Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr07g0185961 Helianthus annuus HOM05D007163 ORTHO05D009213 2.3e-60 235.3 117 100.0
HanXRQChr09g0256071 Helianthus annuus HOM05D007163 ORTHO05D009213 6.5e-47 190.7 100 96.0
ECA232G3833 Erigeron canadensis HOM05D007163 ORTHO05D009213 1.7e-42 176.0 100 86.0
Thecc.04G030600 Theobroma cacao HOM05D007163 ORTHO05D009213 5.4e-41 171.0 99 83.8
COL.COLO4_08751 Corchorus olitorius HOM05D007163 ORTHO05D009213 9.1e-41 170.2 99 82.8
Atru.chr6.2521 Acer truncatum HOM05D007163 ORTHO05D009213 1.2e-40 169.9 99 82.8
Prupe.3G303000 Prunus persica HOM05D007163 ORTHO05D009213 2.0e-40 169.1 99 82.8
RcHm_v2.0_Chr2g0174941 Rosa chinensis HOM05D007163 ORTHO05D009213 3.5e-40 168.3 103 78.6
SGA_v2.0_scaffold18G08218 Striga asiatica HOM05D007163 ORTHO05D009213 3.5e-40 168.3 129 65.9
Dinv25673 Davidia involucrata HOM05D007163 ORTHO05D009213 4.5e-40 167.9 129 65.9
Potri.001G333500 Populus trichocarpa HOM05D007163 ORTHO05D009213 4.5e-40 167.9 99 82.8
Manes.15G158600 Manihot esculenta HOM05D007163 ORTHO05D009213 5.9e-40 167.5 99 81.8
SalBow1G0436 Salvia bowleyana HOM05D007163 ORTHO05D009213 5.9e-40 167.5 99 80.8
GSVIVG01001816001 Vitis vinifera HOM05D007163 ORTHO05D009213 5.9e-40 167.5 99 80.8
Lsat_1_v5_gn_4_185401 Lactuca sativa HOM05D007163 ORTHO05D009213 7.7e-40 167.2 100 80.0
FvH4_6g53090 Fragaria vesca HOM05D007163 ORTHO05D009213 1.0e-39 166.8 99 79.8
FAN09G2097 Fragaria x ananassa HOM05D007163 ORTHO05D009213 1.0e-39 166.8 99 79.8
FAN14G4233 Fragaria x ananassa HOM05D007163 ORTHO05D009213 1.0e-39 166.8 99 79.8
CSS0007697 Camellia sinensis var. sinensis HOM05D007163 ORTHO05D009213 1.3e-39 166.4 98 81.6
vmacro05939 Vaccinium macrocarpon HOM05D007163 ORTHO05D009213 1.7e-39 166.0 99 80.8
FAN02G2995 Fragaria x ananassa HOM05D007163 ORTHO05D009213 2.3e-39 165.6 99 79.8
Nn3g16518 Nelumbo nucifera HOM05D007163 ORTHO05D009213 2.3e-39 165.6 99 78.8
Cc07_g00620 Coffea canephora HOM05D007163 ORTHO05D009213 2.9e-39 165.2 99 78.8
Sabra16G0214800 Salix brachista HOM05D007163 ORTHO05D009213 3.8e-39 164.9 99 80.8
Duzib264G0233 Durio zibethinus HOM05D007163 ORTHO05D009213 5.0e-39 164.5 99 79.8
Gohir.D04G078700 Gossypium hirsutum HOM05D007163 ORTHO05D009213 5.0e-39 164.5 98 79.6
Gorai.012G088600 Gossypium raimondii HOM05D007163 ORTHO05D009213 5.0e-39 164.5 98 79.6
CiPaw.04G034900 Carya illinoinensis HOM05D007163 ORTHO05D009213 6.6e-39 164.1 99 79.8
Gohir.A05G340200 Gossypium hirsutum HOM05D007163 ORTHO05D009213 1.5e-38 162.9 98 78.6
QL02p071962 Quercus lobata HOM05D007163 ORTHO05D009213 1.5e-38 162.9 99 77.8
AUR62018255 Chenopodium quinoa HOM05D007163 ORTHO05D009213 1.9e-38 162.5 112 72.3
PSO063G0972 Papaver somniferum HOM05D007163 ORTHO05D009213 1.9e-38 162.5 99 76.8
ClCG11G006970 Citrullus lanatus HOM05D007163 ORTHO05D009213 2.5e-38 162.2 99 78.8
MD17G1014800 Malus domestica HOM05D007163 ORTHO05D009213 2.5e-38 162.2 103 76.7
