Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 1.8e-139 499.2 246 100.0
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 2.8e-108 395.6 255 81.6
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 3.4e-106 388.7 251 78.9
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 5.9e-90 334.7 226 74.8
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 2.9e-89 332.4 227 74.9
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 7.2e-88 327.8 226 73.5
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 9.4e-88 327.4 260 66.9
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 1.2e-87 327.0 254 68.1
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 4.7e-87 325.1 226 72.6
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 8.0e-87 324.3 254 66.5
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 8.0e-87 324.3 253 68.4
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 1.0e-86 323.9 226 72.6
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 3.0e-86 322.4 249 68.3
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 3.0e-86 322.4 230 72.2
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 8.8e-86 320.9 243 70.0
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 7.5e-85 317.8 185 82.7
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 2.8e-84 315.8 230 71.7
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 2.8e-84 315.8 185 80.5
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 1.1e-83 313.9 239 68.2
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 3.1e-83 312.4 228 71.5
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 4.1e-83 312.0 229 69.0
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 4.1e-83 312.0 243 67.1
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 5.3e-83 311.6 237 67.5
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 7.0e-83 311.2 225 70.2
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 7.0e-83 311.2 225 70.2
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 7.0e-83 311.2 231 69.3
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 9.1e-83 310.8 193 78.2
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 1.2e-82 310.5 244 68.0
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 2.0e-82 309.7 226 71.2
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 2.0e-82 309.7 226 71.2
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 2.7e-82 309.3 226 68.1
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 2.7e-82 309.3 225 71.6
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 2.7e-82 309.3 233 69.1
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 3.5e-82 308.9 192 77.6
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 4.5e-82 308.5 256 66.0
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 7.7e-82 307.8 191 81.2
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 1.0e-81 307.4 251 65.7
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 1.3e-81 307.0 239 67.4
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 1.3e-81 307.0 259 65.6
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 1.3e-81 307.0 241 68.0
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 1.3e-81 307.0 226 68.6
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 1.7e-81 306.6 231 70.1
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 2.2e-81 306.2 243 67.1
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 2.9e-81 305.8 194 78.9
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 3.8e-81 305.4 244 66.0
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 3.8e-81 305.4 256 65.2
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 5.0e-81 305.1 225 68.4
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 5.0e-81 305.1 225 68.4
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 5.0e-81 305.1 225 68.4
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 6.5e-81 304.7 194 78.4
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 8.5e-81 304.3 226 68.6
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 1.1e-80 303.9 227 68.3
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 1.5e-80 303.5 236 70.8
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.5e-80 303.5 236 70.8
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 1.5e-80 303.5 243 68.3
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 1.9e-80 303.1 238 67.2
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 1.9e-80 303.1 249 65.9
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 2.5e-80 302.8 247 66.0
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 3.2e-80 302.4 228 67.5
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 3.2e-80 302.4 236 64.4
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 3.2e-80 302.4 244 67.6
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 3.2e-80 302.4 255 64.7
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 4.2e-80 302.0 225 68.4
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 4.2e-80 302.0 238 69.3
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 9.4e-80 300.8 262 63.0
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 1.2e-79 300.4 230 68.3
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 1.2e-79 300.4 255 62.7
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 1.2e-79 300.4 240 67.5
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 2.1e-79 299.7 227 66.1
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 2.7e-79 299.3 240 67.9
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 3.6e-79 298.9 226 70.8
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 6.1e-79 298.1 237 69.2
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 8.0e-79 297.7 236 66.5
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 1.0e-78 297.4 235 67.2
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 1.8e-78 296.6 253 64.0
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 2.3e-78 296.2 246 65.0
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 5.2e-78 295.0 243 64.2
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 5.2e-78 295.0 243 64.2
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 6.8e-78 294.7 187 77.0
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 6.8e-78 294.7 194 77.3
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 1.5e-77 293.5 185 76.8
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 2.0e-77 293.1 192 75.0
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 2.0e-77 293.1 228 68.9
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 3.4e-77 292.4 246 65.4
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 2.8e-76 289.3 188 75.5
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 3.7e-76 288.9 173 80.9
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 6.3e-76 288.1 261 59.8
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 1.1e-75 287.3 188 76.1
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 1.4e-75 287.0 222 66.2
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 3.1e-75 285.8 180 77.2
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 4.1e-75 285.4 233 64.8
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 1.2e-74 283.9 284 58.5
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 1.2e-74 283.9 225 65.3
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 5.0e-73 278.5 226 65.9
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 8.5e-73 277.7 225 64.0
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 4.2e-72 275.4 246 60.2
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 4.2e-72 275.4 243 63.0
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 4.2e-72 275.4 269 57.2
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 2.7e-71 272.7 253 56.1
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 7.5e-69 264.6 222 62.6
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 5.4e-67 258.5 138 87.7
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 5.9e-66 255.0 184 71.2
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 7.3e-64 248.1 248 55.6
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 4.7e-63 245.4 224 57.6
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 3.3e-56 222.6 131 81.7
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 8.3e-52 208.0 199 59.8
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 4.3e-48 195.7 186 55.4
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 2.1e-47 193.4 229 46.3
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 8.9e-46 188.0 135 68.9
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 4.1e-43 179.1 206 50.0
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 3.0e-41 172.9 195 55.4
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 3.4e-37 159.5 123 57.7
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.3e-36 157.5 185 47.0
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.1e-32 144.4 105 69.5
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 4.7e-31 139.0 103 68.9
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 6.2e-31 138.7 71 90.1
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 1.4e-27 127.5 191 42.9
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 1.2e-26 124.4 61 95.1
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 9.9e-21 104.8 60 86.7
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 1.0e-17 94.7 131 47.3
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 3.9e-17 92.8 84 63.1
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 1.5e-16 90.9 181 36.5
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 1.4e-14 84.3 126 46.0
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 9.0e-14 81.6 107 46.7
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 5.5e-11 72.4 62 58.1
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 2.1e-10 70.5 105 46.7
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 3.5e-10 69.7 85 47.1
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 7.9e-10 68.6 106 40.6
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 7.4e-08 62.0 54 61.1


User provided reference genes

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