHO05D007411 2.2e-38 164.9 358 35.2
Atru.chr11.1428 Acer truncatum HOM05D005486 ORTHO05D007411 3.8e-38 164.1 493 31.4
SGA_v2.0_scaffold59G20635 Striga asiatica HOM05D005486 ORTHO05D007411 3.8e-38 164.1 488 32.4
Eucgr.G02380 Eucalyptus grandis HOM05D005486 ORTHO05D007411 1.9e-37 161.8 359 36.5
COL.COLO4_11242 Corchorus olitorius HOM05D005486 ORTHO05D007411 2.4e-37 161.4 464 32.8
QL03p044642 Quercus lobata HOM05D005486 ORTHO05D007411 3.2e-37 161.0 486 31.1
Sc14g0007640 Simmondsia chinensis HOM05D005486 ORTHO05D007411 3.2e-37 161.0 371 35.3
RcHm_v2.0_Chr4g0436391 Rosa chinensis HOM05D005486 ORTHO05D007411 7.1e-37 159.8 508 31.3
Ca_07880_v3 Cicer arietinum L. HOM05D005486 ORTHO05D007411 2.1e-36 158.3 310 39.0
TAR629G0806 Trochodendron aralioides HOM05D005486 ORTHO05D007411 1.0e-35 156.0 412 33.7
Lalb_Chr10g0099591 Lupinus albus HOM05D005486 ORTHO05D007411 2.3e-35 154.8 368 36.4
VMungo1215G0217 Vigna mungo HOM05D005486 ORTHO05D007411 3.0e-35 154.5 351 37.3
FvH4_4g28440 Fragaria vesca HOM05D005486 ORTHO05D007411 6.6e-35 153.3 535 29.7
FAN12G0975 Fragaria x ananassa HOM05D005486 ORTHO05D007411 6.6e-35 153.3 535 29.7
Lj2g0014013 Lotus japonicus HOM05D005486 ORTHO05D007411 6.6e-35 153.3 360 36.4
A02p15280 Brassica napus HOM05D005486 ORTHO05D007411 1.9e-34 151.8 437 32.3
BcaB05g24405 Brassica carinata HOM05D005486 ORTHO05D007411 3.3e-34 151.0 435 32.4
BraA02t06590Z Brassica rapa HOM05D005486 ORTHO05D007411 7.3e-34 149.8 437 31.8
Glyma.01G092400 Glycine max HOM05D005486 ORTHO05D007411 9.6e-34 149.4 471 33.8
FAN17G1167 Fragaria x ananassa HOM05D005486 ORTHO05D007411 1.6e-33 148.7 544 29.8
Phvul.003G024300 Phaseolus vulgaris HOM05D005486 ORTHO05D007411 1.6e-33 148.7 364 35.7
CARHR061530 Cardamine hirsuta HOM05D005486 ORTHO05D007411 3.6e-33 147.5 439 33.7
AT1G68720 Arabidopsis thaliana HOM05D005486 ORTHO05D007411 8.1e-33 146.4 411 33.3
FAN07G1378 Fragaria x ananassa HOM05D005486 ORTHO05D007411 1.4e-32 145.6 540 29.4
C02p25130 Brassica napus HOM05D005486 ORTHO05D007411 1.8e-32 145.2 483 30.2
Thhalv10018020m.g Eutrema salsugineum HOM05D005486 ORTHO05D007411 1.8e-32 145.2 432 31.0
arahy.Tifrunner.gnm1.ann1.S5RRBC Arachis hypogaea HOM05D005486 ORTHO05D007411 3.1e-32 144.4 204 47.1
BcaC03g14978 Brassica carinata HOM05D005486 ORTHO05D007411 3.1e-32 144.4 484 30.2
BolC2t08592H Brassica oleracea HOM05D005486 ORTHO05D007411 3.1e-32 144.4 484 30.2
arahy.Tifrunner.gnm1.ann1.HYI70A Arachis hypogaea HOM05D005486 ORTHO05D007411 4.0e-32 144.1 204 46.6
Glyma.02G129800 Glycine max HOM05D005486 ORTHO05D007411 5.3e-32 143.7 547 30.3
DCAR_009846 Daucus carota HOM05D005486 ORTHO05D007411 9.0e-32 142.9 468 30.3
Medtr4g012000 Medicago truncatula HOM05D005486 ORTHO05D007411 1.2e-31 142.5 394 34.0
Psat2g089040 Pisum sativum HOM05D005486 ORTHO05D007411 7.6e-31 139.8 395 33.7
THA.LOC104808436 Tarenaya hassleriana HOM05D005486 ORTHO05D007411 7.6e-31 139.8 434 31.3
FAN22G2135 Fragaria x ananassa HOM05D005486 ORTHO05D007411 9.9e-31 139.4 537 29.4
Cc11_g10920 Coffea canephora HOM05D005486 ORTHO05D007411 2.9e-30 137.9 438 33.3
Lalb_Chr17g0341801 Lupinus albus HOM05D005486 ORTHO05D007411 2.9e-30 137.9 394 32.5