CAN.G1965.14 Capsicum annuum HOM05D007163 ORTHO05D009213 3.3e-38 161.8 99 77.8
Ciclev10014964m.g Citrus clementina HOM05D007163 ORTHO05D009213 3.3e-38 161.8 99 78.8
Eucgr.J02313 Eucalyptus grandis HOM05D007163 ORTHO05D009213 4.2e-38 161.4 98 77.6
Sed0015727 Sechium edule HOM05D007163 ORTHO05D009213 4.2e-38 161.4 99 77.8
Glyma.19G087600 Glycine max HOM05D007163 ORTHO05D009213 5.5e-38 161.0 99 76.8
Psat3g180240 Pisum sativum HOM05D007163 ORTHO05D009213 5.5e-38 161.0 99 76.8
AUR62037751 Chenopodium quinoa HOM05D007163 ORTHO05D009213 7.2e-38 160.6 112 71.4
CsaV3_6G001080 Cucumis sativus L. HOM05D007163 ORTHO05D009213 7.2e-38 160.6 99 76.8
Migut.H00010 Erythranthe guttata HOM05D007163 ORTHO05D009213 9.5e-38 160.2 103 75.7
TPR.G38344 Trifolium pratense HOM05D007163 ORTHO05D009213 9.5e-38 160.2 99 74.7
Haze_14841 Corylus avellana HOM05D007163 ORTHO05D009213 1.2e-37 159.8 99 77.8
DCAR_021768 Daucus carota HOM05D007163 ORTHO05D009213 1.2e-37 159.8 99 74.7
Lj1g0003964 Lotus japonicus HOM05D007163 ORTHO05D009213 1.2e-37 159.8 99 76.8
Lalb_Chr14g0363061 Lupinus albus HOM05D007163 ORTHO05D009213 1.2e-37 159.8 99 76.8
Nitab4.5_0006819g0080 Nicotiana tabacum HOM05D007163 ORTHO05D009213 1.2e-37 159.8 99 76.8
Actinidia36181 Actinidia chinensis HOM05D007163 ORTHO05D009213 1.6e-37 159.5 99 77.8
MELO3C008208.2 Cucumis melo HOM05D007163 ORTHO05D009213 1.6e-37 159.5 99 76.8
Solyc03g005080.4 Solanum lycopersicum HOM05D007163 ORTHO05D009213 1.6e-37 159.5 99 76.8
Sopen03g001080 Solanum pennellii HOM05D007163 ORTHO05D009213 1.6e-37 159.5 99 76.8
PGSC0003DMG400013429 Solanum tuberosum HOM05D007163 ORTHO05D009213 1.6e-37 159.5 99 76.8
arahy.Tifrunner.gnm1.ann1.P5B8TA Arachis hypogaea HOM05D007163 ORTHO05D009213 2.8e-37 158.7 99 76.8
Sc03g0006730 Simmondsia chinensis HOM05D007163 ORTHO05D009213 2.8e-37 158.7 99 75.8
THA.LOC104802380 Tarenaya hassleriana HOM05D007163 ORTHO05D009213 2.8e-37 158.7 99 75.8
arahy.Tifrunner.gnm1.ann1.P8AP0Y Arachis hypogaea HOM05D007163 ORTHO05D009213 3.6e-37 158.3 99 75.8
Peaxi162Scf00700g00151 Petunia axillaris HOM05D007163 ORTHO05D009213 3.6e-37 158.3 99 75.8
TWI56G0022 Tripterygium wilfordii HOM05D007163 ORTHO05D009213 3.6e-37 158.3 99 75.8
Cpa.g.sc130.4 Carica papaya HOM05D007163 ORTHO05D009213 4.7e-37 157.9 99 76.8
Rhsim10G0008600 Rhododendron simsii HOM05D007163 ORTHO05D009213 4.7e-37 157.9 99 75.8
Ca_27151_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 6.1e-37 157.5 99 73.7
Medtr7g031310 Medicago truncatula HOM05D007163 ORTHO05D009213 1.4e-36 156.4 99 73.7
Lju41C50G12 Lonicera japonica HOM05D007163 ORTHO05D009213 1.8e-36 156.0 112 69.6
MD17G1014700 Malus domestica HOM05D007163 ORTHO05D009213 1.8e-36 156.0 103 73.8
Phvul.001G095800 Phaseolus vulgaris HOM05D007163 ORTHO05D009213 1.8e-36 156.0 99 75.8
CANSAT64G2763 Cannabis sativa HOM05D007163 ORTHO05D009213 2.3e-36 155.6 99 72.7
