Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.3e-232 809.3 393 100.0
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 7.0e-202 707.2 388 88.1
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 6.8e-197 690.6 394 84.3
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 5.7e-196 687.6 393 84.0
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 5.2e-189 664.5 393 81.2
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.1e-167 593.6 402 72.6
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.8e-165 586.3 406 70.2
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.8e-165 586.3 406 70.2
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.8e-165 586.3 404 71.0
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 2.0e-164 582.8 406 71.4
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 3.7e-163 578.6 400 70.0
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.2e-161 573.5 404 69.6
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 9.5e-159 563.9 406 69.5
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.6e-158 563.1 400 70.0
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.1e-158 562.8 404 68.3
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 4.7e-158 561.6 402 69.7
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.4e-157 560.1 401 69.6
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.4e-157 560.1 402 69.4
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.1e-157 558.9 404 68.3
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 5.2e-157 558.1 403 67.5
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 6.8e-157 557.8 404 67.6
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 2.6e-156 555.8 405 68.1
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.8e-156 554.7 404 68.1
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 9.9e-156 553.9 414 66.2
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.7e-155 553.1 399 68.9
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.7e-155 553.1 403 67.7
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.2e-155 552.7 402 67.9
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.8e-155 552.0 403 67.2
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 8.4e-155 550.8 402 67.9
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 8.4e-155 550.8 410 66.6
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.9e-154 549.7 406 68.2
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.1e-154 548.5 403 68.5
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 5.4e-154 548.1 401 68.8
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 5.4e-154 548.1 406 67.5
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 9.2e-154 547.4 402 67.4
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.2e-153 547.0 402 65.9
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.6e-153 546.6 402 67.9
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 2.7e-153 545.8 393 65.9
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.5e-153 545.4 400 68.5
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 3.5e-153 545.4 398 67.6
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 6.0e-153 544.7 401 67.8
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 7.8e-153 544.3 394 67.5
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.0e-152 543.9 406 67.0
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 3.9e-152 542.0 402 66.7
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 6.6e-152 541.2 401 67.6
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 8.6e-152 540.8 404 67.1
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.9e-151 539.7 403 66.3
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 1.9e-151 539.7 403 67.5
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 2.5e-151 539.3 402 65.7
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.3e-151 538.9 400 68.0
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 3.3e-151 538.9 402 65.7
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 5.6e-151 538.1 397 65.7
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 7.3e-151 537.7 402 65.9
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.2e-150 537.0 403 65.8
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.6e-150 536.6 408 65.2
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.6e-150 536.6 401 65.6
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 2.1e-150 536.2 434 63.4
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.1e-150 536.2 405 65.4
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 2.1e-150 536.2 405 65.7
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 3.6e-150 535.4 403 65.5
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 4.7e-150 535.0 406 65.3
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.4e-149 533.5 403 65.8
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 3.1e-149 532.3 401 64.8
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 5.2e-149 531.6 472 58.5
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 5.2e-149 531.6 403 65.0
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.5e-148 530.0 407 65.4
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.5e-148 530.0 402 65.4
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.5e-148 530.0 401 64.8
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.5e-148 530.0 401 64.8
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.0e-148 529.6 446 61.0
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 4.4e-148 528.5 418 64.6
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 7.6e-148 527.7 400 66.0
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 9.9e-148 527.3 435 62.1
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.8e-147 525.4 402 64.4
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 8.4e-147 524.2 350 72.0
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.9e-146 523.1 394 64.2
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.9e-146 523.1 398 66.1
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.9e-146 523.1 403 64.8
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-145 520.4 413 63.9
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 2.1e-145 519.6 430 62.3
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 2.7e-145 519.2 404 65.6
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 2.7e-145 519.2 435 61.6
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 6.0e-145 518.1 435 61.4
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 2.3e-144 516.2 394 63.2
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.0e-144 515.8 396 63.4
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-143 513.8 394 63.5
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.5e-143 513.5 407 64.6
