Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 2.4e-193 678.7 360 100.0
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.7e-178 629.4 363 92.8
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 2.3e-143 512.7 354 76.8
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 6.7e-143 511.1 363 76.6
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.3e-125 453.8 368 67.7
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 9.1e-124 447.6 385 64.7
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 1.2e-123 447.2 364 66.2
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 7.7e-123 444.5 387 63.8
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 6.5e-122 441.4 364 65.4
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 6.5e-122 441.4 364 65.4
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.1e-121 440.7 364 64.8
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 1.9e-121 439.9 364 64.8
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 5.5e-121 438.3 368 66.6
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.6e-120 436.8 363 64.7
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 4.7e-120 435.3 366 63.9
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 6.1e-120 434.9 361 64.8
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 6.8e-119 431.4 363 63.4
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 8.8e-119 431.0 363 63.9
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 8.8e-119 431.0 368 64.1
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 1.2e-118 430.6 366 62.6
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.0e-118 429.9 371 64.4
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 2.0e-118 429.9 364 64.0
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 5.7e-118 428.3 361 63.4
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 9.8e-118 427.6 366 64.5
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 9.8e-118 427.6 366 64.5
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 1.3e-117 427.2 367 63.2
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.3e-117 427.2 360 64.2
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.3e-117 427.2 368 63.3
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.7e-117 426.8 364 62.9
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 2.2e-117 426.4 365 63.3
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 3.7e-117 425.6 367 63.2
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 4.9e-117 425.2 362 63.3
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 6.3e-117 424.9 367 62.4
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.8e-116 423.3 365 63.0
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 5.4e-116 421.8 367 62.9
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 5.4e-116 421.8 364 63.2
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 9.1e-116 421.0 371 61.2
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 1.6e-115 420.2 359 62.1
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 4.5e-115 418.7 365 61.9
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 4.5e-115 418.7 369 64.8
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 5.9e-115 418.3 365 60.8
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.9e-115 418.3 357 63.3
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 5.9e-115 418.3 357 63.3
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 2.9e-114 416.0 365 61.4
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 6.6e-114 414.8 359 62.4
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 1.1e-113 414.1 370 61.9
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 1.5e-113 413.7 383 62.4
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 3.3e-113 412.5 364 61.0
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 4.2e-113 412.1 358 62.0
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.6e-112 410.2 371 60.1
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 2.1e-112 409.8 359 61.8
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 2.1e-112 409.8 399 58.1
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 2.1e-112 409.8 361 64.5
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 2.8e-112 409.5 370 60.8
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 4.7e-112 408.7 371 60.1
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 6.1e-112 408.3 358 62.8
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.3e-111 406.4 355 61.4
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 2.3e-111 406.4 368 61.7
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 3.0e-111 406.0 360 60.6
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 3.0e-111 406.0 360 64.7
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 1.2e-110 404.1 371 61.5
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 2.0e-110 403.3 362 61.6
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 2.0e-110 403.3 359 61.6
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 2.6e-110 402.9 369 61.0
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 3.7e-109 399.1 383 60.8
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 8.3e-109 397.9 379 59.9
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 8.3e-109 397.9 379 60.2
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.8e-108 396.7 357 61.1
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 4.6e-107 392.1 364 59.9
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.7e-106 390.2 373 60.6
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 1.2e-104 384.0 369 59.9
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 1.0e-103 380.9 384 57.8
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.8e-103 380.2 432 52.3
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.2e-102 377.5 341 61.6
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.5e-102 377.1 363 58.4
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 2.0e-102 376.7 361 60.1
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 3.4e-102 375.9 364 57.4
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.7e-101 373.6 365 57.0
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 1.2e-99 367.5 379 57.8
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 1.6e-99 367.1 365 56.4
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 2.0e-99 366.7 359 56.5
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 2.3e-98 363.2 359 56.8
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 1.5e-97 360.5 362 56.4
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 7.3e-97 358.2 349 57.9
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 2.1e-96 356.7 366 58.5
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 1.1e-95 354.4 384 53.6
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 1.1e-95 354.4 369 57.7
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 1.4e-95 354.0 382 53.9
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.4e-94 349.0 346 59.8
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 7.5e-94 348.2 368 56.0
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 1.7e-93 347.1 393 51.4
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.2e-93 346.7 364 55.5
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 2.9e-93 346.3 366 56.0
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 8.3e-93 344.7 369 51.5
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.1e-92 344.4 432 49.3
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 4.6e-91 339.0 364 55.2
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 7.8e-91 338.2 367 54.8
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 1.1e-89 334.3 371 51.8
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 1.1e-89 334.3 371 51.8
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 2.5e-89 333.2 364 53.8
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 9.5e-89 331.3 377 52.0
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.1e-88 330.1 378 51.6
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 3.6e-88 329.3 366 56.0
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 6.2e-88 328.6 366 56.0
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.2e-86 324.3 367 52.3
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 3.2e-84 316.2 364 51.4
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 8.6e-82 308.1 378 49.5
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 2.5e-81 306.6 371 49.1
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 4.3e-81 305.8 373 48.0
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 5.6e-81 305.4 373 48.3
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 9.6e-81 304.7 378 48.7
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 9.6e-81 304.7 378 48.7
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 2.0e-78 297.0 380 47.9
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 5.3e-71 272.3 344 52.0
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 4.9e-69 265.8 394 41.9
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 6.2e-64 248.8 364 44.5
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 9.9e-62 241.5 241 56.8
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 2.2e-61 240.4 215 61.4
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 4.9e-61 239.2 342 41.2
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 2.3e-58 230.3 445 34.8
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.5e-57 226.9 182 64.3
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.2e-53 213.8 283 47.0
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 1.3e-48 198.0 281 45.6
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 2.2e-45 187.2 356 36.0
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 7.2e-44 182.2 225 47.6
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.0e-42 178.3 124 71.8
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 1.2e-38 164.9 119 63.9
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.2e-35 154.8 164 55.5
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 3.9e-26 123.2 66 89.4
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 1.2e-19 101.7 421 25.4
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 1.3e-16 91.7 402 26.4
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.7e-16 91.3 117 47.9
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.7e-16 91.3 104 46.2
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 3.5e-14 83.6 56 73.2
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 4.5e-14 83.2 50 82.0
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 2.9e-13 80.5 511 24.5
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 1.5e-12 78.2 49 71.4
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 7.2e-12 75.9 60 63.3
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 7.2e-12 75.9 61 63.9
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 1.6e-11 74.7 61 63.9
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 3.0e-10 70.5 59 62.7
Cfa025636 Carpinus fangiana HOM05D002744 ORTHO05D006546 1.7e-08 64.7 407 25.1


User provided reference genes

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