TAR374G1101 Trochodendron aralioides HOM05D007163 ORTHO05D009213 2.3e-36 155.6 99 71.7
Carub.0006s1242 Capsella rubella HOM05D007163 ORTHO05D009213 3.0e-36 155.2 99 72.7
Aa31LG11G15010 Aethionema arabicum HOM05D007163 ORTHO05D009213 5.2e-36 154.5 99 72.7
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 6.8e-36 154.1 99 72.7
Sp6g29810 Schrenkiella parvula HOM05D007163 ORTHO05D009213 6.8e-36 154.1 99 73.7
EL10Ac2g03213 Beta vulgaris HOM05D007163 ORTHO05D009213 1.2e-35 153.3 112 67.9
CARHR199120 Cardamine hirsuta HOM05D007163 ORTHO05D009213 1.5e-35 152.9 99 71.7
AT5G14220 Arabidopsis thaliana HOM05D007163 ORTHO05D009213 2.0e-35 152.5 96 74.0
Aqoxy5G03466 Aquilegia oxysepala HOM05D007163 ORTHO05D009213 2.6e-35 152.1 100 72.0
BcaC04g19052 Brassica carinata HOM05D007163 ORTHO05D009213 2.6e-35 152.1 99 71.7
C09p62940 Brassica napus HOM05D007163 ORTHO05D009213 2.6e-35 152.1 99 71.7
BolC9t59131H Brassica oleracea HOM05D007163 ORTHO05D009213 2.6e-35 152.1 99 71.7
VMungo1383G0219 Vigna mungo HOM05D007163 ORTHO05D009213 2.6e-35 152.1 99 71.7
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 7.5e-35 150.6 99 71.7
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 7.5e-35 150.6 99 71.7
CDE08G0784 Ceratophyllum demersum HOM05D007163 ORTHO05D009213 9.8e-35 150.2 99 69.7
AL6G24890 Arabidopsis lyrata HOM05D007163 ORTHO05D009213 1.7e-34 149.4 96 71.9
MBI11_g06765_MAGBIO Magnolia biondii HOM05D007163 ORTHO05D009213 1.7e-34 149.4 99 72.7
Ah.11g045340 Amaranthus hybridus HOM05D007163 ORTHO05D009213 4.9e-34 147.9 99 70.7
ATR0686G011 Amborella trichopoda HOM05D007163 ORTHO05D009213 4.9e-34 147.9 99 70.7
RcHm_v2.0_Chr2g0174871 Rosa chinensis HOM05D007163 ORTHO05D009213 4.5e-32 141.4 107 66.4
unitig_0.g1943 Utricularia gibba HOM05D007163 ORTHO05D009213 8.6e-31 137.1 100 66.0
Zm00001eb078900 Zea mays HOM05D007163 ORTHO05D009213 2.5e-30 135.6 100 64.0
Os04g0490100 Oryza sativa ssp. japonica HOM05D007163 ORTHO05D009213 5.6e-30 134.4 104 61.5
Nitab4.5_0000559g0210 Nicotiana tabacum HOM05D007163 ORTHO05D009213 7.3e-30 134.0 99 67.7
Actinidia05923 Actinidia chinensis HOM05D007163 ORTHO05D009213 1.0e-28 130.2 99 67.7
HanXRQChr07g0185771 Helianthus annuus HOM05D007163 ORTHO05D034826 7.5e-27 124.0 64 95.3
Thhalv10013706m.g Eutrema salsugineum HOM05D007163 ORTHO05D009213 8.3e-26 120.6 74 75.7
SMO165G0055 Selaginella moellendorffii HOM05D007163 ORTHO05D009213 3.5e-24 115.2 96 59.4
AagrBONN_evm.TU.Sc2ySwM_362.138 Anthoceros agrestis HOM05D007163 ORTHO05D009213 1.0e-23 113.6 95 54.7
Pp3c1_4180 Physcomitrium patens HOM05D007163 ORTHO05D009213 3.3e-22 108.6 95 53.7
Oeu011952.2 Olea europaea HOM05D007163 ORTHO05D009213 1.8e-20 102.8 61 82.0
CBR_g44281 Chara braunii HOM05D007163 ORTHO05D009213 7.0e-17 90.9 94 46.8
HanXRQChr17g0551211 Helianthus annuus HOM05D000766 ORTHO05D000587 1.4e-12 76.6 39 97.4
HanXRQChr12g0386091 Helianthus annuus HOM05D007163 ORTHO05D000587 6.8e-12 74.3 38 97.4