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.9e-143 513.1 394 63.5
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.3e-143 512.3 395 63.3
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.6e-142 510.0 401 63.1
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.8e-142 509.2 412 63.3
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 6.2e-142 508.1 395 63.3
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 8.1e-142 507.7 401 61.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.1e-141 505.8 394 62.2
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.2e-140 503.8 396 61.9
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-140 503.1 394 62.4
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 2.0e-140 503.1 382 63.9
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 4.5e-140 501.9 394 61.9
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 5.8e-140 501.5 394 61.9
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 5.8e-140 501.5 394 61.9
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.8e-140 501.5 401 62.3
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 9.9e-140 500.7 394 62.4
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.3e-139 500.4 395 63.5
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.2e-139 499.6 395 61.3
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 3.2e-138 495.7 402 62.9
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 9.3e-138 494.2 378 61.6
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.2e-137 493.8 394 62.2
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.7e-137 492.7 376 62.5
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 3.5e-137 492.3 394 61.7
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.6e-137 491.9 390 63.3
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 4.6e-137 491.9 384 62.5
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.3e-136 490.3 394 60.9
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 3.0e-136 489.2 395 61.8
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 3.9e-136 488.8 396 61.6
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 6.7e-136 488.0 403 60.8
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.3e-134 483.8 411 60.3
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.6e-134 483.4 399 60.4
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.6e-134 482.3 394 59.6
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 3.6e-134 482.3 526 51.1
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 4.8e-134 481.9 398 60.6
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 4.8e-134 481.9 398 60.6
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 4.8e-134 481.9 398 60.6
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.2e-134 481.5 410 60.2
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 6.2e-134 481.5 407 59.2
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.1e-133 480.7 411 60.1
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.4e-133 480.3 475 53.5
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-133 479.9 399 61.4
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-133 479.9 419 58.5
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 4.0e-133 478.8 399 61.2
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 4.0e-133 478.8 403 61.0
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 5.3e-133 478.4 407 60.9
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.9e-133 478.0 366 64.5
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.5e-132 476.9 411 59.4
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 4.5e-132 475.3 368 62.2
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 4.9e-131 471.9 405 60.0
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.6e-129 466.8 317 71.9
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.0e-128 462.6 392 56.6
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.6e-126 456.8 641 43.4
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 3.7e-126 455.7 406 56.7
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 9.3e-122 441.0 392 54.1
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.0e-120 437.6 287 72.5
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 5.1e-120 435.3 409 55.0
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.3e-118 430.6 288 71.2
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 2.5e-111 406.4 288 68.4
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 2.8e-110 402.9 286 66.8
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.6e-108 396.4 364 55.8
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 4.4e-87 325.9 247 66.0
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.9e-83 313.2 218 67.9
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 9.1e-77 291.6 244 58.2
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.6e-73 280.8 210 64.3
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.1e-69 268.1 196 69.9
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 3.8e-67 259.6 311 46.3
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.0e-64 250.0 165 73.9
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 5.2e-64 249.2 235 54.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.0e-59 235.0 188 61.7
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 4.1e-53 213.0 300 41.3
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.0e-51 206.8 413 38.3
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.6e-44 184.5 407 31.4
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.2e-38 164.1 262 42.4
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 6.2e-33 146.0 188 44.1
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-32 145.2 128 58.6
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 2.6e-31 140.6 286 32.5
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 6.0e-28 129.4 649 22.3
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.8e-28 129.0 138 50.7
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 2.3e-27 127.5 117 57.3
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.1e-26 125.2 94 68.1
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 4.2e-21 106.7 122 51.6
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 6.2e-17 92.8 376 26.3
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 9.9e-15 85.5 103 50.5
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 7.1e-13 79.3 60 61.7
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.6e-09 68.2 57 63.2
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.7e-09 67.0 47 61.7
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 4.9e-06 56.6 34 73.5


User provided reference genes

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