Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 0.0e+00 1275.4 654 100.0
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 0.0e+00 1093.2 660 84.2
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 2.4e-295 1018.5 664 80.6
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 1.3e-269 932.9 653 73.7
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.1e-265 919.8 653 73.2
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 3.3e-265 918.3 653 72.4
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 8.2e-264 913.7 658 71.7
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 3.1e-263 911.8 657 72.1
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 4.5e-262 907.9 656 70.6
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 1.7e-261 906.0 659 71.0
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 2.9e-261 905.2 659 71.8
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 3.8e-261 904.8 661 71.3
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.9e-260 902.5 659 70.6
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 7.2e-260 900.6 655 70.2
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 7.2e-260 900.6 649 71.6
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.6e-259 899.4 653 71.5
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 2.1e-259 899.0 653 72.6
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 3.6e-259 898.3 640 70.9
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 6.1e-259 897.5 661 71.4
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 7.9e-259 897.1 657 71.4
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 3.0e-258 895.2 654 70.6
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 3.9e-258 894.8 643 72.0
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 5.1e-258 894.4 655 69.0
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 8.7e-258 893.6 647 69.9
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 8.7e-258 893.6 657 71.1
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 8.7e-258 893.6 653 71.5
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 1.1e-257 893.3 661 71.4
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 7.4e-257 890.6 662 69.8
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 9.7e-257 890.2 650 70.9
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.6e-256 889.4 652 71.8
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 2.2e-256 889.0 645 69.5
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 2.8e-256 888.6 640 70.3
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 3.7e-256 888.3 640 70.6
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 6.3e-256 887.5 661 70.7
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 8.2e-256 887.1 650 70.2
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 1.1e-255 886.7 656 70.6
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 1.1e-255 886.7 653 71.2
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 1.4e-255 886.3 647 69.4
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.8e-255 885.9 655 69.9
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 5.3e-255 884.4 654 70.5
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 6.9e-255 884.0 656 69.5
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.2e-254 883.2 645 70.5
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 4.5e-254 881.3 659 70.3
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 1.9e-252 875.9 656 70.3
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 5.5e-252 874.4 651 70.2
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 7.9e-251 870.5 647 68.8
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 2.6e-249 865.5 651 68.4
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 7.4e-249 864.0 659 68.6
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 2.2e-248 862.4 652 67.9
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 2.2e-248 862.4 641 69.1
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 6.3e-248 860.9 682 67.3
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 6.3e-248 860.9 656 68.1
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 8.2e-248 860.5 657 66.5
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 1.4e-247 859.8 652 67.5
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.8e-247 859.4 645 68.2
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 6.9e-247 857.4 641 69.1
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 2.6e-246 855.5 657 67.1
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 3.8e-245 851.7 644 67.9
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 2.1e-243 845.9 639 67.6
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 2.1e-243 845.9 641 67.4
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 7.9e-243 844.0 652 66.9
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 3.0e-242 842.0 644 67.7
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 2.0e-241 839.3 640 68.9
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 1.4e-239 833.2 649 67.3
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 7.0e-239 830.9 650 66.5
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.6e-238 829.7 679 65.2
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.0e-237 827.0 679 64.9
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.9e-236 822.8 650 67.1
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 3.6e-235 818.5 600 70.3
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 1.8e-234 816.2 667 62.8
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 2.0e-233 812.8 646 65.2
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.1e-231 807.0 653 66.0
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 3.1e-231 805.4 659 66.0
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.1e-231 805.1 649 66.1
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 7.0e-231 804.3 689 63.9
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.7e-229 799.7 659 64.9
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 6.5e-229 797.7 590 69.5
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 4.2e-228 795.0 585 70.8
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 2.8e-224 782.3 736 59.6
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 4.5e-222 775.0 586 68.9
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.9e-220 769.6 863 51.9
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 3.2e-220 768.8 658 64.6
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 9.5e-220 767.3 592 68.6
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 3.7e-216 755.4 614 65.8
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 2.9e-213 745.7 683 58.4
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.0e-209 733.0 645 60.3
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 1.0e-205 720.7 641 61.3
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 6.6e-205 718.0 675 58.4
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 2.6e-201 706.1 643 58.8
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 5.2e-186 655.2 670 54.8
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 2.7e-182 642.9 845 46.7
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 7.8e-182 641.3 477 70.2
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 9.6e-180 634.4 507 66.1
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 3.6e-179 632.5 563 60.4
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 6.0e-174 615.1 476 66.6
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.0e-165 587.8 564 56.2
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.3e-155 554.3 603 53.2
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.8e-154 550.4 497 61.0
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.5e-140 504.2 436 60.6
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 1.4e-130 471.1 436 59.2
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 2.0e-113 414.1 461 49.7
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.9e-103 380.9 345 58.0
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 8.6e-80 302.4 434 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 2.3e-77 294.3 411 43.1
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 1.4e-74 285.0 232 59.1
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.1e-69 268.9 201 71.1
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 4.0e-69 266.9 197 71.1
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.0e-64 252.3 170 72.4
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 9.0e-61 239.2 404 39.9
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.2e-58 230.3 161 69.6
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 4.2e-58 230.3 283 47.7
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 6.0e-57 226.5 251 54.2
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 2.5e-47 194.5 137 70.1
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 4.9e-43 180.3 94 97.9
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 7.4e-39 166.4 167 57.5
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-36 157.1 445 30.1
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 1.0e-35 156.0 144 54.9
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 2.9e-35 154.5 138 58.7
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 1.1e-34 152.5 97 78.4
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 1.1e-31 142.5 90 75.6
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 8.2e-30 136.3 78 82.1
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 5.3e-29 133.7 96 68.8
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 2.6e-28 131.3 83 74.7
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 3.8e-27 127.5 79 79.7
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 8.5e-27 126.3 161 45.3
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.5e-26 124.8 96 63.5
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 6.7e-24 116.7 85 70.6
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 3.3e-23 114.4 164 43.3
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 1.8e-21 108.6 92 66.3
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 6.9e-21 106.7 84 64.3
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 1.5e-20 105.5 96 61.5
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 7.7e-20 103.2 170 38.2
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 2.5e-18 98.2 92 59.8
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 6.1e-17 93.6 73 67.1
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.4e-16 92.4 65 69.2
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.1e-15 89.4 67 64.2
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 2.8e-14 84.7 61 72.1
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 1.5e-12 79.0 50 76.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 1.5e-12 79.0 50 76.0
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-12 77.8 61 60.7
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 1.9e-10 72.0 50 70.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 2.7e-09 68.2 89 46.1
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 2.8e-06 58.2 49 55.1
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 3.7e-06 57.8 63 42.9


User provided reference genes

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