Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 2.0e-277 958.4 460 100.0
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 8.4e-207 723.8 435 79.8
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 1.2e-205 719.9 419 82.8
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 8.8e-180 634.0 423 71.4
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 7.4e-179 630.9 427 74.2
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 2.4e-177 625.9 364 78.0
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 1.5e-174 616.7 391 72.1
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 6.1e-173 611.3 422 66.6
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 1.0e-172 610.5 409 69.9
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 3.3e-171 605.5 409 70.7
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 1.1e-169 600.5 429 65.7
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 1.4e-169 600.1 368 74.2
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 5.3e-169 598.2 417 66.4
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 7.0e-169 597.8 367 74.4
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.6e-168 596.7 396 68.2
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 1.6e-168 596.7 412 66.5
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 1.6e-168 596.7 391 69.3
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 7.7e-168 594.3 416 65.6
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 1.0e-167 594.0 421 65.6
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 3.8e-167 592.0 366 73.2
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 5.0e-167 591.7 417 65.2
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 5.0e-167 591.7 382 69.9
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 6.5e-167 591.3 383 70.2
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 1.1e-166 590.5 410 66.1
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 1.1e-166 590.5 421 65.3
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 1.5e-166 590.1 408 65.9
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 2.5e-166 589.3 399 67.9
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 4.2e-166 588.6 367 72.8
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 7.2e-166 587.8 426 66.9
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 7.2e-166 587.8 413 65.4
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 9.4e-166 587.4 370 69.7
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 9.4e-166 587.4 395 67.6
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 1.6e-165 586.6 390 67.4
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 3.6e-165 585.5 396 67.2
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 4.7e-165 585.1 420 64.0
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 2.3e-164 582.8 420 64.0
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 3.0e-164 582.4 371 71.7
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 6.8e-164 581.3 404 65.6
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 6.8e-164 581.3 367 71.1
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 8.8e-164 580.9 420 68.1
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 8.8e-164 580.9 396 65.7
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 1.5e-163 580.1 422 63.5
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 2.6e-163 579.3 434 62.4
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 2.2e-162 576.2 392 67.1
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 3.7e-162 575.5 372 68.3
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.8e-161 573.2 374 67.9
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 1.8e-161 573.2 434 62.7
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 2.4e-161 572.8 418 63.9
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 9.1e-161 570.9 405 64.4
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 9.1e-161 570.9 402 65.4
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 1.2e-160 570.5 389 67.9
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 1.1e-158 563.9 438 60.5
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 1.1e-158 563.9 421 61.8
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 1.5e-158 563.5 396 65.4
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 1.9e-158 563.1 370 67.8
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 9.5e-158 560.8 370 67.3
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 1.6e-157 560.1 383 66.8
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 2.1e-157 559.7 382 66.2
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 2.1e-157 559.7 372 67.5
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 4.7e-157 558.5 370 67.8
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 4.7e-157 558.5 333 76.6
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 1.4e-156 557.0 362 69.9
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 1.8e-156 556.6 423 61.9
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 3.0e-156 555.8 410 64.1
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 3.0e-156 555.8 385 65.5
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 4.0e-156 555.4 367 67.0
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 2.6e-155 552.7 402 62.7
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 2.6e-155 552.7 368 66.0
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 4.4e-155 552.0 384 68.0
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 9.8e-155 550.8 361 68.4
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 1.3e-154 550.4 366 66.9
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 3.7e-154 548.9 382 65.7
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 3.7e-154 548.9 417 60.9
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 6.3e-154 548.1 437 60.2
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 8.3e-154 547.7 362 69.6
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 4.1e-153 545.4 410 62.2
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 1.2e-152 543.9 428 59.6
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 1.6e-152 543.5 347 72.3
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 1.6e-152 543.5 374 65.0
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 2.0e-152 543.1 429 61.8
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 3.5e-152 542.3 406 61.8
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 4.5e-152 542.0 439 59.2
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 8.6e-151 537.7 376 65.7
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 8.9e-148 527.7 418 60.5
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 2.0e-147 526.6 392 61.2
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 1.2e-144 517.3 378 62.7
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 2.7e-144 516.2 407 58.2
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 5.0e-143 511.9 386 60.9
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 8.6e-143 511.1 384 61.2
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 3.1e-140 502.7 385 61.0
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 4.1e-137 492.3 324 67.3
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 6.6e-135 485.0 310 70.3
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 1.5e-134 483.8 365 57.8
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 3.3e-134 482.6 293 72.7
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 5.6e-134 481.9 307 71.7
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 1.8e-132 476.9 363 59.2
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 9.5e-126 454.5 362 55.8
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 7.6e-123 444.9 432 48.6
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 7.6e-123 444.9 432 48.4
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 2.1e-120 436.8 401 51.4
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 1.7e-114 417.2 329 59.6
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 2.3e-111 406.8 258 72.9
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 3.3e-110 402.9 417 47.5
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 1.1e-105 387.9 229 77.3
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 1.5e-99 367.5 280 62.1
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 3.7e-93 346.3 242 73.1
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 2.6e-91 340.1 365 47.7
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 1.5e-78 297.7 381 43.0
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 8.2e-77 292.0 356 44.9
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 2.5e-65 253.8 186 61.3
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 1.2e-64 251.5 195 64.6
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 1.2e-54 218.4 234 45.7
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 1.8e-52 211.1 468 30.3
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 2.9e-42 177.2 129 60.5
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 7.0e-36 156.0 102 66.7
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 1.7e-26 124.8 296 30.1
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 8.9e-23 112.5 90 62.2
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 3.2e-20 104.0 73 61.6
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.2e-19 102.1 61 75.4
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 1.6e-19 101.7 51 92.2
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 2.7e-19 100.9 62 74.2
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 3.9e-18 97.1 62 67.7
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 4.9e-13 80.1 64 56.2
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 2.4e-12 77.8 44 75.0
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 8.6e-10 69.3 42 61.9
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 8.1e-08 62.8 72 50.0


User provided reference genes

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