Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 2.8e-179 632.1 384 100.0
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 4.8e-155 551.6 330 89.1
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 1.1e-140 503.8 336 83.9
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 1.7e-128 463.4 337 74.8
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 8.5e-128 461.1 338 74.3
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 1.5e-127 460.3 335 76.1
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 1.5e-127 460.3 335 76.1
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 7.2e-127 458.0 332 74.7
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 3.6e-126 455.7 330 74.2
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 4.7e-126 455.3 331 76.7
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 8.0e-126 454.5 335 74.9
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 1.0e-125 454.1 337 74.5
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 1.0e-125 454.1 339 74.3
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 1.4e-125 453.8 339 75.2
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 5.2e-125 451.8 328 75.6
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 1.1e-124 450.7 329 74.8
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 1.5e-124 450.3 331 72.5
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 2.6e-124 449.5 339 74.3
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 3.3e-124 449.1 338 71.9
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 3.3e-124 449.1 333 74.8
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 7.5e-124 448.0 340 74.4
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 9.7e-124 447.6 332 73.8
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 1.3e-123 447.2 338 72.5
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 2.8e-123 446.0 325 74.5
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 4.8e-123 445.3 328 74.1
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 1.4e-122 443.7 338 71.6
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 1.4e-122 443.7 364 68.7
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 1.8e-122 443.4 339 72.6
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 3.1e-122 442.6 334 74.3
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 9.1e-122 441.0 342 72.8
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 1.6e-121 440.3 332 73.8
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 3.5e-121 439.1 333 73.0
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 7.7e-121 438.0 333 73.3
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 1.3e-120 437.2 335 72.2
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 1.7e-120 436.8 329 72.9
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 2.9e-120 436.0 331 73.1
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.5e-120 434.9 338 71.9
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 8.5e-120 434.5 336 69.6
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 8.5e-120 434.5 329 73.9
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.1e-119 434.1 339 71.7
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.1e-119 434.1 339 71.7
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 1.5e-119 433.7 341 71.0
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 1.5e-119 433.7 370 67.8
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 1.9e-119 433.3 328 70.7
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 2.5e-119 433.0 323 73.4
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 2.5e-119 433.0 323 73.4
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 3.2e-119 432.6 336 69.0
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 4.2e-119 432.2 333 73.9
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 5.5e-119 431.8 327 73.1
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 1.6e-118 430.3 338 69.2
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 2.1e-118 429.9 340 68.5
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 2.1e-118 429.9 327 71.6
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 2.7e-118 429.5 338 68.9
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 3.6e-118 429.1 339 68.7
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 4.7e-118 428.7 337 70.9
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 6.1e-118 428.3 336 67.9
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 1.0e-117 427.6 341 68.9
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 1.0e-117 427.6 340 68.2
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 2.6e-116 422.9 332 71.1
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 5.7e-116 421.8 349 67.6
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 5.7e-116 421.8 366 66.1
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 7.5e-116 421.4 327 71.3
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 9.8e-116 421.0 335 69.6
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 1.3e-115 420.6 350 68.0
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 2.2e-115 419.9 273 81.0
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 3.7e-115 419.1 337 66.5
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 4.8e-115 418.7 332 69.3
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 6.3e-115 418.3 335 69.9
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 1.4e-114 417.2 328 71.0
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 1.4e-114 417.2 267 79.8
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 1.4e-114 417.2 339 69.3
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 2.4e-114 416.4 324 71.3
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 4.1e-114 415.6 342 66.4
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 7.0e-114 414.8 325 70.5
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 9.1e-114 414.5 260 81.5
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 1.6e-113 413.7 332 69.3
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 1.6e-113 413.7 318 70.4
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.5e-113 412.1 349 68.5
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 4.5e-113 412.1 339 67.8
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 5.9e-113 411.8 262 81.3
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 1.3e-112 410.6 320 70.0
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 1.7e-112 410.2 297 74.1
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 6.5e-112 408.3 332 67.2
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 1.5e-111 407.1 329 66.6
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 3.2e-111 406.0 360 63.9
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 3.6e-110 402.5 333 67.3
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 2.6e-108 396.4 332 67.2
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 1.7e-107 393.7 295 74.9
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 3.7e-107 392.5 425 58.6
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 5.9e-105 385.2 280 71.1
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 3.3e-103 379.4 328 63.7
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 7.3e-103 378.3 328 65.9
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 2.0e-100 370.2 336 62.5
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 5.7e-100 368.6 239 79.5
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 7.5e-100 368.2 333 62.2
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.9e-99 365.5 298 67.8
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 2.4e-98 363.2 241 76.8
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 7.0e-98 361.7 298 67.8
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 2.8e-94 349.7 267 66.3
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 4.7e-94 349.0 329 59.6
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 8.0e-94 348.2 301 61.5
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 8.3e-91 338.2 267 64.0
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.3e-87 325.9 228 75.4
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 9.5e-87 324.7 352 50.9
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 9.5e-87 324.7 352 50.9
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 6.8e-85 318.5 266 60.5
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 3.7e-83 312.8 326 57.1
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 8.3e-83 311.6 364 53.6
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 1.0e-80 304.7 252 66.7
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 4.3e-79 299.3 294 57.1
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 1.1e-77 294.7 316 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 1.8e-77 293.9 260 56.9
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 2.4e-74 283.5 329 48.3
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.1e-71 274.6 224 69.2
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.2e-68 264.6 339 52.8
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 3.4e-68 263.1 278 59.0
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 5.8e-68 262.3 215 65.1
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.6e-65 254.2 170 79.4
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 7.6e-52 208.8 223 51.1
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.7e-49 200.3 169 67.5
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 4.3e-47 193.0 175 62.9
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 7.2e-34 149.1 93 81.7
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.5e-28 129.8 112 66.1
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.4e-26 124.8 110 56.4
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 2.5e-18 97.4 62 72.6
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 3.2e-18 97.1 100 60.0
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 3.6e-17 93.6 113 43.4
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 1.5e-15 88.2 239 28.9


User provided reference genes

Program Settings