Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 3.1e-259 897.9 443 100.0
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.5e-253 879.0 443 97.7
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 1.6e-234 815.8 446 89.0
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.0e-225 786.6 427 89.5
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.1e-222 776.5 442 84.8
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.1e-219 766.5 443 82.8
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 7.1e-219 763.8 441 82.8
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 9.2e-219 763.5 443 83.3
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 9.2e-219 763.5 442 83.5
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 2.1e-218 762.3 443 82.4
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 2.7e-218 761.9 444 82.9
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 3.5e-218 761.5 438 83.8
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 3.5e-218 761.5 441 82.8
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 4.6e-218 761.1 441 82.5
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 6.0e-218 760.8 442 82.8
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.0e-217 760.0 441 82.3
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.3e-217 759.6 442 83.0
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.3e-217 758.8 442 83.0
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.9e-217 758.1 441 82.3
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 5.1e-217 757.7 442 83.3
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 6.6e-217 757.3 441 81.6
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 1.5e-216 756.1 441 82.3
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.5e-216 756.1 440 83.6
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.9e-216 755.7 442 82.8
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 2.5e-216 755.4 441 82.8
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 4.3e-216 754.6 442 81.7
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.3e-216 754.6 442 82.1
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 5.6e-216 754.2 444 80.9
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.6e-215 752.7 443 81.7
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 1.6e-215 752.7 441 81.4
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.1e-215 752.3 441 82.5
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 2.1e-215 752.3 442 82.6
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 4.7e-215 751.1 444 81.8
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 4.7e-215 751.1 443 81.7
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.1e-215 750.4 441 82.3
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 1.4e-214 749.6 441 81.9
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.8e-214 749.2 440 81.4
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.0e-214 748.0 441 82.1
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 4.0e-214 748.0 441 82.1
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 9.0e-214 746.9 441 82.5
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.2e-213 746.5 441 81.6
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.5e-213 746.1 440 82.0
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.0e-213 745.7 446 81.6
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.6e-213 745.3 441 81.9
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.8e-213 744.2 441 81.9
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.8e-213 744.2 441 81.6
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 9.9e-213 743.4 442 81.4
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 2.2e-212 742.3 443 80.6
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 2.2e-212 742.3 482 76.3
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 2.2e-212 742.3 441 81.9
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 2.9e-212 741.9 441 81.6
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 3.8e-212 741.5 441 82.1
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 4.9e-212 741.1 443 81.5
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.1e-211 740.0 443 81.3
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.4e-211 739.6 443 81.0
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 1.9e-211 739.2 444 81.1
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.9e-211 739.2 444 81.1
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.9e-211 739.2 443 81.0
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.4e-211 738.8 441 81.2
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 5.4e-211 737.6 442 81.0
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 5.4e-211 737.6 444 80.6
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 5.4e-211 737.6 444 80.4
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 5.4e-211 737.6 441 81.9
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 5.4e-211 737.6 444 80.9
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 9.3e-211 736.9 441 80.5
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.2e-210 736.5 441 80.7
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 2.7e-210 735.3 442 80.5
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 2.7e-210 735.3 444 80.4
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 4.6e-210 734.6 442 81.0
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 4.6e-210 734.6 448 80.4
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 4.6e-210 734.6 441 79.8
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 6.0e-210 734.2 425 83.1
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 6.0e-210 734.2 442 80.5
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 7.8e-210 733.8 442 79.6
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 7.8e-210 733.8 438 81.1
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 7.8e-210 733.8 441 81.0
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 7.8e-210 733.8 452 78.8
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 7.8e-210 733.8 443 80.1
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 1.0e-209 733.4 444 80.6
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.7e-209 732.6 442 80.8
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 1.7e-209 732.6 441 80.0
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.3e-209 732.3 444 80.2
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 2.3e-209 732.3 444 80.6
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 2.3e-209 732.3 441 80.7
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 3.0e-209 731.9 438 81.5
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 3.0e-209 731.9 456 78.7
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.1e-209 731.1 445 81.1
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 6.6e-209 730.7 443 80.1
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.1e-208 729.9 442 79.2
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.5e-208 728.8 444 80.2
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.5e-208 728.8 475 75.8
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 4.3e-208 728.0 452 79.0
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 4.3e-208 728.0 441 80.0
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 5.6e-208 727.6 443 80.4
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 7.3e-208 727.2 446 79.1
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.6e-207 726.1 444 79.5
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 3.6e-207 724.9 448 79.9
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 3.6e-207 724.9 441 79.8
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 1.8e-206 722.6 445 79.6
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 6.9e-206 720.7 445 78.9
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 3.4e-205 718.4 441 78.9
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 3.4e-205 718.4 441 78.9
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 2.4e-203 712.2 439 78.8
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.1e-202 709.1 442 78.1
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 3.3e-200 701.8 441 78.2
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 5.6e-200 701.0 466 75.3
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 1.4e-198 696.4 439 77.7
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 3.5e-194 681.8 381 84.8
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 4.6e-194 681.4 447 74.5
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 6.0e-194 681.0 439 75.2
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 5.1e-193 677.9 439 75.4
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.3e-185 653.3 443 72.7
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.5e-184 649.8 404 77.5
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 7.7e-181 637.5 442 73.1
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 2.9e-180 635.6 383 80.9
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 2.7e-178 629.0 440 70.7
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.8e-174 616.3 383 79.1
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 3.0e-169 599.0 337 86.1
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.5e-165 585.1 439 69.5
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 6.5e-164 581.3 429 69.9
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 3.1e-158 562.4 347 79.8
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 1.6e-157 560.1 467 61.5
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 3.8e-156 555.4 393 71.2
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 8.8e-153 544.3 443 63.2
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.2e-151 539.7 382 70.4
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 9.8e-144 514.2 339 76.4
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 8.6e-140 501.1 436 62.8
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 3.3e-131 472.6 485 50.7
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 6.6e-124 448.4 301 77.7
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.4e-120 436.0 241 87.1
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 3.0e-108 396.4 406 52.0
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.6e-108 394.8 228 84.6
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 5.2e-105 385.6 193 97.4
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 2.6e-104 383.3 253 73.9
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.4e-102 376.7 434 48.8
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.7e-93 346.7 237 71.3
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-92 344.4 310 59.7
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.3e-92 344.4 193 84.5
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 4.5e-88 329.3 236 67.8
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 5.1e-84 315.8 193 79.3
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.8e-82 309.3 430 45.1
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 2.3e-76 290.4 263 62.7
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 6.7e-60 235.7 202 63.4
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 1.5e-59 234.6 158 70.3
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 8.5e-55 218.8 298 46.3
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 3.9e-52 209.9 148 68.2
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 2.0e-43 181.0 234 46.6
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 3.3e-43 180.3 149 60.4
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.1e-41 175.3 151 63.6
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 2.6e-40 170.6 114 71.1
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 1.2e-35 155.2 129 60.5
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 5.4e-33 146.4 161 52.8
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.5e-30 138.3 75 84.0
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 4.7e-29 133.3 79 79.7
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 5.4e-25 119.8 85 68.2
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 5.6e-22 109.8 51 98.0
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 2.1e-21 107.8 51 94.1
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 5.7e-19 99.8 52 86.5
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.2e-17 94.0 93 53.8
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 1.5e-14 85.1 70 57.1
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.8e-13 80.9 61 72.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 1.3e-10 72.0 51 66.7
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.9e-10 70.9 36 86.1
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 4.6e-08 63.5 30 86.7
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 1.0e-07 62.4 47 61.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 3.3e-06 57.4 38 71.1


User provided reference genes

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