Sp5g23820 Schrenkiella parvula HOM05D005486 ORTHO05D007411 4.9e-30 137.1 481 30.4
Carub.0002s1526 Capsella rubella HOM05D005486 ORTHO05D007411 6.4e-30 136.7 439 31.2
CDE04G2499 Ceratophyllum demersum HOM05D005486 ORTHO05D007411 1.1e-29 136.0 103 66.0
Hund05782 Selenicereus undatus HOM05D005486 ORTHO05D007411 1.1e-29 136.0 167 47.9
Sc04g0006910 Simmondsia chinensis HOM05D005486 ORTHO05D007411 1.9e-29 135.2 348 34.2
AUR62007761 Chenopodium quinoa HOM05D005486 ORTHO05D007411 2.4e-29 134.8 366 31.4
Ah.02g127300 Amaranthus hybridus HOM05D005486 ORTHO05D007411 5.4e-29 133.7 345 33.6
Zm00001eb382160 Zea mays HOM05D005486 ORTHO05D007411 5.4e-29 133.7 122 57.4
unitig_27.g25227 Utricularia gibba HOM05D005486 ORTHO05D007411 9.3e-29 132.9 154 50.6
Os06g0489500 Oryza sativa ssp. japonica HOM05D005486 ORTHO05D007411 2.1e-28 131.7 127 54.3
Cpa.g.sc1.245 Carica papaya HOM05D005486 ORTHO05D007411 3.5e-28 131.0 650 31.7
TPR.G24201 Trifolium pratense HOM05D005486 ORTHO05D007411 1.0e-27 129.4 403 33.0
Aa31sc12G40 Aethionema arabicum HOM05D005486 ORTHO05D007411 3.0e-27 127.9 533 28.5
AUR62002956 Chenopodium quinoa HOM05D005486 ORTHO05D007411 8.7e-27 126.3 103 62.1
THA.LOC104801666 Tarenaya hassleriana HOM05D005486 ORTHO05D007411 1.9e-26 125.2 92 68.5
CDE03G0168 Ceratophyllum demersum HOM05D005486 ORTHO05D007411 1.4e-24 119.0 455 30.1
SEGI_38327 Sequoiadendron giganteum HOM05D005486 ORTHO05D007411 5.3e-24 117.1 99 56.6
EL10Ac6g14546 Beta vulgaris HOM05D005486 ORTHO05D007411 1.2e-23 115.9 289 36.7
ATR0618G023 Amborella trichopoda HOM05D005486 ORTHO05D007411 4.5e-23 114.0 550 27.8
Lj6A769T91 Lonicera japonica HOM05D005486 ORTHO05D007411 5.8e-23 113.6 67 80.6
Cc11_g10960 Coffea canephora HOM05D005486 ORTHO05D007411 2.7e-20 104.8 65 76.9
Mapoly0072s0096 Marchantia polymorpha HOM05D005486 ORTHO05D007411 9.0e-16 89.7 70 64.3
Actinidia32431 Actinidia chinensis HOM05D005486 ORTHO05D007411 5.5e-13 80.5 120 45.8
Pp3c9_12190 Physcomitrium patens HOM05D005486 ORTHO05D007411 2.7e-12 78.2 71 60.6
Solyc05g010100.4 Solanum lycopersicum HOM05D005486 ORTHO05D007411 2.7e-12 78.2 142 44.4
Pp3s196_80 Physcomitrium patens HOM05D005486 ORTHO05D003297 3.9e-11 74.3 67 53.7
Oeu041861.2 Olea europaea HOM05D005486 ORTHO05D007411 4.8e-09 67.4 112 41.1
Hma1.2p1_1391F.1_g280150 Hydrangea macrophylla HOM05D005486 ORTHO05D007411 1.5e-07 62.4 265 28.7
Cre13.g573300 Chlamydomonas reinhardtii HOM05D005486 ORTHO05D007411 5.8e-07 60.5 70 50.0
FvH4_4g07280 Fragaria vesca HOM05D003832 ORTHO05D004365 2.9e-06 58.2 77 45.5
FAN07G1538 Fragaria x ananassa HOM05D003811 ORTHO05D004470 2.9e-06 58.2 65 47.7
FAN12G0553 Fragaria x ananassa HOM05D003811 ORTHO05D004470 2.9e-06 58.2 77 45.5
Dinv16543 Davidia involucrata HOM05D005486 ORTHO05D007411 5.0e-06 57.4 311 26.4
Lj5A749G38 Lonicera japonica HOM05D003832 ORTHO05D004365 5.0e-06 57.4 58 51.7
RcHm_v2.0_Chr4g0399541 Rosa chinensis HOM05D003832 ORTHO05D004365 6.5e-06 57.0 77 45.5
Glyma.13G100600 Glycine max HOM05D003832 ORTHO05D004365 8.4e-06 56.6 53 52.8
RcHm_v2.0_Chr7g0180711 Rosa chinensis HOM05D003832 ORTHO05D004365 8.4e-06 56.6 77 44.2


User provided reference genes

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