Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 1.7e-79 299.3 152 100.0
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 1.6e-74 282.7 152 94.7
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 1.1e-59 233.4 150 76.0
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 1.6e-58 229.6 150 76.7
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.0e-40 169.5 149 53.7
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 8.5e-39 164.1 149 51.0
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 1.9e-38 162.9 149 51.7
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 5.5e-38 161.4 152 50.0
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 5.5e-38 161.4 149 51.7
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 4.7e-37 158.3 148 50.7
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 8.0e-37 157.5 149 52.3
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 1.0e-36 157.1 152 49.3
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.0e-36 157.1 152 53.9
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.0e-36 157.1 152 53.9
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.4e-36 156.8 152 48.7
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.8e-36 156.4 149 51.7
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 3.0e-36 155.6 149 49.0
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 3.0e-36 155.6 148 51.4
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 6.7e-36 154.5 148 48.6
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 8.8e-36 154.1 149 49.7
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 8.8e-36 154.1 149 49.0
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 4.4e-35 151.8 149 49.7
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 5.7e-35 151.4 149 48.3
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 7.5e-35 151.0 149 49.0
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 1.3e-34 150.2 149 46.3
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 1.3e-34 150.2 149 47.0
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 2.8e-34 149.1 149 49.0
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.8e-33 146.4 149 47.7
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.4e-33 146.0 151 45.0
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 7.0e-33 144.4 151 48.3
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 7.0e-33 144.4 151 45.0
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 7.0e-33 144.4 148 49.3
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 9.1e-33 144.1 151 44.4
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 1.2e-32 143.7 149 48.3
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 3.5e-32 142.1 148 45.9
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 4.5e-32 141.7 148 47.3
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 7.7e-32 141.0 149 44.3
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 2.2e-31 139.4 149 43.0
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 1.1e-30 137.1 149 45.6
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 1.5e-30 136.7 139 50.4
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 2.5e-30 136.0 149 43.0
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 2.5e-30 136.0 149 43.6
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 4.2e-30 135.2 152 45.4
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 5.5e-30 134.8 148 45.9
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 1.6e-29 133.3 149 47.7
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.6e-29 133.3 149 44.3
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.6e-29 133.3 149 44.3
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 2.1e-29 132.9 135 50.4
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 3.0e-28 129.0 149 39.6
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-27 127.1 141 44.7
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 1.5e-27 126.7 148 43.2
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 2.6e-27 125.9 115 53.0
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.6e-27 125.9 148 43.9
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 3.4e-27 125.6 149 44.3
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.4e-27 125.2 149 43.6
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 5.7e-27 124.8 147 44.2
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.7e-27 124.8 125 48.8
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 9.8e-27 124.0 149 41.6
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 2.2e-26 122.9 152 42.8
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 3.7e-26 122.1 148 42.6
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.3e-26 120.9 149 43.6
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 1.1e-25 120.6 150 41.3
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 3.1e-25 119.0 149 43.0
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 4.1e-25 118.6 151 44.4
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 5.4e-25 118.2 148 41.2
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 1.2e-24 117.1 152 40.8
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.5e-24 115.5 150 43.3
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.0e-23 114.0 149 40.3
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.0e-23 114.0 149 40.3
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.7e-23 113.2 148 41.9
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 2.2e-23 112.8 148 40.5
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 2.2e-23 112.8 149 38.9
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.0e-23 111.7 149 38.3
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 6.5e-23 111.3 124 46.0
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.9e-22 109.8 149 39.6
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 1.9e-22 109.8 148 39.9
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.9e-22 109.8 148 39.2
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.2e-22 108.6 109 51.4
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 7.2e-22 107.8 139 39.6
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.2e-22 107.8 149 38.9
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.2e-21 107.1 149 38.3
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 2.1e-21 106.3 149 37.6
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 6.1e-21 104.8 147 39.5
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 6.1e-21 104.8 152 40.1
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 1.4e-20 103.6 149 38.3
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.8e-20 103.2 147 38.8
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 5.2e-20 101.7 148 37.8
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 6.8e-20 101.3 149 36.9
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.5e-19 100.1 150 38.0
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 2.0e-19 99.8 149 37.6
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 2.6e-19 99.4 152 35.5
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 5.7e-19 98.2 149 37.6
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 7.5e-19 97.8 149 36.9
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.7e-18 96.7 148 35.8
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 3.7e-18 95.5 148 36.5
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 3.7e-18 95.5 148 36.5
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 4.9e-18 95.1 148 35.8
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 1.1e-17 94.0 118 39.0
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 1.1e-17 94.0 149 34.9
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.4e-17 93.6 151 35.8
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.8e-17 93.2 151 33.1
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.8e-17 93.2 151 33.1
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 3.1e-17 92.4 138 39.1
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 5.4e-17 91.7 152 35.5
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.0e-17 91.3 148 35.8
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.0e-17 91.3 148 34.5
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.0e-17 91.3 148 35.1
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 1.2e-16 90.5 150 36.7
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-16 90.5 148 35.1
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-16 90.5 148 35.1
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 1.2e-16 90.5 149 37.6
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 1.6e-16 90.1 148 35.1
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.0e-16 89.7 105 46.7
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 3.5e-16 89.0 149 36.2
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 5.9e-16 88.2 139 36.7
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 7.8e-16 87.8 149 35.6
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 1.0e-15 87.4 89 49.4
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 1.7e-15 86.7 141 35.5
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.7e-15 86.7 148 33.8
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.7e-15 86.7 150 33.3
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.7e-15 86.7 150 33.3
ECA246G0900 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.3e-15 86.3 57 70.2
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.3e-15 86.3 140 35.0
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 2.3e-15 86.3 135 37.0
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.0e-15 85.1 150 33.3
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 8.6e-15 84.3 99 40.4
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.9e-14 83.2 138 35.5
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.5e-14 82.8 148 33.8
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 7.3e-14 81.3 74 52.7
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.6e-13 80.1 68 54.4
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.6e-13 79.0 147 33.3
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.0e-13 77.8 149 33.6
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 7.5e-11 71.2 75 44.0
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 1.4e-09 67.0 81 43.2
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 4.1e-09 65.5 79 43.0
HanXRQChr16g0500041 Helianthus annuus HOM05D001219 ORTHO05D001017 7.0e-09 64.7 129 34.1
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.0e-08 63.2 54 53.7
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.3e-07 60.5 131 31.3
Lsat_1_v5_gn_4_86000 Lactuca sativa HOM05D001219 ORTHO05D001017 2.3e-07 59.7 142 31.7
AUR62016289 Chenopodium quinoa HOM05D001219 ORTHO05D001017 5.6e-06 55.1 94 33.0
Sc23g0005220 Simmondsia chinensis HOM05D002813 ORTHO05D003203 5.6e-06 55.1 115 32.2
AagrBONN_evm.TU.Sc2ySwM_344.1324 Anthoceros agrestis HOM05D001219 ORTHO05D001017 7.3e-06 54.7 98 30.6


User provided reference genes

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