Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 3.1e-285 984.6 538 100.0
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.5e-146 523.9 549 60.8
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.2e-134 483.4 542 58.9
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 6.5e-57 226.1 570 38.4
ECA238G1893 Erigeron canadensis HOM05D004189 ORTHO05D004092 6.7e-54 216.1 327 48.3
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.8e-51 208.0 582 35.9
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.1e-48 198.7 558 34.4
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 7.2e-48 196.1 567 34.2
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 7.4e-45 186.0 577 31.0
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 2.8e-44 184.1 594 32.8
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.6e-42 177.6 503 34.4
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 4.5e-42 176.8 574 32.6
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 5.9e-42 176.4 613 33.6
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 5.7e-37 159.8 391 34.5
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.7e-36 158.3 507 29.6
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 4.8e-36 156.8 585 33.7
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 4.8e-36 156.8 546 34.6
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 8.2e-36 156.0 521 33.4
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 4.1e-35 153.7 265 42.3
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 5.3e-35 153.3 499 33.7
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 5.3e-35 153.3 408 33.1
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.2e-34 152.1 598 32.8
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 2.0e-34 151.4 617 32.9
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 2.6e-34 151.0 612 28.9
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.6e-34 151.0 492 29.5
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.3e-33 148.7 549 35.0
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.7e-33 148.3 389 36.2
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.5e-33 146.0 388 32.7
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.1e-32 145.6 577 29.5
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.2e-31 142.1 606 27.9
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.6e-31 141.7 639 29.1
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.7e-31 141.0 617 28.7
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.0e-30 139.0 449 29.8
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 6.7e-30 136.3 366 36.9
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.5e-29 135.2 591 30.6
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.5e-29 135.2 538 32.7
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.6e-29 134.4 534 29.6
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 9.7e-29 132.5 542 34.7
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.7e-28 131.7 450 33.3
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 4.8e-28 130.2 609 29.2
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 6.3e-28 129.8 485 30.5
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 8.2e-28 129.4 654 30.9
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.1e-27 129.0 575 30.1
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.1e-27 129.0 463 31.5
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 1.4e-27 128.6 500 30.0
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 4.1e-27 127.1 358 32.7
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.6e-26 125.2 560 29.5
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 2.0e-26 124.8 603 30.2
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 3.5e-26 124.0 645 28.5
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 5.9e-26 123.2 681 28.6
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 7.7e-26 122.9 601 30.4
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 7.7e-26 122.9 601 30.4
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.3e-25 122.1 570 28.2
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.3e-25 122.1 703 28.4
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 6.5e-25 119.8 674 29.7
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.1e-24 119.0 556 29.1
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 3.2e-24 117.5 593 29.3
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 4.2e-24 117.1 568 28.9
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 4.2e-24 117.1 554 27.6
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.2e-24 117.1 599 27.9
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.2e-23 115.5 654 26.1
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.1e-23 114.8 617 27.1
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.7e-23 114.4 621 29.5
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 2.7e-23 114.4 581 31.8
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.8e-22 111.7 262 37.0
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 2.3e-22 111.3 332 33.1
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.3e-22 111.3 528 28.0
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 3.0e-22 110.9 566 28.6
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 6.7e-22 109.8 563 28.4
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.0e-21 108.2 717 26.9
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.3e-21 107.5 731 26.7
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 7.5e-21 106.3 444 30.0
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.3e-20 105.5 573 28.6
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.7e-20 105.1 583 28.3
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 2.2e-20 104.8 430 30.0
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 2.2e-20 104.8 330 31.8
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 8.2e-20 102.8 576 27.3
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.8e-19 101.7 616 27.3
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 2.4e-19 101.3 586 28.2
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 2.4e-19 101.3 299 32.8
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 4.1e-19 100.5 506 30.2
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 4.1e-19 100.5 552 28.1
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 5.3e-19 100.1 281 33.1
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.2e-18 99.0 626 28.6
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.7e-18 97.8 339 29.8
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.7e-18 97.8 663 28.7
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 3.5e-18 97.4 290 33.8
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 3.5e-18 97.4 253 39.1
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 4.5e-18 97.1 440 27.3
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.7e-17 95.1 485 27.4
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.2e-17 94.7 512 28.3
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 2.9e-17 94.4 267 32.6
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 3.8e-17 94.0 329 31.6
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 8.5e-17 92.8 531 25.8
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 8.5e-17 92.8 538 29.2
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 1.9e-16 91.7 688 29.8
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.9e-16 91.7 256 36.3
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 3.2e-16 90.9 267 34.5
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 4.2e-16 90.5 672 24.1
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.5e-16 90.1 558 26.0
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 7.2e-16 89.7 302 28.1
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 1.6e-15 88.6 395 27.8
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.1e-15 88.2 489 29.9
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 8.0e-15 86.3 461 29.1
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 3.0e-14 84.3 543 27.1
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.0e-14 84.0 294 33.0
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 4.0e-14 84.0 616 28.6
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 4.0e-14 84.0 513 27.3
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 1.2e-13 82.4 515 25.2
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.6e-13 81.3 214 33.2
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 3.4e-13 80.9 226 34.1
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 4.4e-13 80.5 518 26.4
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 5.7e-13 80.1 546 27.1
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 9.8e-13 79.3 545 25.9
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 9.8e-13 79.3 223 31.8
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 4.8e-12 77.0 418 27.5
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 8.3e-12 76.3 203 33.5
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.4e-11 75.5 516 25.2
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 1.8e-11 75.1 306 28.8
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 4.1e-11 73.9 159 37.1
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 4.1e-11 73.9 402 27.4
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 4.1e-11 73.9 242 30.6
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 7.0e-11 73.2 521 27.1
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-10 72.4 583 26.6
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.6e-10 72.0 306 31.4
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 2.0e-10 71.6 519 25.8
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 2.0e-10 71.6 609 24.1
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 1.0e-09 69.3 290 33.8
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.0e-09 69.3 580 27.1
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.3e-09 68.9 267 28.1
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 1.7e-09 68.6 186 33.9
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 2.2e-09 68.2 287 33.8
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.2e-09 68.2 286 27.6
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 3.8e-09 67.4 580 26.7
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 3.8e-09 67.4 124 37.1
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 8.5e-09 66.2 216 29.6
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 8.5e-09 66.2 220 30.5
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 1.1e-08 65.9 124 37.1
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 1.9e-08 65.1 124 36.3
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 3.2e-08 64.3 323 26.9
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 5.5e-08 63.5 578 26.3
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 5.5e-08 63.5 110 37.3
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.5e-08 63.5 120 38.3
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.2e-07 62.4 325 27.1
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 2.1e-07 61.6 91 41.8
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 2.1e-07 61.6 186 33.3
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 3.6e-07 60.8 103 39.8
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 3.6e-07 60.8 103 39.8
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 3.6e-07 60.8 103 39.8
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.7e-07 60.5 573 25.1
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 4.7e-07 60.5 118 37.3
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 6.1e-07 60.1 120 37.5
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 8.0e-07 59.7 292 27.4
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.0e-07 59.7 292 27.4
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 1.0e-06 59.3 103 39.8
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 1.0e-06 59.3 107 40.2
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 2.3e-06 58.2 228 24.1
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.0e-06 57.8 111 36.0
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 5.2e-06 57.0 140 32.1
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 6.8e-06 56.6 155 32.3
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 8.8e-06 56.2 258 27.1
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 8.8e-06 56.2 130 31.5
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 8.8e-06 56.2 95 35.8


User provided reference genes

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