Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 3.9e-108 394.8 198 100.0
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 9.6e-75 283.9 218 73.9
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 6.2e-74 281.2 223 72.6
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 3.7e-66 255.4 208 68.8
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.4e-57 226.1 222 58.1
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 4.1e-57 225.3 219 57.5
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 9.0e-57 224.2 223 57.8
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 3.4e-56 222.2 208 61.1
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 4.5e-56 221.9 218 57.8
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 5.9e-56 221.5 222 56.8
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.3e-55 220.3 217 57.6
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.3e-55 220.3 220 57.3
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.7e-55 219.9 220 56.8
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 2.2e-55 219.5 222 55.4
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 8.4e-55 217.6 198 60.1
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 1.4e-54 216.9 203 58.1
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 4.2e-54 215.3 224 56.2
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 4.2e-54 215.3 224 56.2
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 1.2e-53 213.8 207 58.0
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 1.6e-53 213.4 195 59.5
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 2.1e-53 213.0 219 54.8
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 2.7e-53 212.6 219 56.6
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 4.6e-53 211.8 225 55.1
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.0e-52 210.7 194 58.8
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 2.3e-52 209.5 239 51.5
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 3.0e-52 209.1 212 55.2
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 5.1e-52 208.4 198 57.6
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 6.7e-52 208.0 232 52.6
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 8.7e-52 207.6 195 59.0
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 8.7e-52 207.6 212 52.8
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 8.7e-52 207.6 202 59.4
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.3e-51 205.7 219 53.9
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 4.3e-51 205.3 201 56.2
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 9.7e-51 204.1 223 53.4
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 1.3e-50 203.8 221 52.0
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 1.3e-50 203.8 224 51.8
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 2.2e-50 203.0 217 53.0
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 2.2e-50 203.0 217 53.5
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.2e-50 203.0 220 53.2
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 4.8e-50 201.8 218 53.7
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 6.3e-50 201.4 223 52.5
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 6.3e-50 201.4 186 59.1
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 1.1e-49 200.7 211 52.6
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 1.1e-49 200.7 217 52.1
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 1.4e-49 200.3 201 55.7
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 3.1e-49 199.1 217 52.1
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 4.1e-49 198.7 228 52.6
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 5.3e-49 198.4 203 57.1
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 5.3e-49 198.4 160 63.1
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 6.9e-49 198.0 220 53.2
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 6.9e-49 198.0 227 51.5
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 9.0e-49 197.6 229 50.2
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 9.0e-49 197.6 227 52.0
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 1.2e-48 197.2 198 55.6
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.2e-48 197.2 219 51.6
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 1.2e-48 197.2 225 50.2
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 3.4e-48 195.7 215 54.0
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 3.4e-48 195.7 215 54.0
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 3.4e-48 195.7 172 62.2
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 3.4e-48 195.7 189 54.5
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 3.4e-48 195.7 228 49.6
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 4.5e-48 195.3 220 52.7
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 4.5e-48 195.3 204 52.5
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 4.5e-48 195.3 223 51.6
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 1.0e-47 194.1 228 50.0
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 1.0e-47 194.1 153 62.1
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.3e-47 193.7 210 50.5
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 1.7e-47 193.4 229 48.9
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.7e-47 193.4 222 51.4
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 2.2e-47 193.0 224 50.9
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 2.2e-47 193.0 251 47.0
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 2.9e-47 192.6 228 48.7
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.8e-47 192.2 199 54.8
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 5.0e-47 191.8 196 56.6
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 6.5e-47 191.4 169 59.8
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 6.5e-47 191.4 226 51.3
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.1e-46 190.7 199 54.3
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.1e-46 190.7 200 52.0
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 1.4e-46 190.3 185 55.7
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.4e-46 190.3 199 54.8
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 1.4e-46 190.3 222 48.2
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.9e-46 189.9 177 59.3
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 2.5e-46 189.5 225 50.2
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 3.2e-46 189.1 214 49.1
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 4.2e-46 188.7 176 57.4
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 7.2e-46 188.0 230 48.7
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 7.2e-46 188.0 164 55.5
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 7.2e-46 188.0 222 47.3
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 9.4e-46 187.6 225 48.9
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 9.4e-46 187.6 197 52.8
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 9.4e-46 187.6 200 51.5
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 1.2e-45 187.2 175 58.3
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 1.2e-45 187.2 175 58.3
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 1.6e-45 186.8 228 50.9
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 2.1e-45 186.4 212 51.9
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.1e-45 186.4 218 49.1
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 6.1e-45 184.9 217 47.9
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 6.1e-45 184.9 217 48.4
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 7.9e-45 184.5 180 56.1
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 1.4e-44 183.7 194 53.1
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.4e-44 183.7 224 49.6
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.8e-44 183.3 223 47.1
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 1.8e-44 183.3 205 49.8
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.3e-44 183.0 225 49.8
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 3.0e-44 182.6 224 49.1
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 3.9e-44 182.2 161 56.5
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 3.9e-44 182.2 216 48.6
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 3.9e-44 182.2 190 51.1
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 6.7e-44 181.4 184 52.2
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 8.8e-44 181.0 214 49.1
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 1.5e-43 180.3 202 51.5
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 2.5e-43 179.5 195 50.8
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 5.7e-43 178.3 215 50.2
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 9.7e-43 177.6 207 45.9
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 9.7e-43 177.6 215 48.8
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 1.3e-42 177.2 224 47.3
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 1.7e-42 176.8 214 49.5
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 2.8e-42 176.0 206 49.5
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 6.3e-42 174.9 206 48.5
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 1.4e-41 173.7 221 48.0
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 4.1e-41 172.2 157 54.8
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 1.5e-40 170.2 189 50.3
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 1.5e-40 170.2 177 52.5
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 4.5e-40 168.7 163 54.6
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 3.8e-39 165.6 176 54.5
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 5.0e-39 165.2 133 64.7
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 1.1e-38 164.1 228 43.4
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 1.9e-38 163.3 229 44.1
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 1.9e-38 163.3 243 43.6
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 1.6e-37 160.2 147 57.8
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.6e-37 160.2 208 46.2
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 5.7e-35 151.8 140 56.4
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 6.3e-34 148.3 218 43.6
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.4e-33 147.1 154 51.3
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 2.6e-32 142.9 132 56.1
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 4.5e-32 142.1 194 41.2
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.5e-30 137.1 210 40.5
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.2e-29 134.0 202 43.1
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 6.1e-29 131.7 188 45.2
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 2.6e-27 126.3 164 48.8
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 1.2e-24 117.5 152 50.7
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 1.0e-23 114.4 195 38.5
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 5.5e-22 108.6 69 71.0
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 5.7e-19 98.6 181 41.4
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 7.5e-19 98.2 72 59.7
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 1.8e-17 93.6 80 61.2
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 2.0e-16 90.1 55 70.9
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.2e-15 86.7 57 66.7
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 5.0e-15 85.5 54 64.8
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 4.7e-13 79.0 108 42.6
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.8e-09 67.0 52 59.6
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 1.8e-09 67.0 44 63.6
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.0e-08 63.5 36 75.0
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 2.7e-08 63.2 67 46.3
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 3.5e-08 62.8 126 34.9
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 9.5e-06 54.7 38 65.8


User provided reference genes

Program Settings