COL.COLO4_08747 Corchorus olitorius HOM05D007163 ORTHO05D034826 3.4e-11 72.0 39 84.6
AagrBONN_evm.TU.Sc2ySwM_368.2775 Anthoceros agrestis HOM05D006046 ORTHO05D007580 2.7e-08 62.4 107 30.8
SEGI_28664 Sequoiadendron giganteum HOM05D006046 ORTHO05D007580 1.0e-07 60.5 95 33.7
Sed0002893 Sechium edule HOM05D006046 ORTHO05D007580 1.7e-07 59.7 95 31.6
HPP92_010589 Vanilla planifolia HOM05D006046 ORTHO05D007580 8.6e-07 57.4 95 31.6
CANSAT25G3010 Cannabis sativa HOM05D006046 ORTHO05D007580 1.1e-06 57.0 107 29.0
Carub.0006s3551 Capsella rubella HOM05D006046 ORTHO05D007580 1.1e-06 57.0 95 33.7
Mapoly0001s0469 Marchantia polymorpha HOM05D006046 ORTHO05D007580 1.1e-06 57.0 107 29.0
MSTRG.18059 Avicennia marina HOM05D006046 ORTHO05D007580 1.9e-06 56.2 95 31.6
Nitab4.5_0003092g0030 Nicotiana tabacum HOM05D006046 ORTHO05D007580 1.9e-06 56.2 95 29.5
TPR.G3061 Trifolium pratense HOM05D006046 ORTHO05D007580 1.9e-06 56.2 101 30.7
Migut.D00009 Erythranthe guttata HOM05D006046 ORTHO05D007580 2.5e-06 55.8 107 29.0
Os01g0286600 Oryza sativa ssp. japonica HOM05D006046 ORTHO05D007580 2.5e-06 55.8 95 31.6
Sp6g01580 Schrenkiella parvula HOM05D006046 ORTHO05D007580 2.5e-06 55.8 95 33.7
Sed0026667 Sechium edule HOM05D006046 ORTHO05D007580 2.5e-06 55.8 95 31.6
Zm00001eb332380 Zea mays HOM05D006046 ORTHO05D007580 2.5e-06 55.8 95 30.5
Rhsim01G0000700 Rhododendron simsii HOM05D006046 ORTHO05D007580 3.3e-06 55.5 95 31.6
TWI59G0782 Tripterygium wilfordii HOM05D006046 ORTHO05D007580 3.3e-06 55.5 95 32.6
ClCG01G007200 Citrullus lanatus HOM05D006046 ORTHO05D007580 4.3e-06 55.1 95 30.5
Eucgr.K00558 Eucalyptus grandis HOM05D006046 ORTHO05D007580 5.6e-06 54.7 99 31.3
AT4G01690 Arabidopsis thaliana HOM05D006046 ORTHO05D007580 7.3e-06 54.3 95 32.6
Thhalv10028544m.g Eutrema salsugineum HOM05D006046 ORTHO05D007580 7.3e-06 54.3 95 32.6
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 7.3e-06 54.3 95 30.5
QL12p035018 Quercus lobata HOM05D006046 ORTHO05D007580 7.3e-06 54.3 95 31.6
Solyc01g079090.4 Solanum lycopersicum HOM05D006046 ORTHO05D007580 7.3e-06 54.3 95 29.5
Sopen01g030600 Solanum pennellii HOM05D006046 ORTHO05D007580 7.3e-06 54.3 95 29.5
PGSC0003DMG400001117 Solanum tuberosum HOM05D006046 ORTHO05D007580 7.3e-06 54.3 95 29.5
CARHR249980 Cardamine hirsuta HOM05D006046 ORTHO05D007580 9.5e-06 53.9 95 32.6
CDE11G0173 Ceratophyllum demersum HOM05D006046 ORTHO05D007580 9.5e-06 53.9 95 30.5
Ca_10238_v3 Cicer arietinum L. HOM05D006046 ORTHO05D007580 9.5e-06 53.9 101 29.7
FAN26G1773 Fragaria x ananassa HOM05D006046 ORTHO05D007580 9.5e-06 53.9 95 30.5
PSO210G0070 Papaver somniferum HOM05D006046 ORTHO05D007580 9.5e-06 53.9 101 33.7
Pp3c1_34400 Physcomitrium patens HOM05D006046 ORTHO05D007580 9.5e-06 53.9 89 33.7
Prupe.3G001700 Prunus persica HOM05D006046 ORTHO05D007580 9.5e-06 53.9 95 31.6


User provided reference genes

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